Wall clock time and date at job start Tue Mar 31 2020 00:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53001 * 109.46801 * 2 1 4 4 C 1.53003 * 109.46933 * 240.00103 * 2 1 3 5 5 C 1.50701 * 109.47007 * 59.99759 * 4 2 1 6 6 H 1.08003 * 120.00266 * 0.02562 * 5 4 2 7 7 C 1.37874 * 119.99870 * 179.97438 * 5 4 2 8 8 N 1.31518 * 120.00289 * 0.02562 * 7 5 4 9 9 Si 1.86803 * 120.00040 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46961 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.47197 * 120.00244 * 9 7 5 12 12 H 1.48498 * 109.47318 * 240.00371 * 9 7 5 13 13 C 1.52995 * 109.47292 * 120.00220 * 2 1 3 14 14 N 1.46507 * 109.47142 * 300.00062 * 13 2 1 15 15 C 1.39700 * 120.00003 * 180.02562 * 14 13 2 16 16 C 1.39315 * 120.49290 * 180.02562 * 15 14 13 17 17 C 1.38494 * 118.35984 * 179.97438 * 16 15 14 18 18 C 1.38279 * 119.24004 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.53510 * 179.97438 * 18 17 16 20 20 C 1.52997 * 109.47466 * 124.99880 * 19 18 17 21 21 O 1.42898 * 109.47319 * 180.02562 * 20 19 18 22 22 N 1.31847 * 120.92945 * 0.25808 * 18 17 16 23 23 C 1.31823 * 121.79973 * 359.47221 * 22 18 17 24 24 H 1.08998 * 109.46869 * 299.99757 * 1 2 3 25 25 H 1.08995 * 109.47373 * 59.99863 * 1 2 3 26 26 H 1.09003 * 109.46710 * 179.97438 * 1 2 3 27 27 H 1.09005 * 109.46786 * 180.02562 * 3 2 1 28 28 H 1.08995 * 109.47269 * 300.00200 * 3 2 1 29 29 H 1.08998 * 109.47211 * 60.00452 * 3 2 1 30 30 H 1.09000 * 109.46698 * 179.97438 * 4 2 1 31 31 H 1.08992 * 109.47128 * 299.99950 * 4 2 1 32 32 H 0.96996 * 120.00180 * 179.97438 * 8 7 5 33 33 H 1.09000 * 109.47320 * 180.02562 * 13 2 1 34 34 H 1.09000 * 109.47499 * 59.99775 * 13 2 1 35 35 H 0.96995 * 119.99671 * 359.97438 * 14 13 2 36 36 H 1.07999 * 120.81991 * 359.94459 * 16 15 14 37 37 H 1.08000 * 120.38189 * 180.02562 * 17 16 15 38 38 H 1.09002 * 109.47120 * 4.99633 * 19 18 17 39 39 H 1.08998 * 109.46862 * 245.00435 * 19 18 17 40 40 H 1.09002 * 109.47153 * 59.99773 * 20 19 18 41 41 H 1.09001 * 109.46832 * 299.99964 * 20 19 18 42 42 H 0.96701 * 113.99881 * 180.02562 * 21 20 19 43 43 H 1.08003 * 119.67020 * 180.29060 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 1.5376 -0.0108 -2.4797 6 1 0.9170 0.8675 -2.3806 7 6 1.8711 -0.4815 -3.7320 8 7 2.6272 -1.5508 -3.8527 9 14 1.2489 0.3994 -5.2572 10 1 0.4243 1.5664 -4.8529 11 1 2.4042 0.8663 -6.0651 12 1 0.4241 -0.5336 -6.0660 13 6 2.0401 -0.7213 1.2492 14 7 1.5518 -0.0307 2.4454 15 6 1.8897 -0.5077 3.7142 16 6 1.4306 0.1406 4.8586 17 6 1.7920 -0.3704 6.0940 18 6 2.5897 -1.4985 6.1512 19 6 2.9875 -2.0599 7.4919 20 6 2.5822 -3.5333 7.5685 21 8 2.9588 -4.0654 8.8401 22 7 3.0118 -2.0866 5.0492 23 6 2.6872 -1.6363 3.8535 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 2.8615 -1.8822 -4.7337 33 1 3.1301 -0.7209 1.2494 34 1 1.6768 -1.7489 1.2492 35 1 0.9944 0.7581 2.3564 36 1 0.8086 1.0204 4.7843 37 1 1.4541 0.1061 7.0024 38 1 2.4846 -1.5032 8.2826 39 1 4.0668 -1.9730 7.6164 40 1 3.0851 -4.0900 6.7778 41 1 1.5028 -3.6200 7.4440 42 1 2.7323 -4.9980 8.9589 43 1 3.0484 -2.1477 2.9735 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000342277781.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:49 Heat of formation + Delta-G solvation = -59.866774 kcal Electronic energy + Delta-G solvation = -21100.260066 eV Core-core repulsion = 17950.452890 eV Total energy + Delta-G solvation = -3149.807176 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.27465 -39.27743 -37.85807 -36.17408 -34.42531 -33.25908 -32.63121 -29.48259 -28.55712 -27.97488 -27.24962 -25.10729 -24.83667 -23.22823 -22.17362 -19.83509 -18.52177 -18.37618 -18.16150 -17.34110 -16.61607 -16.48713 -16.13566 -15.86302 -15.50938 -15.21650 -15.00561 -14.53322 -14.41936 -14.35727 -13.94748 -13.93176 -13.73266 -13.03116 -12.87322 -12.76365 -12.66088 -12.62574 -12.35299 -12.23136 -12.20766 -11.94941 -11.66335 -11.27817 -10.99709 -10.87949 -10.84984 -10.52565 -10.38315 -10.33266 -8.39761 -8.15370 -6.22284 0.35064 0.51904 1.39942 1.41739 1.52649 2.38930 2.48613 2.90475 3.19497 3.31902 3.61237 3.93471 4.00788 4.05059 4.09418 4.16706 4.24810 4.30633 4.37990 4.50210 4.66947 4.71717 4.73802 4.77794 4.78955 4.95955 4.98741 5.09029 5.11135 5.12488 5.19812 5.33905 5.42545 5.49374 5.51671 5.54981 5.72479 5.80263 5.89658 6.20183 6.33627 6.76781 6.88683 6.93106 7.20247 7.45401 8.97097 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038432 B = 0.002849 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 728.385160 B = 9825.934449 C =10283.281342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.062 4.062 3 C -0.121 4.121 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.069 0.931 7 C -0.004 4.004 8 N -0.937 5.937 9 Si 0.955 3.045 10 H -0.259 1.259 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.143 3.857 14 N -0.722 5.722 15 C 0.167 3.833 16 C -0.156 4.156 17 C -0.108 4.108 18 C 0.042 3.958 19 C -0.054 4.054 20 C 0.087 3.913 21 O -0.592 6.592 22 N -0.465 5.465 23 C 0.003 3.997 24 H 0.065 0.935 25 H 0.051 0.949 26 H 0.038 0.962 27 H 0.037 0.963 28 H 0.051 0.949 29 H 0.065 0.935 30 H -0.011 1.011 31 H -0.011 1.011 32 H 0.259 0.741 33 H 0.050 0.950 34 H 0.050 0.950 35 H 0.408 0.592 36 H 0.158 0.842 37 H 0.164 0.836 38 H 0.099 0.901 39 H 0.073 0.927 40 H 0.043 0.957 41 H 0.048 0.952 42 H 0.397 0.603 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.208 2.712 21.530 22.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.063 4.063 3 C -0.178 4.178 4 C 0.002 3.998 5 C -0.551 4.551 6 H 0.087 0.913 7 C -0.201 4.201 8 N -0.578 5.578 9 Si 0.781 3.219 10 H -0.183 1.183 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.018 3.982 14 N -0.352 5.352 15 C 0.059 3.941 16 C -0.187 4.187 17 C -0.128 4.128 18 C -0.098 4.098 19 C -0.092 4.092 20 C 0.009 3.991 21 O -0.400 6.400 22 N -0.174 5.174 23 C -0.159 4.159 24 H 0.084 0.916 25 H 0.070 0.930 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.084 0.916 30 H 0.007 0.993 31 H 0.008 0.992 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.069 0.931 35 H 0.246 0.754 36 H 0.175 0.825 37 H 0.182 0.818 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.247 0.753 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -3.322 2.379 21.373 21.760 hybrid contribution -0.746 0.267 -1.795 1.962 sum -4.068 2.646 19.578 20.171 Atomic orbital electron populations 1.21674 0.94024 1.00876 1.01207 1.20651 0.96343 0.96087 0.93209 1.21677 0.99896 0.95039 1.01211 1.18984 0.94417 0.94279 0.92160 1.21618 1.30246 1.11954 0.91243 0.91314 1.25901 0.95726 0.95889 1.02577 1.70107 1.38791 1.24907 1.24010 0.85543 0.78065 0.78829 0.79494 1.18308 1.21057 1.21018 1.21291 0.97709 0.95409 0.83748 1.44707 1.56513 1.32669 1.01296 1.19049 0.94265 0.93909 0.86877 1.21351 1.04190 1.02645 0.90493 1.22010 0.96370 0.95523 0.98922 1.20991 0.99580 0.95779 0.93497 1.20202 1.02259 0.94913 0.91791 1.21995 0.98316 0.94175 0.84617 1.86372 1.85512 1.32285 1.35863 1.67189 1.20440 1.31294 0.98431 1.22258 1.01715 0.96685 0.95278 0.91622 0.93040 0.94300 0.94343 0.93028 0.91624 0.99269 0.99221 0.93169 0.93219 0.93129 0.75404 0.82479 0.81827 0.88229 0.90842 0.93879 0.93372 0.75272 0.84016 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.95 8.05 71.98 0.58 -3.37 16 2 C -0.06 -2.24 0.54 -52.18 -0.03 -2.27 16 3 C -0.12 -3.98 8.05 71.98 0.58 -3.40 16 4 C 0.04 1.92 4.04 29.85 0.12 2.04 16 5 C -0.51 -26.99 7.65 25.60 0.20 -26.80 16 6 H 0.07 3.44 5.68 -2.91 -0.02 3.42 16 7 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 8 N -0.94 -55.99 13.29 21.45 0.28 -55.71 16 9 Si 0.95 43.22 29.54 68.60 2.03 45.24 16 10 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 11 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 12 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 13 C 0.14 4.48 3.82 86.38 0.33 4.81 16 14 N -0.72 -18.01 5.14 -339.05 -1.74 -19.76 16 15 C 0.17 4.17 6.68 38.30 0.26 4.42 16 16 C -0.16 -3.08 10.05 22.59 0.23 -2.86 16 17 C -0.11 -2.00 9.70 22.34 0.22 -1.79 16 18 C 0.04 0.96 6.18 42.57 0.26 1.23 16 19 C -0.05 -1.03 5.98 29.85 0.18 -0.85 16 20 C 0.09 1.66 6.91 71.98 0.50 2.15 16 21 O -0.59 -10.51 13.66 -148.98 -2.04 -12.54 16 22 N -0.46 -13.14 9.87 -183.34 -1.81 -14.95 16 23 C 0.00 0.10 10.49 84.85 0.89 0.99 16 24 H 0.06 1.67 6.86 -2.39 -0.02 1.65 16 25 H 0.05 1.84 6.62 -2.39 -0.02 1.83 16 26 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 27 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 28 H 0.05 1.85 6.62 -2.39 -0.02 1.84 16 29 H 0.06 1.68 6.86 -2.39 -0.02 1.66 16 30 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 31 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 32 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 33 H 0.05 1.64 7.97 -2.39 -0.02 1.63 16 34 H 0.05 1.67 7.97 -2.39 -0.02 1.65 16 35 H 0.41 8.72 6.19 -92.71 -0.57 8.14 16 36 H 0.16 2.20 8.06 -2.91 -0.02 2.17 16 37 H 0.16 1.87 7.94 -2.91 -0.02 1.85 16 38 H 0.10 1.48 7.86 -2.39 -0.02 1.46 16 39 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 40 H 0.04 0.93 7.95 -2.39 -0.02 0.91 16 41 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.40 3.48 9.12 -74.06 -0.68 2.80 16 43 H 0.14 4.20 6.76 -2.91 -0.02 4.18 16 Total: -1.00 -66.01 346.01 1.25 -64.76 By element: Atomic # 1 Polarization: 18.65 SS G_CDS: -0.24 Total: 18.41 kcal Atomic # 6 Polarization: -30.22 SS G_CDS: 4.77 Total: -25.45 kcal Atomic # 7 Polarization: -87.14 SS G_CDS: -3.27 Total: -90.41 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: -2.04 Total: -12.54 kcal Atomic # 14 Polarization: 43.22 SS G_CDS: 2.03 Total: 45.24 kcal Total: -66.01 1.25 -64.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000342277781.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.889 kcal (2) G-P(sol) polarization free energy of solvation -66.007 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.756 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds