Wall clock time and date at job start Tue Mar 31 2020 00:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34482 * 126.83360 * 2 1 4 4 N 1.36447 * 108.85570 * 180.19875 * 3 2 1 5 5 H 0.97003 * 124.85163 * 179.82251 * 4 3 2 6 6 C 1.34658 * 110.29677 * 359.55329 * 4 3 2 7 7 C 1.36768 * 108.40022 * 0.26790 * 6 4 3 8 8 C 1.47256 * 126.94422 * 180.02562 * 7 6 4 9 9 O 1.21634 * 119.99794 * 159.54019 * 8 7 6 10 10 N 1.34771 * 120.00201 * 339.53708 * 8 7 6 11 11 C 1.46498 * 120.00226 * 5.83212 * 10 8 7 12 12 C 1.50694 * 109.47613 * 88.64581 * 11 10 8 13 13 H 1.07995 * 120.00017 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00333 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99615 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00082 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47297 * 90.00045 * 16 14 12 18 18 H 1.48508 * 109.46967 * 209.99934 * 16 14 12 19 19 H 1.48498 * 109.47309 * 329.99827 * 16 14 12 20 20 C 1.46507 * 120.00153 * 185.82305 * 10 8 7 21 21 C 1.52998 * 109.47037 * 93.73519 * 20 10 8 22 22 C 1.53000 * 109.47054 * 57.78354 * 21 20 10 23 23 C 1.52996 * 109.47317 * 177.78502 * 21 20 10 24 24 C 1.53004 * 109.46882 * 297.78525 * 21 20 10 25 25 H 1.09004 * 109.46918 * 270.27035 * 1 2 3 26 26 H 1.08996 * 109.47237 * 30.27265 * 1 2 3 27 27 H 1.08995 * 109.47384 * 150.27155 * 1 2 3 28 28 H 1.07997 * 125.57721 * 0.04085 * 3 2 1 29 29 H 1.08007 * 125.80010 * 180.24543 * 6 4 3 30 30 H 1.09001 * 109.47617 * 208.65302 * 11 10 8 31 31 H 1.09005 * 109.46721 * 328.64666 * 11 10 8 32 32 H 0.96998 * 119.99598 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47031 * 213.73519 * 20 10 8 34 34 H 1.09000 * 109.47032 * 333.73595 * 20 10 8 35 35 H 1.08998 * 109.47445 * 59.99959 * 22 21 20 36 36 H 1.09006 * 109.46856 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.47404 * 299.99940 * 22 21 20 38 38 H 1.08996 * 109.47035 * 59.99685 * 23 21 20 39 39 H 1.08995 * 109.47545 * 180.02562 * 23 21 20 40 40 H 1.09002 * 109.47055 * 300.00417 * 23 21 20 41 41 H 1.08993 * 109.47111 * 65.66477 * 24 21 20 42 42 H 1.09000 * 109.46867 * 185.66369 * 24 21 20 43 43 H 1.08994 * 109.47155 * 305.66015 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6552 -0.0045 5 1 4.3840 1.2413 -0.0079 6 6 3.6656 -0.6902 0.0024 7 6 2.3864 -1.1741 0.0056 8 6 1.9749 -2.5880 0.0136 9 8 0.8575 -2.8941 0.3839 10 7 2.8365 -3.5428 -0.3894 11 6 4.2211 -3.1907 -0.7135 12 6 5.0644 -3.2694 0.5328 13 1 4.6142 -3.5538 1.4724 14 6 6.4109 -2.9784 0.4738 15 7 6.9590 -2.6317 -0.6704 16 14 7.4563 -3.0767 2.0186 17 1 8.0119 -4.4473 2.1540 18 1 8.5696 -2.0982 1.9260 19 1 6.6187 -2.7628 3.2039 20 6 2.3884 -4.9331 -0.5033 21 6 1.9382 -5.2078 -1.9395 22 6 3.0926 -4.9162 -2.9004 23 6 1.5224 -6.6742 -2.0720 24 6 0.7495 -4.3076 -2.2824 25 1 -0.3633 0.0048 1.0277 26 1 -0.3633 0.8875 -0.5180 27 1 -0.3634 -0.8924 -0.5096 28 1 1.9869 2.1058 0.0006 29 1 4.5664 -1.2860 0.0047 30 1 4.6080 -3.8859 -1.4586 31 1 4.2544 -2.1764 -1.1113 32 1 7.9062 -2.4266 -0.7119 33 1 3.2098 -5.6018 -0.2457 34 1 1.5544 -5.1029 0.1777 35 1 3.9395 -5.5574 -2.6561 36 1 2.7717 -5.1115 -3.9237 37 1 3.3889 -3.8715 -2.8061 38 1 0.7001 -6.8819 -1.3874 39 1 1.2021 -6.8701 -3.0953 40 1 2.3693 -7.3155 -1.8276 41 1 1.0715 -3.2663 -2.2862 42 1 0.3653 -4.5727 -3.2674 43 1 -0.0351 -4.4426 -1.5379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344528668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:16 Heat of formation + Delta-G solvation = 5.626947 kcal Electronic energy + Delta-G solvation = -23250.172197 eV Core-core repulsion = 20103.205042 eV Total energy + Delta-G solvation = -3146.967155 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.57461 -38.82372 -36.37356 -34.44048 -32.37827 -31.82040 -29.39778 -27.70019 -26.85455 -26.63398 -25.90108 -25.44126 -23.05933 -21.16559 -19.52565 -18.29156 -17.91482 -17.01882 -16.57944 -15.51515 -15.06801 -14.75065 -14.34775 -13.94110 -13.77430 -13.32129 -13.13280 -12.92869 -12.67912 -12.43280 -12.26378 -12.18661 -11.94210 -11.78241 -11.72717 -11.18642 -11.17000 -11.06360 -10.90468 -10.81114 -10.63290 -10.38759 -10.20334 -10.12900 -9.86713 -9.67381 -8.86531 -8.60973 -7.94179 -7.53134 -7.45944 -6.27344 -4.35308 2.73386 3.00003 3.16298 3.24286 3.29557 3.89728 4.17280 4.26478 4.50385 5.02563 5.30469 5.30633 5.42517 5.52108 5.74909 5.83732 5.94408 5.97521 6.01399 6.12616 6.16437 6.21873 6.26862 6.27928 6.34569 6.43103 6.48197 6.58940 6.60036 6.67187 6.77325 6.79156 6.85461 6.91025 6.96276 7.24214 7.48297 7.64648 7.65754 7.79714 8.01809 8.15520 8.53490 8.81023 9.28156 9.40731 10.75661 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.009165 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.399705 B = 3054.482492 C = 4842.818816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.122 4.122 3 C -0.050 4.050 4 N -0.561 5.561 5 H 0.411 0.589 6 C 0.059 3.941 7 C -0.237 4.237 8 C 0.592 3.408 9 O -0.577 6.577 10 N -0.593 5.593 11 C 0.211 3.789 12 C -0.536 4.536 13 H 0.064 0.936 14 C 0.063 3.937 15 N -0.890 5.890 16 Si 0.892 3.108 17 H -0.278 1.278 18 H -0.285 1.285 19 H -0.272 1.272 20 C 0.131 3.869 21 C -0.085 4.085 22 C -0.141 4.141 23 C -0.135 4.135 24 C -0.129 4.129 25 H 0.058 0.942 26 H 0.048 0.952 27 H 0.067 0.933 28 H 0.156 0.844 29 H 0.229 0.771 30 H 0.046 0.954 31 H 0.052 0.948 32 H 0.267 0.733 33 H 0.071 0.929 34 H 0.073 0.927 35 H 0.054 0.946 36 H 0.042 0.958 37 H 0.067 0.933 38 H 0.052 0.948 39 H 0.051 0.949 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.040 0.960 43 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 2.248 -2.940 6.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 C -0.176 4.176 4 N -0.155 5.155 5 H 0.247 0.753 6 C -0.076 4.076 7 C -0.246 4.246 8 C 0.384 3.616 9 O -0.460 6.460 10 N -0.322 5.322 11 C 0.091 3.909 12 C -0.574 4.574 13 H 0.082 0.918 14 C -0.140 4.140 15 N -0.528 5.528 16 Si 0.720 3.280 17 H -0.204 1.204 18 H -0.211 1.211 19 H -0.196 1.196 20 C 0.008 3.992 21 C -0.086 4.086 22 C -0.198 4.198 23 C -0.193 4.193 24 C -0.187 4.187 25 H 0.076 0.924 26 H 0.067 0.933 27 H 0.086 0.914 28 H 0.174 0.826 29 H 0.244 0.756 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.092 0.908 35 H 0.073 0.927 36 H 0.061 0.939 37 H 0.086 0.914 38 H 0.071 0.929 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.072 0.928 42 H 0.060 0.940 43 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.145 2.237 -2.845 7.131 hybrid contribution 1.283 0.261 0.813 1.541 sum -4.862 2.497 -2.032 5.831 Atomic orbital electron populations 1.20025 0.90248 1.01280 1.01254 1.20446 0.94932 0.91032 1.06497 1.21360 0.83349 0.98414 1.14514 1.41742 1.07510 1.07563 1.58716 0.75340 1.24427 1.01959 0.82584 0.98656 1.20309 0.92587 0.92726 1.19024 1.17326 0.83809 0.84338 0.76162 1.90618 1.21721 1.83271 1.50374 1.47867 1.12602 1.06384 1.65346 1.20103 0.75957 0.98282 0.96517 1.21651 0.93329 1.46699 0.95768 0.91808 1.24982 0.97636 0.94991 0.96410 1.69942 1.12798 1.45652 1.24388 0.86563 0.79901 0.78217 0.83360 1.20357 1.21071 1.19640 1.21300 0.99732 0.83517 0.94688 1.20955 0.95974 0.95012 0.96648 1.22004 0.97399 1.02963 0.97430 1.21783 1.00961 0.95492 1.01092 1.21765 0.97373 0.99627 0.99896 0.92369 0.93258 0.91372 0.82642 0.75569 0.93634 0.93021 0.92374 0.91030 0.90836 0.92662 0.93930 0.91362 0.92891 0.93034 0.92768 0.92839 0.94048 0.92421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.16 9.91 36.01 0.36 -0.81 16 2 C -0.12 -2.28 6.35 -102.54 -0.65 -2.93 16 3 C -0.05 -0.79 11.82 -16.83 -0.20 -0.99 16 4 N -0.56 -9.21 5.90 -12.85 -0.08 -9.29 16 5 H 0.41 5.34 8.96 -40.82 -0.37 4.98 16 6 C 0.06 1.19 9.51 -16.84 -0.16 1.03 16 7 C -0.24 -5.10 6.01 -103.35 -0.62 -5.72 16 8 C 0.59 13.43 6.15 -12.60 -0.08 13.36 16 9 O -0.58 -13.79 14.42 5.25 0.08 -13.71 16 10 N -0.59 -12.78 2.00 -176.39 -0.35 -13.13 16 11 C 0.21 4.85 3.46 -5.20 -0.02 4.83 16 12 C -0.54 -13.29 7.58 -34.44 -0.26 -13.55 16 13 H 0.06 1.67 7.81 -52.49 -0.41 1.26 16 14 C 0.06 1.56 5.07 -17.82 -0.09 1.47 16 15 N -0.89 -22.64 13.29 55.43 0.74 -21.90 16 16 Si 0.89 19.70 29.54 -169.99 -5.02 14.68 16 17 H -0.28 -6.19 7.11 56.52 0.40 -5.78 16 18 H -0.29 -6.22 7.11 56.52 0.40 -5.81 16 19 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 20 C 0.13 2.52 4.63 -4.04 -0.02 2.50 16 21 C -0.08 -1.40 0.85 -154.51 -0.13 -1.53 16 22 C -0.14 -2.36 7.09 37.16 0.26 -2.09 16 23 C -0.14 -1.85 8.47 37.16 0.31 -1.54 16 24 C -0.13 -2.19 7.32 37.16 0.27 -1.91 16 25 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.07 1.23 7.42 -51.93 -0.39 0.84 16 28 H 0.16 1.88 8.06 -52.49 -0.42 1.46 16 29 H 0.23 5.11 3.43 -52.48 -0.18 4.93 16 30 H 0.05 1.08 5.64 -51.93 -0.29 0.79 16 31 H 0.05 1.23 4.47 -51.93 -0.23 1.00 16 32 H 0.27 6.51 8.31 -40.82 -0.34 6.17 16 33 H 0.07 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.07 1.45 7.25 -51.93 -0.38 1.08 16 35 H 0.05 0.93 7.93 -51.93 -0.41 0.52 16 36 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.07 1.29 5.80 -51.93 -0.30 0.98 16 38 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 39 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 40 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.05 1.02 6.90 -51.93 -0.36 0.66 16 42 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 1.02 7.87 -51.93 -0.41 0.61 16 LS Contribution 335.64 15.07 5.06 5.06 Total: -1.00 -28.06 335.64 -7.26 -35.32 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -6.66 Total: 10.85 kcal Atomic # 6 Polarization: -6.86 SS G_CDS: -1.02 Total: -7.88 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: 0.31 Total: -44.31 kcal Atomic # 8 Polarization: -13.79 SS G_CDS: 0.08 Total: -13.71 kcal Atomic # 14 Polarization: 19.70 SS G_CDS: -5.02 Total: 14.68 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -28.06 -7.26 -35.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344528668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.951 kcal (2) G-P(sol) polarization free energy of solvation -28.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.627 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds