Wall clock time and date at job start Tue Mar 31 2020 00:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.34482 * 126.83360 * 2 1 4 4 N 1.36447 * 108.85570 * 180.19875 * 3 2 1 5 5 H 0.97003 * 124.85163 * 179.82251 * 4 3 2 6 6 C 1.34658 * 110.29677 * 359.55329 * 4 3 2 7 7 C 1.36768 * 108.40022 * 0.26790 * 6 4 3 8 8 C 1.47256 * 126.94422 * 180.02562 * 7 6 4 9 9 O 1.21634 * 119.99794 * 159.54019 * 8 7 6 10 10 N 1.34771 * 120.00201 * 339.53708 * 8 7 6 11 11 C 1.46498 * 120.00226 * 5.83212 * 10 8 7 12 12 C 1.50694 * 109.47613 * 88.64581 * 11 10 8 13 13 H 1.07995 * 120.00017 * 0.02562 * 12 11 10 14 14 C 1.37880 * 120.00333 * 180.02562 * 12 11 10 15 15 N 1.31521 * 119.99615 * 0.02562 * 14 12 11 16 16 Si 1.86791 * 120.00082 * 180.02562 * 14 12 11 17 17 H 1.48505 * 109.47297 * 90.00045 * 16 14 12 18 18 H 1.48508 * 109.46967 * 209.99934 * 16 14 12 19 19 H 1.48498 * 109.47309 * 329.99827 * 16 14 12 20 20 C 1.46507 * 120.00153 * 185.82305 * 10 8 7 21 21 C 1.52998 * 109.47037 * 93.73519 * 20 10 8 22 22 C 1.53000 * 109.47054 * 57.78354 * 21 20 10 23 23 C 1.52996 * 109.47317 * 177.78502 * 21 20 10 24 24 C 1.53004 * 109.46882 * 297.78525 * 21 20 10 25 25 H 1.09004 * 109.46918 * 270.27035 * 1 2 3 26 26 H 1.08996 * 109.47237 * 30.27265 * 1 2 3 27 27 H 1.08995 * 109.47384 * 150.27155 * 1 2 3 28 28 H 1.07997 * 125.57721 * 0.04085 * 3 2 1 29 29 H 1.08007 * 125.80010 * 180.24543 * 6 4 3 30 30 H 1.09001 * 109.47617 * 208.65302 * 11 10 8 31 31 H 1.09005 * 109.46721 * 328.64666 * 11 10 8 32 32 H 0.96998 * 119.99598 * 179.97438 * 15 14 12 33 33 H 1.09002 * 109.47031 * 213.73519 * 20 10 8 34 34 H 1.09000 * 109.47032 * 333.73595 * 20 10 8 35 35 H 1.08998 * 109.47445 * 59.99959 * 22 21 20 36 36 H 1.09006 * 109.46856 * 180.02562 * 22 21 20 37 37 H 1.09002 * 109.47404 * 299.99940 * 22 21 20 38 38 H 1.08996 * 109.47035 * 59.99685 * 23 21 20 39 39 H 1.08995 * 109.47545 * 180.02562 * 23 21 20 40 40 H 1.09002 * 109.47055 * 300.00417 * 23 21 20 41 41 H 1.08993 * 109.47111 * 65.66477 * 24 21 20 42 42 H 1.09000 * 109.46867 * 185.66369 * 24 21 20 43 43 H 1.08994 * 109.47155 * 305.66015 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3132 1.0764 0.0000 4 7 3.6110 0.6552 -0.0045 5 1 4.3840 1.2413 -0.0079 6 6 3.6656 -0.6902 0.0024 7 6 2.3864 -1.1741 0.0056 8 6 1.9749 -2.5880 0.0136 9 8 0.8575 -2.8941 0.3839 10 7 2.8365 -3.5428 -0.3894 11 6 4.2211 -3.1907 -0.7135 12 6 5.0644 -3.2694 0.5328 13 1 4.6142 -3.5538 1.4724 14 6 6.4109 -2.9784 0.4738 15 7 6.9590 -2.6317 -0.6704 16 14 7.4563 -3.0767 2.0186 17 1 8.0119 -4.4473 2.1540 18 1 8.5696 -2.0982 1.9260 19 1 6.6187 -2.7628 3.2039 20 6 2.3884 -4.9331 -0.5033 21 6 1.9382 -5.2078 -1.9395 22 6 3.0926 -4.9162 -2.9004 23 6 1.5224 -6.6742 -2.0720 24 6 0.7495 -4.3076 -2.2824 25 1 -0.3633 0.0048 1.0277 26 1 -0.3633 0.8875 -0.5180 27 1 -0.3634 -0.8924 -0.5096 28 1 1.9869 2.1058 0.0006 29 1 4.5664 -1.2860 0.0047 30 1 4.6080 -3.8859 -1.4586 31 1 4.2544 -2.1764 -1.1113 32 1 7.9062 -2.4266 -0.7119 33 1 3.2098 -5.6018 -0.2457 34 1 1.5544 -5.1029 0.1777 35 1 3.9395 -5.5574 -2.6561 36 1 2.7717 -5.1115 -3.9237 37 1 3.3889 -3.8715 -2.8061 38 1 0.7001 -6.8819 -1.3874 39 1 1.2021 -6.8701 -3.0953 40 1 2.3693 -7.3155 -1.8276 41 1 1.0715 -3.2663 -2.2862 42 1 0.3653 -4.5727 -3.2674 43 1 -0.0351 -4.4426 -1.5379 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344528668.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:16 Heat of formation + Delta-G solvation = -9.271098 kcal Electronic energy + Delta-G solvation = -23250.818225 eV Core-core repulsion = 20103.205042 eV Total energy + Delta-G solvation = -3147.613183 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.05343 -40.41498 -37.93620 -36.18295 -34.22760 -33.19481 -30.92035 -29.47079 -28.11484 -28.08406 -27.24632 -26.99745 -24.90836 -22.76400 -20.98377 -19.68183 -19.42222 -18.74251 -18.33303 -17.16544 -16.74420 -16.42633 -16.01833 -15.36344 -15.14982 -14.85151 -14.58119 -14.43276 -14.34314 -13.91981 -13.88695 -13.48632 -13.38028 -13.22559 -12.98953 -12.87733 -12.80216 -12.50458 -12.45686 -12.35018 -12.12869 -11.99716 -11.82552 -11.59114 -11.49180 -11.42094 -10.70249 -10.44290 -9.48040 -9.15958 -8.96300 -8.19259 -6.33798 1.09520 1.38716 1.43251 1.51644 1.64703 2.35112 2.47674 2.67835 2.83551 3.07728 3.90540 3.94570 4.09091 4.22307 4.27256 4.50505 4.59639 4.62201 4.72012 4.78851 4.79469 4.88783 4.93521 4.95605 4.98461 5.03169 5.08384 5.09220 5.20663 5.24370 5.25971 5.28256 5.36427 5.47474 5.52734 5.55499 5.70562 5.98410 6.08984 6.11538 6.19922 6.65550 6.86409 6.94243 7.34464 7.65088 8.82476 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.011415 B = 0.009165 C = 0.005780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2452.399705 B = 3054.482492 C = 4842.818816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.156 4.156 3 C -0.017 4.017 4 N -0.547 5.547 5 H 0.429 0.571 6 C 0.043 3.957 7 C -0.270 4.270 8 C 0.583 3.417 9 O -0.599 6.599 10 N -0.593 5.593 11 C 0.229 3.771 12 C -0.543 4.543 13 H 0.043 0.957 14 C 0.034 3.966 15 N -0.908 5.908 16 Si 0.945 3.055 17 H -0.277 1.277 18 H -0.275 1.275 19 H -0.278 1.278 20 C 0.127 3.873 21 C -0.080 4.080 22 C -0.134 4.134 23 C -0.129 4.129 24 C -0.119 4.119 25 H 0.057 0.943 26 H 0.084 0.916 27 H 0.042 0.958 28 H 0.206 0.794 29 H 0.206 0.794 30 H 0.035 0.965 31 H 0.046 0.954 32 H 0.270 0.730 33 H 0.067 0.933 34 H 0.063 0.937 35 H 0.050 0.950 36 H 0.066 0.934 37 H 0.040 0.960 38 H 0.057 0.943 39 H 0.071 0.929 40 H 0.060 0.940 41 H 0.024 0.976 42 H 0.066 0.934 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.920 3.272 -3.379 7.561 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.162 4.162 3 C -0.144 4.144 4 N -0.142 5.142 5 H 0.267 0.733 6 C -0.094 4.094 7 C -0.279 4.279 8 C 0.375 3.625 9 O -0.484 6.484 10 N -0.322 5.322 11 C 0.109 3.891 12 C -0.582 4.582 13 H 0.062 0.938 14 C -0.168 4.168 15 N -0.546 5.546 16 Si 0.771 3.229 17 H -0.203 1.203 18 H -0.200 1.200 19 H -0.203 1.203 20 C 0.004 3.996 21 C -0.082 4.082 22 C -0.191 4.191 23 C -0.187 4.187 24 C -0.176 4.176 25 H 0.076 0.924 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.223 0.777 29 H 0.222 0.778 30 H 0.053 0.947 31 H 0.063 0.937 32 H 0.080 0.920 33 H 0.086 0.914 34 H 0.081 0.919 35 H 0.069 0.931 36 H 0.085 0.915 37 H 0.059 0.941 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.085 0.915 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -6.197 3.264 -3.293 7.739 hybrid contribution 1.299 -0.009 0.949 1.609 sum -4.898 3.255 -2.343 6.330 Atomic orbital electron populations 1.19980 0.89024 1.01710 1.01351 1.20821 0.96170 0.90781 1.08439 1.22028 0.82154 0.99827 1.10439 1.41722 1.08804 1.06364 1.57282 0.73260 1.23927 1.00758 0.84351 1.00334 1.20563 0.94049 0.92929 1.20392 1.17679 0.83641 0.85261 0.75878 1.90578 1.22467 1.83779 1.51573 1.47895 1.12060 1.07239 1.64993 1.19811 0.76315 0.97559 0.95431 1.21637 0.93971 1.47143 0.95466 0.93839 1.25467 0.98238 0.94528 0.98546 1.69999 1.13167 1.45882 1.25586 0.85747 0.78588 0.78228 0.80304 1.20311 1.20013 1.20327 1.21453 0.99123 0.82375 0.96673 1.20928 0.95697 0.97083 0.94451 1.21914 0.97312 1.01073 0.98839 1.21733 1.01403 0.92964 1.02574 1.21655 0.97047 0.98007 1.00931 0.92436 0.89739 0.93921 0.77689 0.77762 0.94712 0.93669 0.92043 0.91427 0.91854 0.93062 0.91542 0.94070 0.92418 0.90963 0.92117 0.95638 0.91465 0.93635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.02 9.91 71.24 0.71 -1.31 16 2 C -0.16 -5.66 6.35 -18.51 -0.12 -5.78 16 3 C -0.02 -0.49 11.82 83.12 0.98 0.49 16 4 N -0.55 -16.99 5.90 -194.56 -1.15 -18.13 16 5 H 0.43 10.15 8.96 -92.71 -0.83 9.32 16 6 C 0.04 1.76 9.51 83.91 0.80 2.56 16 7 C -0.27 -11.83 6.01 -19.04 -0.11 -11.94 16 8 C 0.58 27.56 6.15 86.61 0.53 28.10 16 9 O -0.60 -29.87 14.42 -4.14 -0.06 -29.93 16 10 N -0.59 -26.72 2.00 -830.22 -1.66 -28.38 16 11 C 0.23 10.94 3.46 85.63 0.30 11.24 16 12 C -0.54 -27.77 7.58 25.60 0.19 -27.58 16 13 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 14 C 0.03 1.69 5.07 84.65 0.43 2.11 16 15 N -0.91 -46.41 13.29 21.45 0.28 -46.12 16 16 Si 0.95 40.49 29.54 68.60 2.03 42.51 16 17 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 18 H -0.28 -11.29 7.11 99.48 0.71 -10.59 16 19 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 20 C 0.13 5.04 4.63 86.38 0.40 5.44 16 21 C -0.08 -2.65 0.85 -52.18 -0.04 -2.69 16 22 C -0.13 -4.47 7.09 71.98 0.51 -3.96 16 23 C -0.13 -3.32 8.47 71.98 0.61 -2.71 16 24 C -0.12 -4.03 7.32 71.98 0.53 -3.51 16 25 H 0.06 1.80 8.14 -2.38 -0.02 1.78 16 26 H 0.08 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.04 1.55 7.42 -2.39 -0.02 1.53 16 28 H 0.21 3.82 8.06 -2.91 -0.02 3.80 16 29 H 0.21 9.50 3.43 -2.91 -0.01 9.49 16 30 H 0.03 1.72 5.64 -2.39 -0.01 1.71 16 31 H 0.05 2.25 4.47 -2.38 -0.01 2.24 16 32 H 0.27 13.10 8.31 -92.71 -0.77 12.33 16 33 H 0.07 2.68 8.10 -2.39 -0.02 2.66 16 34 H 0.06 2.61 7.25 -2.39 -0.02 2.60 16 35 H 0.05 1.72 7.93 -2.39 -0.02 1.70 16 36 H 0.07 1.87 8.14 -2.38 -0.02 1.85 16 37 H 0.04 1.58 5.80 -2.39 -0.01 1.57 16 38 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.07 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 41 H 0.02 0.98 6.90 -2.39 -0.02 0.96 16 42 H 0.07 1.89 8.14 -2.39 -0.02 1.87 16 43 H 0.04 1.63 7.87 -2.39 -0.02 1.61 16 Total: -1.00 -62.26 335.64 5.33 -56.93 By element: Atomic # 1 Polarization: 32.48 SS G_CDS: 0.18 Total: 32.66 kcal Atomic # 6 Polarization: -15.24 SS G_CDS: 5.71 Total: -9.53 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -2.52 Total: -92.64 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.06 Total: -29.93 kcal Atomic # 14 Polarization: 40.49 SS G_CDS: 2.03 Total: 42.51 kcal Total: -62.26 5.33 -56.93 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344528668.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.658 kcal (2) G-P(sol) polarization free energy of solvation -62.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.333 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.271 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds