Wall clock time and date at job start Tue Mar 31 2020 00:11:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31006 * 1 3 3 C 1.50704 * 119.99968 * 2 1 4 4 C 1.53039 * 109.45980 * 120.00049 * 3 2 1 5 5 C 1.53189 * 109.30898 * 181.38486 * 4 3 2 6 6 N 1.46927 * 108.77794 * 305.36506 * 5 4 3 7 7 C 1.34779 * 120.62966 * 233.59017 * 6 5 4 8 8 O 1.21587 * 119.99753 * 354.92960 * 7 6 5 9 9 N 1.34772 * 119.99718 * 174.93365 * 7 6 5 10 10 C 1.46505 * 119.99855 * 185.02528 * 9 7 6 11 11 C 1.52997 * 109.47084 * 185.00915 * 10 9 7 12 12 C 1.50703 * 115.54846 * 275.57191 * 11 10 9 13 13 H 1.08001 * 120.00046 * 114.79809 * 12 11 10 14 14 C 1.37880 * 119.99936 * 294.79176 * 12 11 10 15 15 N 1.31514 * 120.00012 * 352.06984 * 14 12 11 16 16 Si 1.86794 * 119.99842 * 172.06663 * 14 12 11 17 17 H 1.48495 * 109.47222 * 90.00347 * 16 14 12 18 18 H 1.48504 * 109.47315 * 210.00714 * 16 14 12 19 19 H 1.48500 * 109.47184 * 330.00119 * 16 14 12 20 20 C 1.53003 * 117.49998 * 129.86847 * 11 10 9 21 21 C 1.52994 * 117.50220 * 61.24592 * 11 10 9 22 22 C 1.46926 * 118.73969 * 53.85908 * 6 5 4 23 23 C 1.53040 * 109.45680 * 240.06692 * 3 2 1 24 24 H 1.08000 * 119.99866 * 0.02562 * 1 2 3 25 25 H 1.08000 * 119.99524 * 180.02562 * 1 2 3 26 26 H 1.08000 * 119.99866 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.46128 * 0.02562 * 3 2 1 28 28 H 1.08992 * 109.50005 * 61.43269 * 4 3 2 29 29 H 1.09001 * 109.52062 * 301.35076 * 4 3 2 30 30 H 1.09006 * 109.58452 * 185.57652 * 5 4 3 31 31 H 1.08999 * 109.70555 * 65.22423 * 5 4 3 32 32 H 0.96992 * 120.00513 * 5.02821 * 9 7 6 33 33 H 1.09005 * 109.47002 * 305.01105 * 10 9 7 34 34 H 1.08994 * 109.47403 * 65.00747 * 10 9 7 35 35 H 0.97003 * 119.99721 * 185.00083 * 15 14 12 36 36 H 1.08998 * 117.49892 * 359.97438 * 20 11 10 37 37 H 1.08999 * 117.50286 * 145.01905 * 20 11 10 38 38 H 1.09003 * 117.50192 * 214.98195 * 21 11 10 39 39 H 1.09004 * 117.49779 * 359.97169 * 21 11 10 40 40 H 1.09002 * 109.58439 * 65.93114 * 22 6 5 41 41 H 1.08997 * 109.58303 * 186.35610 * 22 6 5 42 42 H 1.08999 * 109.49807 * 298.56707 * 23 3 2 43 43 H 1.09000 * 109.49727 * 58.63392 * 23 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0636 1.3051 0.0000 4 6 2.9433 1.3859 1.2496 5 6 3.6812 2.7283 1.2637 6 7 4.4139 2.8786 -0.0009 7 6 5.7344 3.1488 -0.0015 8 8 6.3118 3.3617 1.0472 9 7 6.4146 3.1831 -1.1644 10 6 7.8680 3.3673 -1.1577 11 6 8.3726 3.4941 -2.5965 12 6 8.6337 2.1930 -3.3108 13 1 8.0371 1.9185 -4.1682 14 6 9.6343 1.3531 -2.8697 15 7 10.4609 1.7529 -1.9281 16 14 9.8156 -0.3525 -3.6093 17 1 10.7259 -0.2898 -4.7809 18 1 10.3805 -1.2756 -2.5924 19 1 8.4845 -0.8482 -4.0427 20 6 9.2885 4.6755 -2.9224 21 6 7.8452 4.6638 -3.4297 22 6 3.6787 2.7346 -1.2648 23 6 2.9420 1.3866 -1.2505 24 1 -0.5400 0.9353 -0.0004 25 1 -0.5399 -0.9354 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 1.3551 2.1335 0.0005 28 1 3.6685 0.5723 1.2373 29 1 2.3198 1.3041 2.1399 30 1 4.3829 2.7509 2.0976 31 1 2.9629 3.5415 1.3687 32 1 5.9420 3.0858 -2.0058 33 1 8.1169 4.2727 -0.6042 34 1 8.3409 2.5086 -0.6812 35 1 11.2084 1.1917 -1.6687 36 1 9.5313 5.3627 -2.1119 37 1 10.0803 4.5119 -3.6535 38 1 7.6872 4.4926 -4.4945 39 1 7.1382 5.3429 -2.9529 40 1 2.9585 3.5468 -1.3631 41 1 4.3789 2.7612 -2.0997 42 1 3.6672 0.5729 -1.2393 43 1 2.3172 1.3049 -2.1400 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332205583.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:11:15 Heat of formation + Delta-G solvation = -6.987872 kcal Electronic energy + Delta-G solvation = -22154.211812 eV Core-core repulsion = 19006.697637 eV Total energy + Delta-G solvation = -3147.514175 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.40647 -39.17869 -38.32468 -35.62730 -34.91377 -34.04815 -31.96901 -31.78149 -28.20606 -27.19394 -25.72322 -24.13131 -23.03646 -22.14646 -21.22571 -20.64619 -20.39705 -19.29378 -17.96200 -17.15886 -16.76249 -16.45547 -15.98702 -15.70237 -15.35294 -15.34340 -15.06861 -14.78760 -14.64610 -14.22248 -13.72575 -13.47638 -13.34923 -13.26027 -12.96620 -12.90469 -12.78602 -12.37114 -12.23151 -12.04758 -11.80279 -11.68348 -11.48796 -11.40265 -11.09469 -10.96500 -10.51244 -10.14813 -10.09211 -10.03607 -9.37356 -8.10833 -6.22090 1.40892 1.44152 1.45732 1.52147 1.73213 2.21198 2.41695 3.02142 3.16704 3.55727 3.77078 3.82597 3.95537 4.16715 4.23390 4.34328 4.37994 4.47260 4.54252 4.55750 4.65516 4.70757 4.80407 4.84171 4.89978 4.94491 4.96010 4.98184 5.09873 5.14819 5.16828 5.25302 5.42377 5.56645 5.58375 5.64484 5.74214 5.81703 5.82119 5.93919 6.04560 6.36770 6.82849 7.10816 7.45531 7.64879 8.96834 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017573 B = 0.004747 C = 0.004227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1592.950272 B = 5897.549558 C = 6621.903277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.159 4.159 3 C -0.053 4.053 4 C -0.118 4.118 5 C 0.127 3.873 6 N -0.628 5.628 7 C 0.695 3.305 8 O -0.647 6.647 9 N -0.720 5.720 10 C 0.201 3.799 11 C 0.010 3.990 12 C -0.505 4.505 13 H 0.063 0.937 14 C 0.024 3.976 15 N -0.908 5.908 16 Si 0.949 3.051 17 H -0.274 1.274 18 H -0.292 1.292 19 H -0.264 1.264 20 C -0.175 4.175 21 C -0.171 4.171 22 C 0.107 3.893 23 C -0.122 4.122 24 H 0.107 0.893 25 H 0.103 0.897 26 H 0.100 0.900 27 H 0.092 0.908 28 H 0.046 0.954 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.404 0.596 33 H 0.025 0.975 34 H 0.031 0.969 35 H 0.260 0.740 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.089 0.911 40 H 0.095 0.905 41 H 0.078 0.922 42 H 0.049 0.951 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.581 -0.463 0.752 20.600 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.177 4.177 3 C -0.072 4.072 4 C -0.157 4.157 5 C 0.004 3.996 6 N -0.365 5.365 7 C 0.396 3.604 8 O -0.530 6.530 9 N -0.376 5.376 10 C 0.076 3.924 11 C 0.009 3.991 12 C -0.543 4.543 13 H 0.082 0.918 14 C -0.176 4.176 15 N -0.545 5.545 16 Si 0.775 3.225 17 H -0.200 1.200 18 H -0.218 1.218 19 H -0.188 1.188 20 C -0.213 4.213 21 C -0.208 4.208 22 C -0.015 4.015 23 C -0.160 4.160 24 H 0.125 0.875 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.110 0.890 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.083 0.917 31 H 0.104 0.896 32 H 0.242 0.758 33 H 0.043 0.957 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.113 0.887 41 H 0.096 0.904 42 H 0.068 0.932 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -20.031 -0.414 1.639 20.102 hybrid contribution 0.852 -1.042 -0.451 1.420 sum -19.179 -1.456 1.188 19.271 Atomic orbital electron populations 1.24002 0.95478 1.02674 0.99930 1.22901 0.96245 0.97788 1.00780 1.20301 0.96415 0.96514 0.93935 1.21891 0.98382 0.96130 0.99269 1.21540 0.94946 0.98148 0.84919 1.47341 1.05630 1.74721 1.08843 1.16181 0.82152 0.78110 0.83921 1.90822 1.69665 1.59829 1.32650 1.45228 1.08282 1.76998 1.07125 1.20357 0.77587 0.97697 0.96743 1.19048 0.99703 0.89426 0.90933 1.20734 1.17661 1.02371 1.13541 0.91848 1.25702 0.95595 1.01279 0.95060 1.70096 1.14865 1.38652 1.30877 0.85697 0.78604 0.80360 0.77888 1.19997 1.21825 1.18838 1.22669 0.93194 1.03045 1.02427 1.22882 0.95975 1.02211 0.99692 1.21963 0.96041 0.98863 0.84644 1.21984 0.98637 0.96281 0.99143 0.87519 0.87833 0.88190 0.88962 0.93468 0.88908 0.91653 0.89604 0.75756 0.95687 0.95020 0.93144 0.91314 0.91301 0.89118 0.89308 0.88738 0.90402 0.93169 0.88586 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.31 14.32 67.77 0.97 -1.34 16 2 C -0.16 -2.46 8.77 25.64 0.22 -2.23 16 3 C -0.05 -0.87 2.44 -11.51 -0.03 -0.90 16 4 C -0.12 -2.35 5.34 30.67 0.16 -2.19 16 5 C 0.13 3.15 6.42 86.36 0.55 3.71 16 6 N -0.63 -18.47 2.97 -836.06 -2.48 -20.95 16 7 C 0.69 28.14 8.29 179.06 1.49 29.63 16 8 O -0.65 -32.00 15.76 -3.99 -0.06 -32.06 16 9 N -0.72 -29.18 5.37 -478.53 -2.57 -31.76 16 10 C 0.20 9.81 5.53 86.38 0.48 10.29 16 11 C 0.01 0.47 1.32 -52.93 -0.07 0.40 16 12 C -0.51 -26.27 8.82 25.60 0.23 -26.05 16 13 H 0.06 3.18 7.83 -2.91 -0.02 3.16 16 14 C 0.02 1.31 5.22 84.66 0.44 1.76 16 15 N -0.91 -52.36 12.60 21.45 0.27 -52.09 16 16 Si 0.95 42.75 29.55 68.60 2.03 44.78 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 18 H -0.29 -13.37 7.11 99.48 0.71 -12.67 16 19 H -0.26 -11.38 7.11 99.48 0.71 -10.67 16 20 C -0.17 -7.94 9.88 30.59 0.30 -7.64 16 21 C -0.17 -6.67 9.78 30.59 0.30 -6.37 16 22 C 0.11 2.28 6.46 86.51 0.56 2.84 16 23 C -0.12 -2.26 5.36 30.82 0.17 -2.09 16 24 H 0.11 1.10 7.83 -2.91 -0.02 1.08 16 25 H 0.10 1.13 8.06 -2.91 -0.02 1.10 16 26 H 0.10 1.68 8.06 -2.91 -0.02 1.65 16 27 H 0.09 1.22 7.78 -2.39 -0.02 1.20 16 28 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.06 2.00 7.04 -2.38 -0.02 1.98 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.40 14.20 5.87 -92.71 -0.54 13.66 16 33 H 0.02 1.26 7.87 -2.38 -0.02 1.24 16 34 H 0.03 1.82 7.26 -2.39 -0.02 1.80 16 35 H 0.26 14.44 8.32 -92.71 -0.77 13.67 16 36 H 0.07 3.03 8.06 -2.39 -0.02 3.01 16 37 H 0.07 3.27 8.14 -2.39 -0.02 3.25 16 38 H 0.09 3.33 8.14 -2.39 -0.02 3.31 16 39 H 0.09 3.10 8.14 -2.38 -0.02 3.08 16 40 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 41 H 0.08 1.75 5.56 -2.39 -0.01 1.73 16 42 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 43 H 0.10 1.39 8.14 -2.39 -0.02 1.37 16 Total: -1.00 -67.08 348.33 3.39 -63.69 By element: Atomic # 1 Polarization: 28.14 SS G_CDS: 0.43 Total: 28.57 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: 5.77 Total: -0.19 kcal Atomic # 7 Polarization: -100.01 SS G_CDS: -4.78 Total: -104.79 kcal Atomic # 8 Polarization: -32.00 SS G_CDS: -0.06 Total: -32.06 kcal Atomic # 14 Polarization: 42.75 SS G_CDS: 2.03 Total: 44.78 kcal Total: -67.08 3.39 -63.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332205583.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.706 kcal (2) G-P(sol) polarization free energy of solvation -67.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.694 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.988 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds