Wall clock time and date at job start Tue Mar 31 2020 00:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35744 * 116.99755 * 2 1 4 4 C 1.39284 * 120.84561 * 0.02562 * 3 2 1 5 5 C 1.37954 * 119.08995 * 179.97438 * 4 3 2 6 6 N 1.31973 * 120.82461 * 359.73933 * 5 4 3 7 7 C 1.31947 * 121.86370 * 0.53456 * 6 5 4 8 8 C 1.37994 * 120.82167 * 359.46463 * 7 6 5 9 9 C 1.50697 * 120.45838 * 180.23639 * 8 7 6 10 10 N 1.46907 * 109.47373 * 260.00587 * 9 8 7 11 11 C 1.46895 * 110.99883 * 179.97438 * 10 9 8 12 12 C 1.53005 * 109.46830 * 179.97438 * 11 10 9 13 13 C 1.52995 * 109.47432 * 300.00314 * 12 11 10 14 14 C 1.53008 * 109.46938 * 59.99919 * 12 11 10 15 15 C 1.52997 * 109.47298 * 179.97438 * 12 11 10 16 16 C 1.50691 * 109.47327 * 180.02562 * 15 12 11 17 17 H 1.08001 * 120.00286 * 0.02562 * 16 15 12 18 18 C 1.37881 * 120.00290 * 180.02562 * 16 15 12 19 19 N 1.31508 * 120.00451 * 180.02562 * 18 16 15 20 20 Si 1.86804 * 119.99821 * 0.02562 * 18 16 15 21 21 H 1.48496 * 109.47101 * 89.99865 * 20 18 16 22 22 H 1.48501 * 109.47220 * 210.00230 * 20 18 16 23 23 H 1.48507 * 109.47146 * 329.99990 * 20 18 16 24 24 H 1.09004 * 109.47092 * 180.02562 * 1 2 3 25 25 H 1.09008 * 109.47294 * 300.00291 * 1 2 3 26 26 H 1.08997 * 109.47193 * 60.00413 * 1 2 3 27 27 H 1.07995 * 120.45814 * 359.95897 * 4 3 2 28 28 H 1.08004 * 119.58569 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.59362 * 179.75291 * 7 6 5 30 30 H 1.08996 * 109.46937 * 20.00116 * 9 8 7 31 31 H 1.08998 * 109.47563 * 140.00560 * 9 8 7 32 32 H 1.00906 * 110.99583 * 303.95327 * 10 9 8 33 33 H 1.08998 * 109.47392 * 299.99379 * 11 10 9 34 34 H 1.08995 * 109.47108 * 60.00296 * 11 10 9 35 35 H 1.08997 * 109.47124 * 59.99298 * 13 12 11 36 36 H 1.08994 * 109.47196 * 180.02562 * 13 12 11 37 37 H 1.09008 * 109.46863 * 299.99738 * 13 12 11 38 38 H 1.09002 * 109.46888 * 60.00006 * 14 12 11 39 39 H 1.08994 * 109.47052 * 179.97438 * 14 12 11 40 40 H 1.08997 * 109.46963 * 300.00301 * 14 12 11 41 41 H 1.09002 * 109.47182 * 300.00394 * 15 12 11 42 42 H 1.08997 * 109.47018 * 59.99757 * 15 12 11 43 43 H 0.97001 * 120.00478 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0452 1.2095 0.0000 4 6 1.3039 2.3887 0.0005 5 6 1.9675 3.5981 0.0011 6 7 3.2864 3.6458 0.0062 7 6 4.0230 2.5511 0.0006 8 6 3.4346 1.3029 0.0001 9 6 4.2838 0.0580 -0.0010 10 7 4.3607 -0.4812 -1.3654 11 6 5.1831 -1.6977 -1.4050 12 6 5.2389 -2.2289 -2.8388 13 6 3.8228 -2.5548 -3.3175 14 6 5.8544 -1.1671 -3.7525 15 6 6.0960 -3.4957 -2.8803 16 6 6.1515 -4.0185 -4.2925 17 1 5.6282 -3.4991 -5.0817 18 6 6.8704 -5.1601 -4.5773 19 7 6.9193 -5.6162 -5.8098 20 14 7.7749 -6.0590 -3.2123 21 1 6.8759 -7.0748 -2.6080 22 1 8.9750 -6.7308 -3.7724 23 1 8.1930 -5.0861 -2.1712 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.2244 2.3567 0.0003 28 1 1.4006 4.5174 0.0011 29 1 5.0999 2.6329 0.0011 30 1 5.2864 0.3019 0.3502 31 1 3.8385 -0.6862 0.6592 32 1 3.4392 -0.6549 -1.7379 33 1 6.1919 -1.4656 -1.0637 34 1 4.7443 -2.4542 -0.7545 35 1 3.2126 -1.6521 -3.2880 36 1 3.8627 -2.9337 -4.3387 37 1 3.3843 -3.3113 -2.6666 38 1 6.8633 -0.9350 -3.4114 39 1 5.8946 -1.5457 -4.7738 40 1 5.2442 -0.2645 -3.7229 41 1 7.1049 -3.2631 -2.5394 42 1 5.6579 -4.2522 -2.2293 43 1 7.4247 -6.4195 -6.0101 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292629256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:12 Heat of formation + Delta-G solvation = -36.173180 kcal Electronic energy + Delta-G solvation = -21762.600184 eV Core-core repulsion = 18613.820439 eV Total energy + Delta-G solvation = -3148.779745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.66433 -39.22840 -39.12205 -36.17311 -34.38748 -32.43455 -32.14867 -29.64985 -28.48620 -27.93276 -27.51023 -25.72248 -23.88102 -23.65825 -22.65706 -19.55493 -19.22241 -18.86095 -18.11091 -16.90866 -16.86363 -16.36371 -15.97604 -15.84578 -15.71627 -15.22323 -15.15215 -14.97572 -14.48436 -14.37892 -14.11567 -13.92931 -13.47308 -13.44221 -12.88885 -12.79603 -12.73918 -12.48379 -12.41056 -12.21271 -12.06683 -12.01533 -11.71708 -11.36926 -11.02591 -10.84337 -10.69077 -10.47253 -10.10757 -9.78940 -9.23547 -8.20814 -6.21175 0.12780 0.36320 1.36469 1.38683 1.49877 2.19767 2.40560 2.79245 3.14213 3.41314 3.60592 3.72309 3.85337 4.01013 4.14491 4.18622 4.27948 4.32156 4.36042 4.38825 4.48540 4.70367 4.71830 4.78105 4.79909 4.83969 4.92041 5.00402 5.03734 5.08762 5.12542 5.18328 5.36854 5.44711 5.52520 5.62170 5.62811 5.75736 5.81922 6.09495 6.24081 6.42304 6.48528 6.86096 7.06904 7.41252 8.95489 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028996 B = 0.003562 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 965.429925 B = 7857.962270 C = 8132.474295 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.326 6.326 3 C 0.161 3.839 4 C -0.259 4.259 5 C 0.125 3.875 6 N -0.533 5.533 7 C 0.140 3.860 8 C -0.174 4.174 9 C 0.114 3.886 10 N -0.679 5.679 11 C 0.080 3.920 12 C -0.049 4.049 13 C -0.122 4.122 14 C -0.108 4.108 15 C -0.002 4.002 16 C -0.504 4.504 17 H 0.043 0.957 18 C 0.000 4.000 19 N -0.955 5.955 20 Si 0.941 3.059 21 H -0.271 1.271 22 H -0.289 1.289 23 H -0.248 1.248 24 H 0.114 0.886 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.165 0.835 28 H 0.184 0.816 29 H 0.172 0.828 30 H 0.090 0.910 31 H 0.037 0.963 32 H 0.340 0.660 33 H 0.071 0.929 34 H 0.027 0.973 35 H 0.059 0.941 36 H 0.036 0.964 37 H 0.044 0.956 38 H 0.040 0.960 39 H 0.027 0.973 40 H 0.062 0.938 41 H 0.015 0.985 42 H 0.012 0.988 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.763 16.045 16.705 26.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.238 6.238 3 C 0.107 3.893 4 C -0.280 4.280 5 C -0.031 4.031 6 N -0.246 5.246 7 C -0.016 4.016 8 C -0.178 4.178 9 C -0.015 4.015 10 N -0.311 5.311 11 C -0.049 4.049 12 C -0.049 4.049 13 C -0.179 4.179 14 C -0.165 4.165 15 C -0.040 4.040 16 C -0.542 4.542 17 H 0.061 0.939 18 C -0.195 4.195 19 N -0.597 5.597 20 Si 0.766 3.234 21 H -0.196 1.196 22 H -0.215 1.215 23 H -0.172 1.172 24 H 0.133 0.867 25 H 0.091 0.909 26 H 0.087 0.913 27 H 0.182 0.818 28 H 0.201 0.799 29 H 0.189 0.811 30 H 0.109 0.891 31 H 0.055 0.945 32 H 0.159 0.841 33 H 0.090 0.910 34 H 0.045 0.955 35 H 0.078 0.922 36 H 0.055 0.945 37 H 0.063 0.937 38 H 0.059 0.941 39 H 0.046 0.954 40 H 0.081 0.919 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -12.710 16.900 16.441 26.786 hybrid contribution -0.692 -2.268 0.270 2.387 sum -13.402 14.632 16.711 25.942 Atomic orbital electron populations 1.23417 0.75868 1.05721 1.02746 1.86075 1.23913 1.26262 1.87520 1.19458 0.92137 0.85494 0.92241 1.22467 1.02784 0.92357 1.10383 1.23067 0.89999 0.98292 0.91731 1.67781 1.08217 1.32423 1.16139 1.22776 1.00989 0.85967 0.91826 1.20323 0.91363 0.97504 1.08566 1.20577 0.98942 0.92085 0.89870 1.60608 1.19072 1.30855 1.20600 1.21890 0.97802 0.89824 0.95395 1.20355 0.95498 0.94810 0.94237 1.21666 0.95681 0.99919 1.00654 1.21502 0.99508 0.97483 0.98046 1.19585 0.95381 0.94022 0.94998 1.21430 1.29437 1.08948 0.94374 0.93873 1.25931 0.97600 0.98428 0.97557 1.70064 1.44249 1.24355 1.21067 0.85787 0.78317 0.79180 0.80116 1.19591 1.21478 1.17176 0.86737 0.90903 0.91276 0.81754 0.79922 0.81142 0.89147 0.94517 0.84086 0.91033 0.95528 0.92203 0.94478 0.93708 0.94053 0.95381 0.91930 0.96666 0.97006 0.92901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.84 113.37 1.12 1.29 16 2 O -0.33 -6.36 9.86 -90.68 -0.89 -7.25 16 3 C 0.16 3.26 6.70 22.76 0.15 3.42 16 4 C -0.26 -4.10 9.11 22.45 0.20 -3.89 16 5 C 0.13 2.12 11.17 84.60 0.95 3.07 16 6 N -0.53 -11.75 10.36 -196.08 -2.03 -13.78 16 7 C 0.14 3.03 10.82 84.62 0.92 3.95 16 8 C -0.17 -3.85 5.42 -19.68 -0.11 -3.95 16 9 C 0.11 2.63 5.54 85.55 0.47 3.10 16 10 N -0.68 -18.47 5.70 -517.94 -2.95 -21.42 16 11 C 0.08 2.49 4.65 86.31 0.40 2.89 16 12 C -0.05 -1.86 0.60 -52.18 -0.03 -1.89 16 13 C -0.12 -4.53 7.89 71.98 0.57 -3.96 16 14 C -0.11 -4.20 8.06 71.98 0.58 -3.62 16 15 C 0.00 -0.09 3.11 29.84 0.09 0.00 16 16 C -0.50 -28.60 8.20 25.60 0.21 -28.39 16 17 H 0.04 2.69 5.92 -2.91 -0.02 2.67 16 18 C 0.00 0.02 5.47 84.66 0.46 0.49 16 19 N -0.96 -60.55 13.96 21.45 0.30 -60.25 16 20 Si 0.94 44.94 27.47 68.60 1.88 46.83 16 21 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 23 H -0.25 -11.02 6.54 99.48 0.65 -10.37 16 24 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 25 H 0.07 0.54 7.71 -2.38 -0.02 0.52 16 26 H 0.07 0.61 7.71 -2.39 -0.02 0.59 16 27 H 0.17 1.54 6.47 -2.91 -0.02 1.52 16 28 H 0.18 1.86 8.06 -2.91 -0.02 1.83 16 29 H 0.17 3.14 8.04 -2.91 -0.02 3.11 16 30 H 0.09 1.88 8.02 -2.39 -0.02 1.86 16 31 H 0.04 0.87 7.92 -2.39 -0.02 0.85 16 32 H 0.34 9.46 6.76 -89.69 -0.61 8.86 16 33 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 34 H 0.03 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.06 1.90 6.57 -2.39 -0.02 1.88 16 36 H 0.04 1.60 6.62 -2.39 -0.02 1.58 16 37 H 0.04 1.59 8.14 -2.38 -0.02 1.57 16 38 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 39 H 0.03 1.24 6.61 -2.39 -0.02 1.22 16 40 H 0.06 2.18 7.60 -2.39 -0.02 2.16 16 41 H 0.02 0.70 7.20 -2.39 -0.02 0.69 16 42 H 0.01 0.54 7.57 -2.39 -0.02 0.52 16 43 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 Total: -1.00 -69.33 342.51 2.62 -66.70 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.33 Total: 16.69 kcal Atomic # 6 Polarization: -33.50 SS G_CDS: 5.98 Total: -27.51 kcal Atomic # 7 Polarization: -90.77 SS G_CDS: -4.68 Total: -95.46 kcal Atomic # 8 Polarization: -6.36 SS G_CDS: -0.89 Total: -7.25 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 1.88 Total: 46.83 kcal Total: -69.33 2.62 -66.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292629256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.530 kcal (2) G-P(sol) polarization free energy of solvation -69.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds