Wall clock time and date at job start Tue Mar 31 2020 00:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46801 * 2 1 4 4 C 1.53003 * 109.46933 * 240.00103 * 2 1 3 5 5 C 1.50701 * 109.47007 * 59.99759 * 4 2 1 6 6 H 1.08003 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99870 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00289 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00040 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46961 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47197 * 120.00244 * 9 7 5 12 12 H 1.48498 * 109.47318 * 240.00371 * 9 7 5 13 13 C 1.52995 * 109.47292 * 120.00220 * 2 1 3 14 14 N 1.46507 * 109.47142 * 300.00062 * 13 2 1 15 15 C 1.39700 * 120.00003 * 180.02562 * 14 13 2 16 16 C 1.39315 * 120.49290 * 180.02562 * 15 14 13 17 17 C 1.38494 * 118.35984 * 179.97438 * 16 15 14 18 18 C 1.38279 * 119.24004 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.53510 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47466 * 124.99880 * 19 18 17 21 21 O 1.42898 * 109.47319 * 180.02562 * 20 19 18 22 22 N 1.31847 * 120.92945 * 0.25808 * 18 17 16 23 23 C 1.31823 * 121.79973 * 359.47221 * 22 18 17 24 24 H 1.08998 * 109.46869 * 299.99757 * 1 2 3 25 25 H 1.08995 * 109.47373 * 59.99863 * 1 2 3 26 26 H 1.09003 * 109.46710 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46786 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47269 * 300.00200 * 3 2 1 29 29 H 1.08998 * 109.47211 * 60.00452 * 3 2 1 30 30 H 1.09000 * 109.46698 * 179.97438 * 4 2 1 31 31 H 1.08992 * 109.47128 * 299.99950 * 4 2 1 32 32 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47320 * 180.02562 * 13 2 1 34 34 H 1.09000 * 109.47499 * 59.99775 * 13 2 1 35 35 H 0.96995 * 119.99671 * 359.97438 * 14 13 2 36 36 H 1.07999 * 120.81991 * 359.94459 * 16 15 14 37 37 H 1.08000 * 120.38189 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47120 * 4.99633 * 19 18 17 39 39 H 1.08998 * 109.46862 * 245.00435 * 19 18 17 40 40 H 1.09002 * 109.47153 * 59.99773 * 20 19 18 41 41 H 1.09001 * 109.46832 * 299.99964 * 20 19 18 42 42 H 0.96701 * 113.99881 * 180.02562 * 21 20 19 43 43 H 1.08003 * 119.67020 * 180.29060 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 0.4243 1.5664 -4.8529 11 1 2.4042 0.8663 -6.0651 12 1 0.4241 -0.5336 -6.0660 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8897 -0.5077 3.7142 16 6 1.4306 0.1406 4.8586 17 6 1.7920 -0.3704 6.0940 18 6 2.5897 -1.4985 6.1512 19 6 2.9875 -2.0599 7.4919 20 6 2.5822 -3.5333 7.5685 21 8 2.9588 -4.0654 8.8401 22 7 3.0118 -2.0866 5.0492 23 6 2.6872 -1.6363 3.8535 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 2.8615 -1.8822 -4.7337 33 1 3.1301 -0.7209 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9944 0.7581 2.3564 36 1 0.8086 1.0204 4.7843 37 1 1.4541 0.1061 7.0024 38 1 2.4846 -1.5032 8.2826 39 1 4.0668 -1.9730 7.6164 40 1 3.0851 -4.0900 6.7778 41 1 1.5028 -3.6200 7.4440 42 1 2.7323 -4.9980 8.9589 43 1 3.0484 -2.1477 2.9735 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000342277781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:50 Heat of formation + Delta-G solvation = -39.822446 kcal Electronic energy + Delta-G solvation = -21099.390879 eV Core-core repulsion = 17950.452890 eV Total energy + Delta-G solvation = -3148.937989 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29528 -37.94902 -37.04186 -34.92768 -32.61048 -32.30749 -31.54364 -28.16857 -26.98132 -26.57394 -25.97389 -24.05237 -23.33166 -22.03797 -21.25597 -18.41012 -17.73003 -17.05618 -16.51101 -16.18021 -15.66342 -15.27857 -14.68826 -14.60068 -14.36459 -14.20748 -13.85799 -13.45620 -13.02834 -12.97293 -12.79002 -12.55780 -12.13034 -12.05411 -11.75246 -11.47749 -11.28992 -11.08433 -10.88306 -10.72453 -10.48557 -10.38109 -10.29467 -10.10845 -9.89482 -9.44120 -9.38228 -9.27838 -8.98673 -8.41865 -7.35376 -6.05912 -4.07159 1.29252 1.47321 3.26243 3.34642 3.36710 3.53982 3.82625 4.09936 4.40504 4.51311 4.85556 4.92218 4.99995 5.11198 5.21093 5.29860 5.31294 5.39933 5.50507 5.57816 5.61134 5.73581 5.80740 5.88149 6.04916 6.08824 6.11508 6.17335 6.22722 6.29528 6.56368 6.56675 6.67160 6.96187 7.00205 7.03113 7.34044 7.41994 7.55972 7.68030 7.75068 7.92505 8.17146 8.34503 8.97633 9.56482 11.05575 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038432 B = 0.002849 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.385160 B = 9825.934449 C =10283.281342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.070 4.070 3 C -0.127 4.127 4 C 0.035 3.965 5 C -0.511 4.511 6 H 0.060 0.940 7 C 0.056 3.944 8 N -0.894 5.894 9 Si 0.889 3.111 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 C 0.127 3.873 14 N -0.728 5.728 15 C 0.178 3.822 16 C -0.165 4.165 17 C -0.113 4.113 18 C 0.048 3.952 19 C -0.054 4.054 20 C 0.083 3.917 21 O -0.580 6.580 22 N -0.440 5.440 23 C 0.027 3.973 24 H 0.029 0.971 25 H 0.066 0.934 26 H 0.047 0.953 27 H 0.047 0.953 28 H 0.066 0.934 29 H 0.029 0.971 30 H 0.018 0.982 31 H 0.018 0.982 32 H 0.260 0.740 33 H 0.059 0.941 34 H 0.059 0.941 35 H 0.400 0.600 36 H 0.129 0.871 37 H 0.129 0.871 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.042 0.958 42 H 0.379 0.621 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.586 0.713 19.512 19.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.070 4.070 3 C -0.184 4.184 4 C -0.002 4.002 5 C -0.549 4.549 6 H 0.078 0.922 7 C -0.145 4.145 8 N -0.534 5.534 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.211 1.211 13 C 0.004 3.996 14 N -0.356 5.356 15 C 0.069 3.931 16 C -0.196 4.196 17 C -0.133 4.133 18 C -0.092 4.092 19 C -0.092 4.092 20 C 0.005 3.995 21 O -0.385 6.385 22 N -0.148 5.148 23 C -0.137 4.137 24 H 0.048 0.952 25 H 0.085 0.915 26 H 0.066 0.934 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.048 0.952 30 H 0.037 0.963 31 H 0.037 0.963 32 H 0.070 0.930 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.236 0.764 36 H 0.147 0.853 37 H 0.147 0.853 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.076 0.924 41 H 0.060 0.940 42 H 0.226 0.774 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -1.686 0.378 19.336 19.413 hybrid contribution -1.278 0.945 -1.314 2.062 sum -2.964 1.323 18.022 18.311 Atomic orbital electron populations 1.21752 0.95254 1.01132 1.00250 1.20858 0.95482 0.95852 0.94824 1.21753 1.00500 0.95905 1.00253 1.19106 0.96332 0.95214 0.89560 1.21206 1.31166 1.12074 0.90494 0.92236 1.25012 0.95280 0.95080 0.99123 1.69965 1.36967 1.23049 1.23405 0.86592 0.78633 0.79690 0.83410 1.19814 1.21093 1.21091 1.21704 0.98381 0.95927 0.83610 1.45041 1.55986 1.32464 1.02060 1.18997 0.93823 0.93797 0.86493 1.20996 1.04962 1.02391 0.91212 1.21625 0.97612 0.96392 0.97706 1.20559 0.99798 0.95350 0.93468 1.20149 1.02471 0.94423 0.92146 1.22113 0.98205 0.94429 0.84790 1.86420 1.85318 1.30478 1.36333 1.67219 1.19452 1.30277 0.97898 1.22314 1.00399 0.95651 0.95323 0.95244 0.91461 0.93394 0.93378 0.91459 0.95237 0.96337 0.96342 0.93049 0.92234 0.92243 0.76368 0.85294 0.85309 0.90332 0.90111 0.92407 0.93985 0.77431 0.82816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 8.05 37.16 0.30 -1.86 16 2 C -0.07 -1.25 0.54 -154.50 -0.08 -1.34 16 3 C -0.13 -2.16 8.05 37.16 0.30 -1.87 16 4 C 0.04 0.83 4.04 -27.88 -0.11 0.72 16 5 C -0.51 -13.25 7.65 -34.44 -0.26 -13.52 16 6 H 0.06 1.50 5.68 -52.48 -0.30 1.20 16 7 C 0.06 1.53 5.46 -17.82 -0.10 1.44 16 8 N -0.89 -25.88 13.29 55.43 0.74 -25.14 16 9 Si 0.89 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 C 0.13 1.98 3.82 -4.04 -0.02 1.97 16 14 N -0.73 -9.74 5.14 -58.52 -0.30 -10.04 16 15 C 0.18 2.37 6.68 -83.63 -0.56 1.81 16 16 C -0.16 -1.91 10.05 -39.09 -0.39 -2.30 16 17 C -0.11 -1.24 9.70 -39.47 -0.38 -1.62 16 18 C 0.05 0.59 6.18 -82.57 -0.51 0.08 16 19 C -0.05 -0.57 5.98 -27.89 -0.17 -0.73 16 20 C 0.08 0.84 6.91 37.16 0.26 1.09 16 21 O -0.58 -5.62 13.66 -35.23 -0.48 -6.10 16 22 N -0.44 -6.27 9.87 -9.30 -0.09 -6.36 16 23 C 0.03 0.39 10.49 -17.31 -0.18 0.21 16 24 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 25 H 0.07 1.25 6.62 -51.93 -0.34 0.90 16 26 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.07 1.25 6.62 -51.93 -0.34 0.91 16 29 H 0.03 0.42 6.86 -51.93 -0.36 0.06 16 30 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 33 H 0.06 0.95 7.97 -51.93 -0.41 0.54 16 34 H 0.06 0.94 7.97 -51.93 -0.41 0.53 16 35 H 0.40 4.95 6.19 -40.82 -0.25 4.70 16 36 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 37 H 0.13 1.06 7.94 -52.49 -0.42 0.65 16 38 H 0.08 0.71 7.86 -51.93 -0.41 0.30 16 39 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.06 0.63 7.95 -51.93 -0.41 0.22 16 41 H 0.04 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.38 1.95 9.12 45.56 0.42 2.36 16 43 H 0.15 2.14 6.76 -52.48 -0.35 1.78 16 LS Contribution 346.01 15.07 5.21 5.21 Total: -1.00 -29.87 346.01 -7.90 -37.77 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: -6.05 Total: 4.70 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.91 Total: -15.92 kcal Atomic # 7 Polarization: -41.88 SS G_CDS: 0.34 Total: -41.54 kcal Atomic # 8 Polarization: -5.62 SS G_CDS: -0.48 Total: -6.10 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.87 -7.90 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342277781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.049 kcal (2) G-P(sol) polarization free energy of solvation -29.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.903 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds