Wall clock time and date at job start Tue Mar 31 2020 00:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46921 * 2 1 4 4 C 1.53004 * 109.47273 * 119.99583 * 2 1 3 5 5 C 1.52999 * 109.47203 * 180.02562 * 4 2 1 6 6 C 1.52998 * 109.46837 * 180.02562 * 5 4 2 7 7 C 1.52996 * 109.47437 * 60.00141 * 6 5 4 8 8 C 1.50702 * 109.47287 * 179.97438 * 7 6 5 9 9 O 1.21291 * 120.00080 * 87.51817 * 8 7 6 10 10 N 1.34780 * 119.99790 * 267.52775 * 8 7 6 11 11 C 1.37093 * 119.99914 * 184.24082 * 10 8 7 12 12 H 1.08003 * 120.00261 * 14.98011 * 11 10 8 13 13 C 1.38946 * 120.00152 * 194.98754 * 11 10 8 14 14 N 1.31412 * 120.00223 * 19.08656 * 13 11 10 15 15 Si 1.86798 * 120.00266 * 199.09092 * 13 11 10 16 16 H 1.48496 * 109.47399 * 94.97214 * 15 13 11 17 17 H 1.48503 * 109.47195 * 214.97805 * 15 13 11 18 18 H 1.48503 * 109.46830 * 334.97250 * 15 13 11 19 19 C 1.46500 * 120.00052 * 4.23055 * 10 8 7 20 20 C 1.47199 * 109.46541 * 83.71090 * 19 10 8 21 21 N 6.84984 * 151.56364 * 131.45547 * 2 1 3 22 22 C 1.52999 * 109.46992 * 299.99764 * 7 6 5 23 23 C 1.52997 * 109.47207 * 59.99901 * 22 7 6 24 24 H 1.09001 * 109.47021 * 299.99722 * 1 2 3 25 25 H 1.08992 * 109.47370 * 60.00137 * 1 2 3 26 26 H 1.09003 * 109.46903 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47341 * 239.99926 * 2 1 3 28 28 H 1.08997 * 109.47306 * 179.97438 * 3 2 1 29 29 H 1.08994 * 109.47397 * 300.00420 * 3 2 1 30 30 H 1.09013 * 109.46956 * 59.99888 * 3 2 1 31 31 H 1.09001 * 109.47204 * 300.00920 * 4 2 1 32 32 H 1.09001 * 109.46743 * 300.00482 * 5 4 2 33 33 H 1.08989 * 109.47116 * 60.00376 * 5 4 2 34 34 H 1.08997 * 109.46978 * 299.99666 * 6 5 4 35 35 H 1.09002 * 109.46574 * 180.02562 * 6 5 4 36 36 H 1.08997 * 109.47424 * 59.99798 * 7 6 5 37 37 H 0.96998 * 120.00507 * 179.97438 * 14 13 11 38 38 H 1.09000 * 109.47014 * 203.70590 * 19 10 8 39 39 H 1.08996 * 109.47268 * 323.71358 * 19 10 8 40 40 H 1.09001 * 109.47478 * 300.00015 * 22 7 6 41 41 H 1.09003 * 109.47251 * 180.02562 * 22 7 6 42 42 H 1.09006 * 109.47404 * 179.97438 * 23 22 7 43 43 H 1.09001 * 109.47269 * 60.00322 * 23 22 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 1.2493 5 6 3.5701 -0.7206 1.2496 6 6 4.0800 -1.4423 2.4986 7 6 3.5706 -2.8850 2.4978 8 6 4.0734 -3.5960 3.7277 9 8 3.4403 -3.5420 4.7609 10 7 5.2267 -4.2918 3.6796 11 6 5.6401 -5.0098 4.7719 12 1 4.9475 -5.2206 5.5733 13 6 6.9502 -5.4663 4.8480 14 7 7.8810 -4.9200 4.0982 15 14 7.3886 -6.8566 6.0160 16 1 7.3553 -8.1478 5.2833 17 1 8.7510 -6.6327 6.5629 18 1 6.4079 -6.8945 7.1305 19 6 6.0385 -4.2810 2.4601 20 6 6.8936 -3.0829 2.4507 21 7 7.5534 -2.1594 2.4446 22 6 2.0406 -2.8855 2.4975 23 6 1.5306 -2.1639 1.2485 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8899 28 1 3.1299 1.4426 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6765 1.9564 0.8901 31 1 1.6766 -0.2074 2.1393 32 1 3.9337 -1.2342 0.3596 33 1 3.9330 0.3071 1.2498 34 1 3.7163 -0.9290 3.3887 35 1 5.1700 -1.4415 2.4990 36 1 3.9343 -3.3983 1.6077 37 1 8.7957 -5.2384 4.1516 38 1 6.6633 -5.1736 2.4317 39 1 5.3843 -4.2673 1.5883 40 1 1.6768 -2.3723 3.3876 41 1 1.6776 -3.9134 2.4973 42 1 0.4405 -2.1646 1.2480 43 1 1.8942 -2.6771 0.3583 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338040870.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:18:14 Heat of formation + Delta-G solvation = -45.891399 kcal Electronic energy + Delta-G solvation = -22645.958103 eV Core-core repulsion = 19496.756945 eV Total energy + Delta-G solvation = -3149.201158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.23469 -39.42713 -37.62814 -36.30382 -35.61689 -33.69679 -31.80768 -30.66453 -29.15677 -27.91876 -26.86274 -24.44062 -23.28114 -21.67948 -20.55510 -20.31735 -19.69538 -18.17864 -17.93801 -16.85161 -16.41602 -15.85027 -15.37958 -15.28709 -15.06928 -14.94172 -14.63552 -14.37812 -14.25291 -14.01155 -13.71947 -13.41159 -13.25599 -13.18928 -12.99467 -12.90435 -12.55339 -12.43698 -12.39676 -12.32018 -12.12494 -11.96505 -11.92317 -11.89582 -11.44301 -11.20733 -11.13840 -10.98681 -10.68934 -10.21385 -9.93906 -8.39229 -5.96449 1.38677 1.46773 1.57421 1.81083 2.04940 2.26521 2.35038 2.99688 3.10921 3.55772 3.74710 3.78697 3.82321 4.09375 4.15589 4.24078 4.30376 4.45816 4.49060 4.61979 4.65087 4.68205 4.73935 4.80582 4.90976 4.93225 4.96536 5.08684 5.10614 5.16847 5.20386 5.23472 5.30737 5.35280 5.39221 5.45146 5.47523 5.52907 5.64737 5.72797 6.03597 6.41404 6.98280 7.12492 7.36606 7.94399 8.63196 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031028 B = 0.004613 C = 0.004196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.194591 B = 6068.912652 C = 6671.597303 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.086 4.086 3 C -0.151 4.151 4 C -0.079 4.079 5 C -0.103 4.103 6 C -0.105 4.105 7 C -0.091 4.091 8 C 0.450 3.550 9 O -0.622 6.622 10 N -0.457 5.457 11 C -0.341 4.341 12 H 0.080 0.920 13 C 0.004 3.996 14 N -0.896 5.896 15 Si 0.988 3.012 16 H -0.258 1.258 17 H -0.286 1.286 18 H -0.279 1.279 19 C 0.216 3.784 20 C 0.260 3.740 21 N -0.505 5.505 22 C -0.094 4.094 23 C -0.104 4.104 24 H 0.047 0.953 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.053 0.947 29 H 0.062 0.938 30 H 0.047 0.953 31 H 0.055 0.945 32 H 0.077 0.923 33 H 0.067 0.933 34 H 0.039 0.961 35 H 0.044 0.956 36 H 0.108 0.892 37 H 0.275 0.725 38 H 0.131 0.869 39 H 0.133 0.867 40 H 0.045 0.955 41 H 0.061 0.939 42 H 0.080 0.920 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.642 3.962 -13.047 17.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 C -0.208 4.208 4 C -0.098 4.098 5 C -0.140 4.140 6 C -0.143 4.143 7 C -0.113 4.113 8 C 0.241 3.759 9 O -0.507 6.507 10 N -0.176 5.176 11 C -0.468 4.468 12 H 0.098 0.902 13 C -0.197 4.197 14 N -0.535 5.535 15 Si 0.812 3.188 16 H -0.182 1.182 17 H -0.212 1.212 18 H -0.204 1.204 19 C 0.090 3.910 20 C -0.057 4.057 21 N -0.185 5.185 22 C -0.132 4.132 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.096 0.904 28 H 0.072 0.928 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.074 0.926 32 H 0.096 0.904 33 H 0.085 0.915 34 H 0.058 0.942 35 H 0.063 0.937 36 H 0.126 0.874 37 H 0.085 0.915 38 H 0.149 0.851 39 H 0.151 0.849 40 H 0.064 0.936 41 H 0.080 0.920 42 H 0.098 0.902 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -9.764 5.303 -12.567 16.774 hybrid contribution 0.626 -0.882 1.443 1.803 sum -9.138 4.422 -11.124 15.059 Atomic orbital electron populations 1.21890 0.94729 1.02251 1.01643 1.21101 0.96106 0.95871 0.97400 1.21912 1.01088 0.96128 1.01674 1.21197 0.94245 0.96083 0.98278 1.21581 0.95980 1.00092 0.96340 1.21435 0.99480 0.94010 0.99417 1.21282 0.98230 0.96184 0.95561 1.21220 0.82954 0.80768 0.90967 1.90485 1.60127 1.65070 1.35051 1.43886 1.18701 1.42632 1.12397 1.19682 0.96209 1.30017 1.00888 0.90202 1.25873 0.94151 1.00057 0.99650 1.69949 1.02072 1.39634 1.41889 0.84989 0.76859 0.78757 0.78161 1.18247 1.21161 1.20384 1.19175 0.91688 0.91806 0.88378 1.29679 0.92255 0.93205 0.90570 1.80855 1.12040 1.14836 1.10789 1.21312 0.91979 1.00901 0.99044 1.21626 1.01063 0.94602 0.96848 0.93347 0.92090 0.91835 0.90361 0.92769 0.91943 0.93374 0.92599 0.90430 0.91463 0.94181 0.93738 0.87399 0.91496 0.85138 0.84936 0.93640 0.91986 0.90172 0.90178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.16 8.84 71.98 0.64 -1.52 16 2 C -0.09 -1.42 2.51 -10.79 -0.03 -1.45 16 3 C -0.15 -2.48 8.84 71.98 0.64 -1.84 16 4 C -0.08 -1.68 1.78 -10.79 -0.02 -1.70 16 5 C -0.10 -2.50 4.85 30.59 0.15 -2.35 16 6 C -0.10 -3.51 5.16 30.59 0.16 -3.36 16 7 C -0.09 -3.08 1.91 -11.54 -0.02 -3.10 16 8 C 0.45 20.83 6.58 87.66 0.58 21.41 16 9 O -0.62 -34.25 15.88 -3.06 -0.05 -34.30 16 10 N -0.46 -21.64 2.61 -645.42 -1.68 -23.33 16 11 C -0.34 -18.09 9.37 84.04 0.79 -17.30 16 12 H 0.08 4.61 7.37 -2.91 -0.02 4.59 16 13 C 0.00 0.20 4.96 84.93 0.42 0.63 16 14 N -0.90 -44.78 9.29 21.66 0.20 -44.57 16 15 Si 0.99 40.53 29.59 68.60 2.03 42.56 16 16 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 17 H -0.29 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 19 C 0.22 8.43 4.92 84.57 0.42 8.85 16 20 C 0.26 11.30 11.78 89.45 1.05 12.36 16 21 N -0.50 -23.58 18.15 19.99 0.36 -23.22 16 22 C -0.09 -2.79 4.83 30.59 0.15 -2.64 16 23 C -0.10 -2.17 4.85 30.59 0.15 -2.02 16 24 H 0.05 0.75 8.14 -2.39 -0.02 0.73 16 25 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.06 0.87 6.43 -2.39 -0.02 0.85 16 27 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.05 0.94 6.43 -2.39 -0.02 0.92 16 29 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.06 1.34 8.14 -2.39 -0.02 1.33 16 32 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.07 1.60 6.43 -2.39 -0.02 1.58 16 34 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 35 H 0.04 1.68 5.54 -2.39 -0.01 1.67 16 36 H 0.11 2.98 5.90 -2.39 -0.01 2.97 16 37 H 0.27 13.19 8.31 -92.71 -0.77 12.42 16 38 H 0.13 5.28 6.14 -2.39 -0.01 5.26 16 39 H 0.13 3.76 5.96 -2.39 -0.01 3.74 16 40 H 0.04 1.57 7.86 -2.39 -0.02 1.55 16 41 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 42 H 0.08 1.45 6.43 -2.38 -0.02 1.43 16 43 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 Total: -1.00 -66.08 332.21 6.93 -59.15 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: 1.00 Total: 17.74 kcal Atomic # 6 Polarization: 0.90 SS G_CDS: 5.06 Total: 5.96 kcal Atomic # 7 Polarization: -90.00 SS G_CDS: -1.12 Total: -91.12 kcal Atomic # 8 Polarization: -34.25 SS G_CDS: -0.05 Total: -34.30 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -66.08 6.93 -59.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338040870.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.263 kcal (2) G-P(sol) polarization free energy of solvation -66.079 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds