Wall clock time and date at job start Tue Mar 31 2020 00:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 119.99968 * 2 1 4 4 C 1.53039 * 109.45980 * 120.00049 * 3 2 1 5 5 C 1.53189 * 109.30898 * 181.38486 * 4 3 2 6 6 N 1.46927 * 108.77794 * 305.36506 * 5 4 3 7 7 C 1.34779 * 120.62966 * 233.59017 * 6 5 4 8 8 O 1.21587 * 119.99753 * 354.92960 * 7 6 5 9 9 N 1.34772 * 119.99718 * 174.93365 * 7 6 5 10 10 C 1.46505 * 119.99855 * 185.02528 * 9 7 6 11 11 C 1.52997 * 109.47084 * 185.00915 * 10 9 7 12 12 C 1.50703 * 115.54846 * 275.57191 * 11 10 9 13 13 H 1.08001 * 120.00046 * 114.79809 * 12 11 10 14 14 C 1.37880 * 119.99936 * 294.79176 * 12 11 10 15 15 N 1.31514 * 120.00012 * 352.06984 * 14 12 11 16 16 Si 1.86794 * 119.99842 * 172.06663 * 14 12 11 17 17 H 1.48495 * 109.47222 * 90.00347 * 16 14 12 18 18 H 1.48504 * 109.47315 * 210.00714 * 16 14 12 19 19 H 1.48500 * 109.47184 * 330.00119 * 16 14 12 20 20 C 1.53003 * 117.49998 * 129.86847 * 11 10 9 21 21 C 1.52994 * 117.50220 * 61.24592 * 11 10 9 22 22 C 1.46926 * 118.73969 * 53.85908 * 6 5 4 23 23 C 1.53040 * 109.45680 * 240.06692 * 3 2 1 24 24 H 1.08000 * 119.99866 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99524 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99866 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46128 * 0.02562 * 3 2 1 28 28 H 1.08992 * 109.50005 * 61.43269 * 4 3 2 29 29 H 1.09001 * 109.52062 * 301.35076 * 4 3 2 30 30 H 1.09006 * 109.58452 * 185.57652 * 5 4 3 31 31 H 1.08999 * 109.70555 * 65.22423 * 5 4 3 32 32 H 0.96992 * 120.00513 * 5.02821 * 9 7 6 33 33 H 1.09005 * 109.47002 * 305.01105 * 10 9 7 34 34 H 1.08994 * 109.47403 * 65.00747 * 10 9 7 35 35 H 0.97003 * 119.99721 * 185.00083 * 15 14 12 36 36 H 1.08998 * 117.49892 * 359.97438 * 20 11 10 37 37 H 1.08999 * 117.50286 * 145.01905 * 20 11 10 38 38 H 1.09003 * 117.50192 * 214.98195 * 21 11 10 39 39 H 1.09004 * 117.49779 * 359.97169 * 21 11 10 40 40 H 1.09002 * 109.58439 * 65.93114 * 22 6 5 41 41 H 1.08997 * 109.58303 * 186.35610 * 22 6 5 42 42 H 1.08999 * 109.49807 * 298.56707 * 23 3 2 43 43 H 1.09000 * 109.49727 * 58.63392 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9433 1.3859 1.2496 5 6 3.6812 2.7283 1.2637 6 7 4.4139 2.8786 -0.0009 7 6 5.7344 3.1488 -0.0015 8 8 6.3118 3.3617 1.0472 9 7 6.4146 3.1831 -1.1644 10 6 7.8680 3.3673 -1.1577 11 6 8.3726 3.4941 -2.5965 12 6 8.6337 2.1930 -3.3108 13 1 8.0371 1.9185 -4.1682 14 6 9.6343 1.3531 -2.8697 15 7 10.4609 1.7529 -1.9281 16 14 9.8156 -0.3525 -3.6093 17 1 10.7259 -0.2898 -4.7809 18 1 10.3805 -1.2756 -2.5924 19 1 8.4845 -0.8482 -4.0427 20 6 9.2885 4.6755 -2.9224 21 6 7.8452 4.6638 -3.4297 22 6 3.6787 2.7346 -1.2648 23 6 2.9420 1.3866 -1.2505 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3551 2.1335 0.0005 28 1 3.6685 0.5723 1.2373 29 1 2.3198 1.3041 2.1399 30 1 4.3829 2.7509 2.0976 31 1 2.9629 3.5415 1.3687 32 1 5.9420 3.0858 -2.0058 33 1 8.1169 4.2727 -0.6042 34 1 8.3409 2.5086 -0.6812 35 1 11.2084 1.1917 -1.6687 36 1 9.5313 5.3627 -2.1119 37 1 10.0803 4.5119 -3.6535 38 1 7.6872 4.4926 -4.4945 39 1 7.1382 5.3429 -2.9529 40 1 2.9585 3.5468 -1.3631 41 1 4.3789 2.7612 -2.0997 42 1 3.6672 0.5729 -1.2393 43 1 2.3172 1.3049 -2.1400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332205583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:15 Heat of formation + Delta-G solvation = 9.883830 kcal Electronic energy + Delta-G solvation = -22153.480200 eV Core-core repulsion = 19006.697637 eV Total energy + Delta-G solvation = -3146.782563 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04041 -37.90166 -36.64554 -34.52525 -33.33562 -32.04287 -30.93710 -30.86216 -26.47947 -25.41963 -24.46883 -23.13152 -21.37247 -20.95172 -19.98188 -19.35104 -19.05711 -17.85986 -16.14569 -15.70638 -15.23337 -15.03284 -14.64047 -14.53878 -14.22506 -14.10079 -13.57638 -13.44046 -13.39245 -12.70189 -12.53873 -12.25209 -12.15289 -11.67251 -11.51202 -11.29863 -11.00957 -10.95529 -10.92045 -10.87109 -10.52966 -10.50070 -10.29033 -9.69920 -9.49440 -9.37921 -9.04419 -8.59012 -8.50297 -8.20361 -7.91358 -6.07468 -4.14086 2.09427 3.09294 3.26045 3.34381 3.35906 3.76779 4.35337 4.41767 4.54149 4.70807 4.82961 5.07293 5.08674 5.15194 5.24872 5.29539 5.38477 5.44132 5.56044 5.62210 5.78101 5.83291 5.85272 5.98221 6.03128 6.03941 6.24022 6.32731 6.44471 6.49181 6.60465 6.63340 6.69798 6.74059 6.93694 7.06154 7.33655 7.37956 7.52884 7.56669 7.84881 8.35639 8.60108 8.85334 9.20850 9.50643 11.00263 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.004747 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.950272 B = 5897.549558 C = 6621.903277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.142 4.142 3 C -0.060 4.060 4 C -0.126 4.126 5 C 0.132 3.868 6 N -0.636 5.636 7 C 0.702 3.298 8 O -0.600 6.600 9 N -0.726 5.726 10 C 0.181 3.819 11 C 0.035 3.965 12 C -0.500 4.500 13 H 0.060 0.940 14 C 0.073 3.927 15 N -0.873 5.873 16 Si 0.890 3.110 17 H -0.281 1.281 18 H -0.286 1.286 19 H -0.273 1.273 20 C -0.164 4.164 21 C -0.209 4.209 22 C 0.113 3.887 23 C -0.126 4.126 24 H 0.095 0.905 25 H 0.095 0.905 26 H 0.108 0.892 27 H 0.074 0.926 28 H 0.069 0.931 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.058 0.942 32 H 0.392 0.608 33 H 0.038 0.962 34 H 0.077 0.923 35 H 0.262 0.738 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.077 0.923 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.450 -0.476 2.083 17.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.160 4.160 3 C -0.079 4.079 4 C -0.164 4.164 5 C 0.008 3.992 6 N -0.375 5.375 7 C 0.403 3.597 8 O -0.480 6.480 9 N -0.381 5.381 10 C 0.057 3.943 11 C 0.034 3.966 12 C -0.537 4.537 13 H 0.078 0.922 14 C -0.131 4.131 15 N -0.509 5.509 16 Si 0.717 3.283 17 H -0.207 1.207 18 H -0.211 1.211 19 H -0.198 1.198 20 C -0.203 4.203 21 C -0.246 4.246 22 C -0.011 4.011 23 C -0.165 4.165 24 H 0.113 0.887 25 H 0.113 0.887 26 H 0.126 0.874 27 H 0.092 0.908 28 H 0.088 0.912 29 H 0.091 0.909 30 H 0.111 0.889 31 H 0.077 0.923 32 H 0.228 0.772 33 H 0.057 0.943 34 H 0.095 0.905 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.091 0.909 43 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.827 -0.416 3.012 17.099 hybrid contribution -0.031 -1.053 -0.889 1.378 sum -16.857 -1.469 2.123 17.054 Atomic orbital electron populations 1.23816 0.95900 1.01640 1.02169 1.22994 0.95839 0.98383 0.98755 1.20351 0.96647 0.95425 0.95466 1.21951 0.98629 0.98522 0.97335 1.21338 0.95231 0.95769 0.86829 1.47254 1.07219 1.76455 1.06574 1.15962 0.80639 0.78226 0.84860 1.90859 1.68094 1.57820 1.31179 1.45487 1.09625 1.76711 1.06283 1.20885 0.75757 1.00469 0.97146 1.19077 0.97643 0.89172 0.90668 1.20413 1.18204 1.01444 1.13677 0.92179 1.24979 0.95592 0.98007 0.94531 1.69968 1.14203 1.37467 1.29282 0.86630 0.78353 0.84504 0.78771 1.20673 1.21126 1.19831 1.22706 0.92072 1.03239 1.02249 1.22876 0.97539 1.04772 0.99409 1.21667 0.95877 0.96865 0.86690 1.22009 0.98841 0.98148 0.97491 0.88702 0.88699 0.87441 0.90778 0.91236 0.90934 0.88900 0.92331 0.77159 0.94318 0.90519 0.92764 0.91624 0.89991 0.90444 0.91500 0.91727 0.89844 0.90937 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.58 14.32 29.01 0.42 -1.17 16 2 C -0.14 -1.27 8.77 -36.03 -0.32 -1.59 16 3 C -0.06 -0.58 2.44 -91.73 -0.22 -0.80 16 4 C -0.13 -1.34 5.34 -26.61 -0.14 -1.49 16 5 C 0.13 1.70 6.42 -3.71 -0.02 1.68 16 6 N -0.64 -9.64 2.97 -178.23 -0.53 -10.16 16 7 C 0.70 14.01 8.29 -86.92 -0.72 13.29 16 8 O -0.60 -14.28 15.76 5.29 0.08 -14.20 16 9 N -0.73 -14.62 5.37 -65.22 -0.35 -14.97 16 10 C 0.18 4.28 5.53 -4.04 -0.02 4.26 16 11 C 0.04 0.84 1.32 -155.66 -0.21 0.63 16 12 C -0.50 -13.00 8.82 -34.44 -0.30 -13.31 16 13 H 0.06 1.54 7.83 -52.49 -0.41 1.13 16 14 C 0.07 1.95 5.22 -17.82 -0.09 1.86 16 15 N -0.87 -24.46 12.60 55.43 0.70 -23.76 16 16 Si 0.89 20.68 29.55 -169.99 -5.02 15.66 16 17 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 18 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 19 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 20 C -0.16 -3.74 9.88 -26.73 -0.26 -4.00 16 21 C -0.21 -4.29 9.78 -26.74 -0.26 -4.55 16 22 C 0.11 1.34 6.46 -3.49 -0.02 1.32 16 23 C -0.13 -1.32 5.36 -26.39 -0.14 -1.46 16 24 H 0.09 0.69 7.83 -52.49 -0.41 0.28 16 25 H 0.09 0.67 8.06 -52.49 -0.42 0.24 16 26 H 0.11 0.97 8.06 -52.49 -0.42 0.55 16 27 H 0.07 0.66 7.78 -51.93 -0.40 0.25 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.09 1.39 7.04 -51.93 -0.37 1.02 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.39 7.07 5.87 -40.82 -0.24 6.83 16 33 H 0.04 0.94 7.87 -51.93 -0.41 0.53 16 34 H 0.08 2.10 7.26 -51.93 -0.38 1.72 16 35 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 36 H 0.07 1.44 8.06 -51.93 -0.42 1.02 16 37 H 0.08 1.93 8.14 -51.93 -0.42 1.51 16 38 H 0.08 1.54 8.14 -51.93 -0.42 1.12 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.84 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.08 1.03 5.56 -51.93 -0.29 0.74 16 42 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 348.33 15.07 5.25 5.25 Total: -1.00 -30.10 348.33 -9.31 -39.40 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: -7.11 Total: 8.11 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: -2.32 Total: -5.33 kcal Atomic # 7 Polarization: -48.71 SS G_CDS: -0.18 Total: -48.89 kcal Atomic # 8 Polarization: -14.28 SS G_CDS: 0.08 Total: -14.20 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.10 -9.31 -39.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332205583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.288 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.189 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.404 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.884 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds