Wall clock time and date at job start Tue Mar 31 2020 00:18:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46921 * 2 1 4 4 C 1.53004 * 109.47273 * 119.99583 * 2 1 3 5 5 C 1.52999 * 109.47203 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46837 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47437 * 60.00141 * 6 5 4 8 8 C 1.50702 * 109.47287 * 179.97438 * 7 6 5 9 9 O 1.21291 * 120.00080 * 87.51817 * 8 7 6 10 10 N 1.34780 * 119.99790 * 267.52775 * 8 7 6 11 11 C 1.37093 * 119.99914 * 184.24082 * 10 8 7 12 12 H 1.08003 * 120.00261 * 14.98011 * 11 10 8 13 13 C 1.38946 * 120.00152 * 194.98754 * 11 10 8 14 14 N 1.31412 * 120.00223 * 19.08656 * 13 11 10 15 15 Si 1.86798 * 120.00266 * 199.09092 * 13 11 10 16 16 H 1.48496 * 109.47399 * 94.97214 * 15 13 11 17 17 H 1.48503 * 109.47195 * 214.97805 * 15 13 11 18 18 H 1.48503 * 109.46830 * 334.97250 * 15 13 11 19 19 C 1.46500 * 120.00052 * 4.23055 * 10 8 7 20 20 C 1.47199 * 109.46541 * 83.71090 * 19 10 8 21 21 N 6.84984 * 151.56364 * 131.45547 * 2 1 3 22 22 C 1.52999 * 109.46992 * 299.99764 * 7 6 5 23 23 C 1.52997 * 109.47207 * 59.99901 * 22 7 6 24 24 H 1.09001 * 109.47021 * 299.99722 * 1 2 3 25 25 H 1.08992 * 109.47370 * 60.00137 * 1 2 3 26 26 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47341 * 239.99926 * 2 1 3 28 28 H 1.08997 * 109.47306 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47397 * 300.00420 * 3 2 1 30 30 H 1.09013 * 109.46956 * 59.99888 * 3 2 1 31 31 H 1.09001 * 109.47204 * 300.00920 * 4 2 1 32 32 H 1.09001 * 109.46743 * 300.00482 * 5 4 2 33 33 H 1.08989 * 109.47116 * 60.00376 * 5 4 2 34 34 H 1.08997 * 109.46978 * 299.99666 * 6 5 4 35 35 H 1.09002 * 109.46574 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47424 * 59.99798 * 7 6 5 37 37 H 0.96998 * 120.00507 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47014 * 203.70590 * 19 10 8 39 39 H 1.08996 * 109.47268 * 323.71358 * 19 10 8 40 40 H 1.09001 * 109.47478 * 300.00015 * 22 7 6 41 41 H 1.09003 * 109.47251 * 180.02562 * 22 7 6 42 42 H 1.09006 * 109.47404 * 179.97438 * 23 22 7 43 43 H 1.09001 * 109.47269 * 60.00322 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0800 -1.4423 2.4986 7 6 3.5706 -2.8850 2.4978 8 6 4.0734 -3.5960 3.7277 9 8 3.4403 -3.5420 4.7609 10 7 5.2267 -4.2918 3.6796 11 6 5.6401 -5.0098 4.7719 12 1 4.9475 -5.2206 5.5733 13 6 6.9502 -5.4663 4.8480 14 7 7.8810 -4.9200 4.0982 15 14 7.3886 -6.8566 6.0160 16 1 7.3553 -8.1478 5.2833 17 1 8.7510 -6.6327 6.5629 18 1 6.4079 -6.8945 7.1305 19 6 6.0385 -4.2810 2.4601 20 6 6.8936 -3.0829 2.4507 21 7 7.5534 -2.1594 2.4446 22 6 2.0406 -2.8855 2.4975 23 6 1.5306 -2.1639 1.2485 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6765 1.9564 0.8901 31 1 1.6766 -0.2074 2.1393 32 1 3.9337 -1.2342 0.3596 33 1 3.9330 0.3071 1.2498 34 1 3.7163 -0.9290 3.3887 35 1 5.1700 -1.4415 2.4990 36 1 3.9343 -3.3983 1.6077 37 1 8.7957 -5.2384 4.1516 38 1 6.6633 -5.1736 2.4317 39 1 5.3843 -4.2673 1.5883 40 1 1.6768 -2.3723 3.3876 41 1 1.6776 -3.9134 2.4973 42 1 0.4405 -2.1646 1.2480 43 1 1.8942 -2.6771 0.3583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338040870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:15 Heat of formation + Delta-G solvation = -30.388035 kcal Electronic energy + Delta-G solvation = -22645.285827 eV Core-core repulsion = 19496.756945 eV Total energy + Delta-G solvation = -3148.528882 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.73650 -38.12089 -35.82484 -34.77967 -34.16465 -31.81748 -30.66640 -29.47505 -27.42126 -27.17491 -25.11378 -23.14418 -22.13912 -20.42514 -19.65778 -18.74954 -17.84960 -16.48804 -16.22026 -15.56774 -14.80623 -14.32678 -14.21137 -14.00993 -13.81039 -13.58060 -13.27858 -12.98679 -12.85984 -12.74013 -12.26905 -12.19262 -11.91719 -11.70043 -11.60807 -11.39314 -11.19288 -11.14541 -11.11128 -10.99246 -10.80006 -10.67148 -10.50270 -10.39112 -10.31679 -10.09506 -9.84022 -9.60538 -9.23948 -8.42377 -8.03687 -6.47312 -3.97309 3.10639 3.22804 3.27490 3.57560 3.80746 4.01462 4.12805 4.63036 4.77392 4.82509 4.89338 4.91818 5.07299 5.20085 5.36637 5.39860 5.49403 5.52840 5.60078 5.60727 5.73549 5.76748 5.78635 5.80569 5.85935 5.88405 6.01443 6.05477 6.11601 6.15980 6.28670 6.34458 6.37088 6.46337 6.51509 6.55228 6.62834 6.69520 6.79923 7.48232 7.92854 8.31772 8.73692 9.03477 9.23308 9.78754 10.57814 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031028 B = 0.004613 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.194591 B = 6068.912652 C = 6671.597303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.082 4.082 5 C -0.110 4.110 6 C -0.110 4.110 7 C -0.101 4.101 8 C 0.460 3.540 9 O -0.574 6.574 10 N -0.446 5.446 11 C -0.309 4.309 12 H 0.108 0.892 13 C 0.029 3.971 14 N -0.884 5.884 15 Si 0.928 3.072 16 H -0.276 1.276 17 H -0.285 1.285 18 H -0.269 1.269 19 C 0.215 3.785 20 C 0.250 3.750 21 N -0.475 5.475 22 C -0.098 4.098 23 C -0.113 4.113 24 H 0.052 0.948 25 H 0.049 0.951 26 H 0.058 0.942 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.049 0.951 30 H 0.052 0.948 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.080 0.920 37 H 0.272 0.728 38 H 0.135 0.865 39 H 0.082 0.918 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.063 0.937 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.038 4.325 -10.617 15.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.101 4.101 5 C -0.148 4.148 6 C -0.148 4.148 7 C -0.123 4.123 8 C 0.249 3.751 9 O -0.457 6.457 10 N -0.166 5.166 11 C -0.436 4.436 12 H 0.126 0.874 13 C -0.173 4.173 14 N -0.524 5.524 15 Si 0.755 3.245 16 H -0.202 1.202 17 H -0.211 1.211 18 H -0.193 1.193 19 C 0.088 3.912 20 C -0.068 4.068 21 N -0.156 5.156 22 C -0.136 4.136 23 C -0.150 4.150 24 H 0.072 0.928 25 H 0.068 0.932 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.077 0.923 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.153 0.847 39 H 0.100 0.900 40 H 0.089 0.911 41 H 0.080 0.920 42 H 0.081 0.919 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.172 5.663 -10.102 14.773 hybrid contribution 0.420 -1.025 0.615 1.267 sum -8.752 4.638 -9.487 13.715 Atomic orbital electron populations 1.21895 0.95591 1.01811 1.01283 1.21148 0.95442 0.96026 0.98431 1.21904 1.01393 0.96131 1.01273 1.21230 0.95468 0.95854 0.97536 1.21611 0.94870 1.00249 0.98036 1.21489 1.00978 0.94031 0.98285 1.21253 0.96863 0.96602 0.97553 1.20182 0.83651 0.81524 0.89750 1.90523 1.58860 1.63575 1.32713 1.43694 1.18158 1.42840 1.11900 1.19792 0.95922 1.27919 0.99965 0.87408 1.25254 0.94804 0.98846 0.98444 1.69867 1.01947 1.39296 1.41272 0.85860 0.77872 0.80645 0.80106 1.20225 1.21098 1.19343 1.18892 0.91387 0.92909 0.88022 1.29314 0.92738 0.93279 0.91440 1.80860 1.10989 1.13853 1.09860 1.21329 0.93602 1.00594 0.98062 1.21656 1.00038 0.95070 0.98286 0.92841 0.93232 0.92314 0.91386 0.92287 0.93202 0.92847 0.91239 0.92098 0.91887 0.91703 0.91506 0.90222 0.91703 0.84732 0.89998 0.91074 0.91996 0.91877 0.92182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.84 37.16 0.33 -0.99 16 2 C -0.09 -0.90 2.51 -90.62 -0.23 -1.13 16 3 C -0.15 -1.41 8.84 37.16 0.33 -1.08 16 4 C -0.08 -0.96 1.78 -90.62 -0.16 -1.12 16 5 C -0.11 -1.45 4.85 -26.73 -0.13 -1.58 16 6 C -0.11 -1.85 5.16 -26.73 -0.14 -1.99 16 7 C -0.10 -1.75 1.91 -91.77 -0.17 -1.92 16 8 C 0.46 10.46 6.58 -10.98 -0.07 10.39 16 9 O -0.57 -15.15 15.88 5.55 0.09 -15.06 16 10 N -0.45 -10.48 2.61 -117.94 -0.31 -10.78 16 11 C -0.31 -8.02 9.37 -14.94 -0.14 -8.16 16 12 H 0.11 2.96 7.37 -52.48 -0.39 2.58 16 13 C 0.03 0.72 4.96 -17.47 -0.09 0.63 16 14 N -0.88 -22.25 9.29 55.50 0.52 -21.74 16 15 Si 0.93 19.78 29.59 -169.99 -5.03 14.75 16 16 H -0.28 -5.69 7.11 56.52 0.40 -5.29 16 17 H -0.29 -6.17 7.11 56.52 0.40 -5.77 16 18 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 19 C 0.22 4.33 4.92 -6.83 -0.03 4.30 16 20 C 0.25 5.52 11.78 -20.79 -0.24 5.27 16 21 N -0.48 -11.18 18.15 42.11 0.76 -10.41 16 22 C -0.10 -1.50 4.83 -26.73 -0.13 -1.63 16 23 C -0.11 -1.34 4.85 -26.73 -0.13 -1.47 16 24 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.06 0.58 6.43 -51.93 -0.33 0.24 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 31 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.80 6.43 -51.93 -0.33 0.47 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.07 1.27 5.54 -51.93 -0.29 0.98 16 36 H 0.08 1.22 5.90 -51.93 -0.31 0.92 16 37 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 38 H 0.14 2.80 6.14 -51.93 -0.32 2.48 16 39 H 0.08 1.29 5.96 -51.93 -0.31 0.98 16 40 H 0.07 1.21 7.86 -51.93 -0.41 0.80 16 41 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 42 H 0.06 0.67 6.43 -51.93 -0.33 0.34 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 LS Contribution 332.21 15.07 5.01 5.01 Total: -1.00 -29.60 332.21 -6.69 -36.28 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.71 Total: 2.44 kcal Atomic # 6 Polarization: 0.53 SS G_CDS: -1.01 Total: -0.48 kcal Atomic # 7 Polarization: -43.91 SS G_CDS: 0.97 Total: -42.94 kcal Atomic # 8 Polarization: -15.15 SS G_CDS: 0.09 Total: -15.06 kcal Atomic # 14 Polarization: 19.78 SS G_CDS: -5.03 Total: 14.75 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.60 -6.69 -36.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338040870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.894 kcal (2) G-P(sol) polarization free energy of solvation -29.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.282 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds