Wall clock time and date at job start Tue Mar 31 2020 00:20:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.46871 * 2 1 4 4 C 1.52999 * 109.46952 * 119.99476 * 2 1 3 5 5 C 1.53000 * 115.56271 * 34.31670 * 4 2 1 6 6 C 1.52997 * 117.49916 * 248.62129 * 4 2 1 7 7 C 1.53001 * 117.49610 * 179.97438 * 4 2 1 8 8 H 1.09002 * 117.51677 * 0.02562 * 7 4 2 9 9 C 1.50697 * 117.50121 * 214.98330 * 7 4 2 10 10 O 1.21290 * 119.99894 * 359.97438 * 9 7 4 11 11 N 1.34772 * 120.00198 * 179.97438 * 9 7 4 12 12 C 1.46506 * 120.00199 * 179.97438 * 11 9 7 13 13 C 1.50696 * 109.46871 * 89.99405 * 12 11 9 14 14 H 1.07999 * 120.00319 * 0.02562 * 13 12 11 15 15 C 1.37885 * 119.99717 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 180.02562 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 0.02562 * 15 13 12 18 18 H 1.48500 * 109.47353 * 269.99586 * 17 15 13 19 19 H 1.48501 * 109.47293 * 30.00037 * 17 15 13 20 20 H 1.48504 * 109.46680 * 149.99835 * 17 15 13 21 21 C 1.46499 * 119.99867 * 359.97438 * 11 9 7 22 22 C 1.52997 * 109.47186 * 269.99805 * 21 11 9 23 23 C 1.47198 * 109.47374 * 179.97438 * 22 21 11 24 24 N 6.45665 * 135.97761 * 4.46585 * 3 1 2 25 25 H 1.09007 * 109.47328 * 300.00289 * 1 2 3 26 26 H 1.08997 * 109.47323 * 59.99985 * 1 2 3 27 27 H 1.08997 * 109.47050 * 180.02562 * 1 2 3 28 28 H 1.08992 * 109.46870 * 239.99874 * 2 1 3 29 29 H 1.08997 * 109.47422 * 59.99522 * 3 2 1 30 30 H 1.08993 * 109.46899 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46907 * 299.99797 * 3 2 1 32 32 H 1.09004 * 109.47133 * 205.68463 * 5 4 2 33 33 H 1.09005 * 109.46912 * 325.68356 * 5 4 2 34 34 H 1.09001 * 109.47372 * 85.68210 * 5 4 2 35 35 H 1.09005 * 117.49733 * 145.02199 * 6 4 2 36 36 H 1.09001 * 117.50009 * 0.02562 * 6 4 2 37 37 H 1.09005 * 109.46943 * 329.99725 * 12 11 9 38 38 H 1.09002 * 109.47064 * 209.99988 * 12 11 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 40 40 H 1.08994 * 109.47418 * 30.00487 * 21 11 9 41 41 H 1.09004 * 109.47077 * 150.00105 * 21 11 9 42 42 H 1.09003 * 109.47333 * 300.00653 * 22 21 11 43 43 H 1.09004 * 109.46868 * 60.00171 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.1852 -1.8962 1.7285 6 6 2.7419 0.1228 2.3151 7 6 3.5550 -0.8285 1.4340 8 1 4.1886 -0.3850 0.6659 9 6 4.0908 -2.0830 2.0743 10 8 3.3282 -2.9598 2.4218 11 7 5.4174 -2.2307 2.2609 12 6 5.9382 -3.4501 2.8839 13 6 6.2292 -4.4742 1.8174 14 1 6.0450 -4.2401 0.7793 15 6 6.7306 -5.7102 2.1669 16 7 6.9850 -6.6038 1.2360 17 14 7.0484 -6.1154 3.9625 18 1 8.4368 -5.7275 4.3193 19 1 6.0906 -5.3673 4.8158 20 1 6.8705 -7.5736 4.1798 21 6 6.3385 -1.1719 1.8407 22 6 6.7735 -1.4185 0.3948 23 6 7.6986 -0.3543 -0.0277 24 7 8.4135 0.4707 -0.3494 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8899 29 1 1.6766 1.9564 0.8899 30 1 3.1299 1.4426 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.3352 -2.0421 2.7982 33 1 0.1339 -1.6835 1.5346 34 1 1.4776 -2.8000 1.1939 35 1 2.5946 -0.1591 3.3577 36 1 2.8400 1.1919 2.1265 37 1 5.1978 -3.8484 3.5777 38 1 6.8555 -3.2183 3.4251 39 1 7.3381 -7.4731 1.4819 40 1 5.8379 -0.2062 1.9099 41 1 7.2147 -1.1742 2.4891 42 1 7.2741 -2.3843 0.3256 43 1 5.8973 -1.4163 -0.2536 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356456460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:23 Heat of formation + Delta-G solvation = -8.538098 kcal Electronic energy + Delta-G solvation = -22349.122920 eV Core-core repulsion = 19201.541522 eV Total energy + Delta-G solvation = -3147.581398 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.41121 -39.14309 -37.89666 -36.64564 -34.75162 -33.88330 -32.26375 -30.38799 -29.75282 -27.16424 -25.69286 -25.04523 -23.84273 -23.03227 -19.93756 -19.20167 -18.98907 -18.23646 -18.12116 -16.95079 -16.43710 -16.21797 -15.77070 -15.43747 -15.31142 -14.88749 -14.58865 -14.31399 -14.19555 -13.82598 -13.76737 -13.59908 -13.48400 -13.39199 -13.26593 -12.89397 -12.81511 -12.44879 -12.41095 -12.37440 -12.17940 -11.98873 -11.89462 -11.81349 -11.57367 -11.46377 -10.88328 -10.73278 -10.54980 -10.21637 -9.42264 -8.24971 -6.27465 1.36803 1.41507 1.50322 1.60979 1.81063 1.85583 2.27432 2.37676 2.90527 3.09728 3.12199 3.66768 3.78176 3.93386 4.04258 4.05901 4.18650 4.26689 4.34405 4.49289 4.55960 4.74656 4.78805 4.84609 4.87906 4.90373 4.98419 5.03730 5.06141 5.10462 5.14462 5.16277 5.18144 5.30005 5.32492 5.53318 5.54937 5.57583 5.66263 5.72436 6.33224 6.58425 6.73472 6.76723 7.32920 7.53195 8.90805 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014774 B = 0.005772 C = 0.004591 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1894.708841 B = 4849.619527 C = 6096.872485 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.058 4.058 3 C -0.149 4.149 4 C -0.091 4.091 5 C -0.102 4.102 6 C -0.131 4.131 7 C -0.192 4.192 8 H 0.143 0.857 9 C 0.531 3.469 10 O -0.576 6.576 11 N -0.595 5.595 12 C 0.221 3.779 13 C -0.523 4.523 14 H 0.047 0.953 15 C 0.014 3.986 16 N -0.945 5.945 17 Si 0.935 3.065 18 H -0.256 1.256 19 H -0.256 1.256 20 H -0.290 1.290 21 C 0.121 3.879 22 C -0.043 4.043 23 C 0.247 3.753 24 N -0.485 5.485 25 H 0.061 0.939 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.066 0.934 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.064 0.936 32 H 0.041 0.959 33 H 0.072 0.928 34 H 0.034 0.966 35 H 0.086 0.914 36 H 0.138 0.862 37 H 0.019 0.981 38 H 0.049 0.951 39 H 0.264 0.736 40 H 0.114 0.886 41 H 0.095 0.905 42 H 0.108 0.892 43 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.289 17.612 0.865 19.930 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.205 4.205 4 C -0.092 4.092 5 C -0.159 4.159 6 C -0.168 4.168 7 C -0.213 4.213 8 H 0.161 0.839 9 C 0.320 3.680 10 O -0.455 6.455 11 N -0.325 5.325 12 C 0.099 3.901 13 C -0.562 4.562 14 H 0.065 0.935 15 C -0.184 4.184 16 N -0.585 5.585 17 Si 0.759 3.241 18 H -0.181 1.181 19 H -0.180 1.180 20 H -0.216 1.216 21 C -0.003 4.003 22 C -0.084 4.084 23 C -0.070 4.070 24 N -0.163 5.163 25 H 0.080 0.920 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.083 0.917 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.053 0.947 35 H 0.104 0.896 36 H 0.156 0.844 37 H 0.037 0.963 38 H 0.067 0.933 39 H 0.073 0.927 40 H 0.132 0.868 41 H 0.114 0.886 42 H 0.126 0.874 43 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -8.536 18.206 0.566 20.116 hybrid contribution 0.306 -1.734 0.534 1.840 sum -8.230 16.471 1.100 18.446 Atomic orbital electron populations 1.21880 0.94193 1.01778 1.02354 1.20618 0.96445 0.96128 0.94458 1.21976 1.01330 0.94536 1.02708 1.21651 0.90290 0.98748 0.98493 1.21337 0.98717 0.95666 1.00174 1.23385 0.99752 0.98070 0.95613 1.22459 0.96535 0.96955 1.05363 0.83904 1.20330 0.81756 0.87860 0.78017 1.90668 1.57373 1.44992 1.52509 1.47843 1.05791 1.18961 1.59884 1.19406 0.94474 0.83099 0.93144 1.21596 1.41691 0.98482 0.94389 0.93506 1.25703 0.95143 0.96061 1.01468 1.70036 1.46521 1.06876 1.35087 0.85896 0.79835 0.77544 0.80795 1.18072 1.17968 1.21649 1.21549 0.94849 0.91081 0.92830 1.19859 0.96470 0.93182 0.98889 1.29196 0.92838 0.93016 0.91958 1.81309 1.11736 1.12760 1.10523 0.91970 0.91587 0.92967 0.91533 0.91253 0.92144 0.91743 0.93998 0.90920 0.94688 0.89574 0.84402 0.96252 0.93290 0.92654 0.86805 0.88631 0.87407 0.86195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.27 8.20 71.98 0.59 -1.68 16 2 C -0.06 -1.02 3.15 -10.79 -0.03 -1.05 16 3 C -0.15 -1.89 7.79 71.98 0.56 -1.33 16 4 C -0.09 -2.09 2.46 -52.18 -0.13 -2.22 16 5 C -0.10 -2.93 7.73 71.98 0.56 -2.37 16 6 C -0.13 -2.54 8.92 30.61 0.27 -2.27 16 7 C -0.19 -4.69 4.17 -11.52 -0.05 -4.74 16 8 H 0.14 2.72 5.95 -2.39 -0.01 2.71 16 9 C 0.53 18.95 7.44 87.66 0.65 19.60 16 10 O -0.58 -26.09 12.68 -3.06 -0.04 -26.13 16 11 N -0.59 -20.69 2.46 -826.15 -2.03 -22.72 16 12 C 0.22 9.67 4.27 85.63 0.37 10.04 16 13 C -0.52 -27.81 9.48 25.60 0.24 -27.57 16 14 H 0.05 2.72 7.67 -2.91 -0.02 2.70 16 15 C 0.01 0.79 5.47 84.66 0.46 1.25 16 16 N -0.94 -57.14 13.96 21.45 0.30 -56.85 16 17 Si 0.94 42.60 27.47 68.60 1.88 44.48 16 18 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 19 H -0.26 -11.20 6.54 99.48 0.65 -10.55 16 20 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 21 C 0.12 2.92 5.04 86.38 0.44 3.36 16 22 C -0.04 -1.04 5.91 28.79 0.17 -0.87 16 23 C 0.25 6.24 15.44 89.42 1.38 7.62 16 24 N -0.49 -14.46 18.55 20.03 0.37 -14.09 16 25 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 26 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 27 H 0.05 0.92 6.45 -2.39 -0.02 0.90 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.07 0.76 6.98 -2.39 -0.02 0.75 16 30 H 0.06 0.73 7.07 -2.39 -0.02 0.72 16 31 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 32 H 0.04 1.35 7.01 -2.38 -0.02 1.33 16 33 H 0.07 1.70 5.58 -2.38 -0.01 1.69 16 34 H 0.03 1.23 7.26 -2.39 -0.02 1.21 16 35 H 0.09 1.89 8.05 -2.38 -0.02 1.87 16 36 H 0.14 1.79 5.85 -2.39 -0.01 1.78 16 37 H 0.02 0.95 6.48 -2.38 -0.02 0.93 16 38 H 0.05 1.94 7.32 -2.39 -0.02 1.92 16 39 H 0.26 15.11 8.31 -92.71 -0.77 14.34 16 40 H 0.11 1.97 6.64 -2.39 -0.02 1.95 16 41 H 0.10 2.14 7.89 -2.39 -0.02 2.12 16 42 H 0.11 3.32 7.26 -2.39 -0.02 3.30 16 43 H 0.12 2.61 7.46 -2.39 -0.02 2.60 16 Total: -1.00 -71.32 343.13 6.91 -64.40 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: 0.95 Total: 13.12 kcal Atomic # 6 Polarization: -7.71 SS G_CDS: 5.48 Total: -2.23 kcal Atomic # 7 Polarization: -92.29 SS G_CDS: -1.36 Total: -93.65 kcal Atomic # 8 Polarization: -26.09 SS G_CDS: -0.04 Total: -26.13 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.48 kcal Total: -71.32 6.91 -64.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356456460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.865 kcal (2) G-P(sol) polarization free energy of solvation -71.318 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.403 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds