Wall clock time and date at job start Tue Mar 31 2020 00:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 C 1.52999 * 109.46952 * 119.99476 * 2 1 3 5 5 C 1.53000 * 115.56271 * 34.31670 * 4 2 1 6 6 C 1.52997 * 117.49916 * 248.62129 * 4 2 1 7 7 C 1.53001 * 117.49610 * 179.97438 * 4 2 1 8 8 H 1.09002 * 117.51677 * 0.02562 * 7 4 2 9 9 C 1.50697 * 117.50121 * 214.98330 * 7 4 2 10 10 O 1.21290 * 119.99894 * 359.97438 * 9 7 4 11 11 N 1.34772 * 120.00198 * 179.97438 * 9 7 4 12 12 C 1.46506 * 120.00199 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.46871 * 89.99405 * 12 11 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.46499 * 119.99867 * 359.97438 * 11 9 7 22 22 C 1.52997 * 109.47186 * 269.99805 * 21 11 9 23 23 C 1.47198 * 109.47374 * 179.97438 * 22 21 11 24 24 N 6.45665 * 135.97761 * 4.46585 * 3 1 2 25 25 H 1.09007 * 109.47328 * 300.00289 * 1 2 3 26 26 H 1.08997 * 109.47323 * 59.99985 * 1 2 3 27 27 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46870 * 239.99874 * 2 1 3 29 29 H 1.08997 * 109.47422 * 59.99522 * 3 2 1 30 30 H 1.08993 * 109.46899 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46907 * 299.99797 * 3 2 1 32 32 H 1.09004 * 109.47133 * 205.68463 * 5 4 2 33 33 H 1.09005 * 109.46912 * 325.68356 * 5 4 2 34 34 H 1.09001 * 109.47372 * 85.68210 * 5 4 2 35 35 H 1.09005 * 117.49733 * 145.02199 * 6 4 2 36 36 H 1.09001 * 117.50009 * 0.02562 * 6 4 2 37 37 H 1.09005 * 109.46943 * 329.99725 * 12 11 9 38 38 H 1.09002 * 109.47064 * 209.99988 * 12 11 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.47418 * 30.00487 * 21 11 9 41 41 H 1.09004 * 109.47077 * 150.00105 * 21 11 9 42 42 H 1.09003 * 109.47333 * 300.00653 * 22 21 11 43 43 H 1.09004 * 109.46868 * 60.00171 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.1852 -1.8962 1.7285 6 6 2.7419 0.1228 2.3151 7 6 3.5550 -0.8285 1.4340 8 1 4.1886 -0.3850 0.6659 9 6 4.0908 -2.0830 2.0743 10 8 3.3282 -2.9598 2.4218 11 7 5.4174 -2.2307 2.2609 12 6 5.9382 -3.4501 2.8839 13 6 6.2292 -4.4742 1.8174 14 1 6.0450 -4.2401 0.7793 15 6 6.7306 -5.7102 2.1669 16 7 6.9850 -6.6038 1.2360 17 14 7.0484 -6.1154 3.9625 18 1 8.4368 -5.7275 4.3193 19 1 6.0906 -5.3673 4.8158 20 1 6.8705 -7.5736 4.1798 21 6 6.3385 -1.1719 1.8407 22 6 6.7735 -1.4185 0.3948 23 6 7.6986 -0.3543 -0.0277 24 7 8.4135 0.4707 -0.3494 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.3352 -2.0421 2.7982 33 1 0.1339 -1.6835 1.5346 34 1 1.4776 -2.8000 1.1939 35 1 2.5946 -0.1591 3.3577 36 1 2.8400 1.1919 2.1265 37 1 5.1978 -3.8484 3.5777 38 1 6.8555 -3.2183 3.4251 39 1 7.3381 -7.4731 1.4819 40 1 5.8379 -0.2062 1.9099 41 1 7.2147 -1.1742 2.4891 42 1 7.2741 -2.3843 0.3256 43 1 5.8973 -1.4163 -0.2536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356456460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:23 Heat of formation + Delta-G solvation = 9.257081 kcal Electronic energy + Delta-G solvation = -22348.351263 eV Core-core repulsion = 19201.541522 eV Total energy + Delta-G solvation = -3146.809741 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.20277 -37.98459 -36.66252 -35.23331 -33.15842 -32.61804 -30.87822 -29.25656 -28.20058 -26.28510 -24.40392 -23.63776 -22.98679 -21.54839 -18.72200 -18.01474 -17.49353 -16.95396 -16.64359 -15.56559 -15.39854 -14.60613 -14.53073 -14.43337 -13.99658 -13.52897 -13.38406 -13.09745 -12.91443 -12.62034 -12.47441 -12.36839 -12.32134 -12.27982 -11.68537 -11.66732 -11.58563 -11.54491 -11.39324 -11.10284 -10.96761 -10.75402 -10.64095 -10.51060 -10.18977 -9.88821 -9.56242 -9.52191 -8.83314 -8.63507 -7.87156 -6.13604 -4.12873 2.80962 2.94288 3.09256 3.24222 3.32941 3.36485 3.61094 3.96401 4.27466 4.35996 4.67066 4.74040 4.88237 4.96428 5.04207 5.12270 5.18946 5.26472 5.30407 5.39868 5.53526 5.55880 5.57924 5.66506 5.80718 5.81820 5.92248 5.97503 5.99032 6.07112 6.18601 6.20662 6.24942 6.32231 6.41777 6.60662 6.80089 6.92965 7.24825 7.55466 7.70899 8.14127 8.40372 8.87040 8.93284 9.46971 10.99137 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.005772 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.708841 B = 4849.619527 C = 6096.872485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.061 4.061 3 C -0.151 4.151 4 C -0.085 4.085 5 C -0.108 4.108 6 C -0.156 4.156 7 C -0.185 4.185 8 H 0.117 0.883 9 C 0.540 3.460 10 O -0.526 6.526 11 N -0.592 5.592 12 C 0.214 3.786 13 C -0.531 4.531 14 H 0.078 0.922 15 C 0.074 3.926 16 N -0.895 5.895 17 Si 0.872 3.128 18 H -0.276 1.276 19 H -0.264 1.264 20 H -0.285 1.285 21 C 0.126 3.874 22 C -0.055 4.055 23 C 0.220 3.780 24 N -0.454 5.454 25 H 0.055 0.945 26 H 0.051 0.949 27 H 0.062 0.938 28 H 0.075 0.925 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.104 0.896 37 H 0.043 0.957 38 H 0.026 0.974 39 H 0.265 0.735 40 H 0.077 0.923 41 H 0.084 0.916 42 H 0.134 0.866 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.089 14.526 0.167 17.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 C -0.208 4.208 4 C -0.086 4.086 5 C -0.165 4.165 6 C -0.193 4.193 7 C -0.206 4.206 8 H 0.135 0.865 9 C 0.327 3.673 10 O -0.402 6.402 11 N -0.323 5.323 12 C 0.094 3.906 13 C -0.569 4.569 14 H 0.096 0.904 15 C -0.128 4.128 16 N -0.533 5.533 17 Si 0.699 3.301 18 H -0.201 1.201 19 H -0.188 1.188 20 H -0.210 1.210 21 C -0.001 4.001 22 C -0.096 4.096 23 C -0.098 4.098 24 N -0.132 5.132 25 H 0.074 0.926 26 H 0.070 0.930 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.078 0.922 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.089 0.911 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.061 0.939 38 H 0.044 0.956 39 H 0.075 0.925 40 H 0.095 0.905 41 H 0.103 0.897 42 H 0.151 0.849 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -8.354 15.067 -0.127 17.228 hybrid contribution 0.317 -0.754 0.817 1.156 sum -8.037 14.313 0.690 16.429 Atomic orbital electron populations 1.21888 0.94894 1.02146 1.01321 1.20609 0.95832 0.95202 0.96275 1.21984 1.01066 0.96069 1.01655 1.21546 0.91364 0.98908 0.96738 1.21459 0.96872 0.96015 1.02106 1.23281 1.02536 0.96894 0.96608 1.22495 0.95637 0.98425 1.04072 0.86489 1.19449 0.82153 0.86818 0.78868 1.90683 1.56176 1.42868 1.50498 1.47847 1.04916 1.19372 1.60121 1.19737 0.94275 0.82103 0.94506 1.21324 1.43361 0.97537 0.94673 0.90364 1.24844 0.94887 0.95979 0.97130 1.69885 1.44406 1.06256 1.32767 0.86910 0.78954 0.78220 0.86038 1.20142 1.18847 1.21036 1.21252 0.94791 0.91069 0.92950 1.20024 0.96399 0.94732 0.98433 1.29385 0.93658 0.93776 0.92971 1.81266 1.10891 1.11654 1.09404 0.92617 0.93002 0.91869 0.90703 0.92249 0.92574 0.92770 0.91822 0.93053 0.91141 0.88627 0.87795 0.93941 0.95564 0.92532 0.90511 0.89739 0.84869 0.87636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.31 8.20 37.16 0.30 -1.00 16 2 C -0.06 -0.61 3.15 -90.62 -0.29 -0.90 16 3 C -0.15 -1.28 7.79 37.16 0.29 -0.99 16 4 C -0.08 -1.05 2.46 -154.51 -0.38 -1.43 16 5 C -0.11 -1.52 7.73 37.16 0.29 -1.23 16 6 C -0.16 -1.76 8.92 -26.71 -0.24 -2.00 16 7 C -0.19 -2.46 4.17 -91.75 -0.38 -2.84 16 8 H 0.12 1.34 5.95 -51.93 -0.31 1.03 16 9 C 0.54 9.73 7.44 -10.99 -0.08 9.65 16 10 O -0.53 -11.52 12.68 5.55 0.07 -11.45 16 11 N -0.59 -10.56 2.46 -175.06 -0.43 -10.99 16 12 C 0.21 4.71 4.27 -5.19 -0.02 4.69 16 13 C -0.53 -13.79 9.48 -34.44 -0.33 -14.11 16 14 H 0.08 2.18 7.67 -52.49 -0.40 1.78 16 15 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 16 N -0.90 -26.22 13.96 55.43 0.77 -25.45 16 17 Si 0.87 20.51 27.47 -169.99 -4.67 15.84 16 18 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 19 H -0.26 -6.06 6.54 56.52 0.37 -5.69 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C 0.13 1.68 5.04 -4.04 -0.02 1.66 16 22 C -0.05 -0.71 5.91 -29.52 -0.17 -0.89 16 23 C 0.22 3.01 15.44 -20.69 -0.32 2.69 16 24 N -0.45 -7.22 18.55 42.24 0.78 -6.44 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.06 0.59 6.45 -51.93 -0.33 0.26 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.47 6.98 -51.93 -0.36 0.11 16 30 H 0.06 0.48 7.07 -51.93 -0.37 0.11 16 31 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 1.00 7.01 -51.93 -0.36 0.63 16 33 H 0.05 0.60 5.58 -51.93 -0.29 0.31 16 34 H 0.07 1.18 7.26 -51.93 -0.38 0.80 16 35 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 36 H 0.10 0.95 5.85 -51.93 -0.30 0.64 16 37 H 0.04 1.03 6.48 -51.93 -0.34 0.70 16 38 H 0.03 0.54 7.32 -51.93 -0.38 0.16 16 39 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.08 0.83 6.64 -51.93 -0.34 0.48 16 41 H 0.08 1.07 7.89 -51.93 -0.41 0.66 16 42 H 0.13 2.05 7.26 -51.93 -0.38 1.67 16 43 H 0.11 1.25 7.46 -51.93 -0.39 0.87 16 LS Contribution 343.13 15.07 5.17 5.17 Total: -1.00 -31.29 343.13 -6.37 -37.66 By element: Atomic # 1 Polarization: 7.04 SS G_CDS: -6.62 Total: 0.42 kcal Atomic # 6 Polarization: -3.32 SS G_CDS: -1.45 Total: -4.77 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 1.13 Total: -42.88 kcal Atomic # 8 Polarization: -11.52 SS G_CDS: 0.07 Total: -11.45 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.29 -6.37 -37.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356456460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.917 kcal (2) G-P(sol) polarization free energy of solvation -31.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.369 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds