Wall clock time and date at job start Tue Mar 31 2020 00:20:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47196 * 2 1 4 4 C 1.53001 * 109.47113 * 119.99911 * 2 1 3 5 5 C 1.52998 * 115.56460 * 272.57567 * 4 2 1 6 6 C 1.53005 * 117.49930 * 126.88471 * 4 2 1 7 7 C 1.52995 * 60.00060 * 252.51212 * 6 4 2 8 8 H 1.09002 * 117.52023 * 252.51406 * 7 6 4 9 9 C 1.50704 * 117.49938 * 107.48977 * 7 6 4 10 10 O 1.21277 * 119.99959 * 331.58128 * 9 7 6 11 11 N 1.34773 * 120.00330 * 151.58312 * 9 7 6 12 12 C 1.46494 * 120.00291 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47290 * 89.99867 * 12 11 9 14 14 H 1.07999 * 119.99959 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00249 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99713 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46874 * 60.00467 * 17 15 13 19 19 H 1.48504 * 109.46759 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47028 * 300.00309 * 17 15 13 21 21 C 1.46505 * 119.99677 * 0.27537 * 11 9 7 22 22 C 1.53003 * 109.46814 * 269.72543 * 21 11 9 23 23 C 1.47205 * 109.46989 * 179.97438 * 22 21 11 24 24 N 7.78944 * 77.33884 * 137.35694 * 2 1 3 25 25 H 1.09006 * 109.46844 * 307.09828 * 1 2 3 26 26 H 1.08994 * 109.47045 * 67.09530 * 1 2 3 27 27 H 1.08995 * 109.47070 * 187.09853 * 1 2 3 28 28 H 1.09001 * 109.47055 * 240.00218 * 2 1 3 29 29 H 1.09004 * 109.47162 * 172.26316 * 3 2 1 30 30 H 1.08999 * 109.47055 * 292.26411 * 3 2 1 31 31 H 1.09000 * 109.47356 * 52.26830 * 3 2 1 32 32 H 1.09001 * 109.46874 * 205.69082 * 5 4 2 33 33 H 1.09004 * 109.46975 * 325.68885 * 5 4 2 34 34 H 1.08992 * 109.46971 * 85.68728 * 5 4 2 35 35 H 1.08998 * 117.50199 * 145.01894 * 6 4 2 36 36 H 1.09010 * 117.49485 * 0.02562 * 6 4 2 37 37 H 1.09006 * 109.47198 * 210.00012 * 12 11 9 38 38 H 1.09001 * 109.47254 * 329.99797 * 12 11 9 39 39 H 0.97002 * 120.00108 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.47128 * 29.72128 * 21 11 9 41 41 H 1.08998 * 109.47277 * 149.72218 * 21 11 9 42 42 H 1.08993 * 109.47112 * 299.99657 * 22 21 11 43 43 H 1.09002 * 109.47393 * 60.00294 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.2016 0.1513 2.4956 6 6 3.0435 -1.8586 1.0482 7 6 1.6025 -2.1729 1.4550 8 1 1.4293 -2.5062 2.4783 9 6 0.7021 -2.7828 0.4117 10 8 0.8927 -2.5520 -0.7636 11 7 -0.3148 -3.5847 0.7846 12 6 -1.1896 -4.1781 -0.2296 13 6 -0.6299 -5.5097 -0.6590 14 1 0.2857 -5.8774 -0.2200 15 6 -1.2873 -6.2590 -1.6116 16 7 -2.4025 -5.8114 -2.1458 17 14 -0.5930 -7.9094 -2.1444 18 1 -0.5111 -8.8143 -0.9699 19 1 -1.4800 -8.5108 -3.1724 20 1 0.7642 -7.7146 -2.7148 21 6 -0.5487 -3.8587 2.2047 22 6 0.2390 -5.1027 2.6205 23 6 0.0045 -5.3777 4.0475 24 7 -0.1773 -5.5905 5.1485 25 1 -0.3633 0.6199 0.8197 26 1 -0.3633 0.3999 -0.9466 27 1 -0.3633 -1.0197 0.1270 28 1 1.8933 -0.5138 -0.8900 29 1 3.1212 1.4456 0.1384 30 1 1.7940 1.9148 -0.9510 31 1 1.5682 1.9947 0.8128 32 1 2.9550 -0.2866 3.1504 33 1 2.5148 1.1526 2.2000 34 1 1.2502 0.2094 3.0242 35 1 3.8188 -1.9852 1.8038 36 1 3.3406 -2.0927 0.0258 37 1 -2.1862 -4.3206 0.1886 38 1 -1.2490 -3.5138 -1.0918 39 1 -2.8648 -6.3384 -2.8162 40 1 -0.2202 -3.0055 2.7983 41 1 -1.6122 -4.0294 2.3715 42 1 -0.0894 -5.9559 2.0270 43 1 1.3026 -4.9319 2.4538 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356456465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:26 Heat of formation + Delta-G solvation = 6.009011 kcal Electronic energy + Delta-G solvation = -22583.576097 eV Core-core repulsion = 19436.625509 eV Total energy + Delta-G solvation = -3146.950588 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.23604 -37.66226 -36.61612 -35.10741 -33.31273 -32.74573 -30.72360 -28.83562 -27.52365 -26.70891 -24.43206 -23.73823 -22.37534 -21.80430 -18.91784 -17.93518 -17.39370 -16.78929 -16.24826 -15.63870 -15.10484 -14.61895 -14.50329 -14.21776 -13.97615 -13.63445 -13.44958 -13.03226 -12.89773 -12.47110 -12.38259 -12.34885 -12.32680 -12.00163 -11.69449 -11.54265 -11.49727 -11.28854 -11.09176 -10.98981 -10.87480 -10.77190 -10.56963 -10.43876 -10.15245 -9.85826 -9.65614 -9.52381 -8.85596 -8.47283 -7.80460 -6.09009 -4.14067 2.82153 2.94322 3.07799 3.28826 3.34456 3.36546 3.69678 4.14322 4.27619 4.41016 4.74754 4.84717 4.99838 5.02679 5.13249 5.24854 5.32912 5.34356 5.38609 5.47119 5.56921 5.61910 5.73031 5.78876 5.86027 5.88116 5.98329 5.99708 6.09845 6.12749 6.16671 6.21534 6.24379 6.46851 6.67436 6.71997 6.99199 7.39099 7.46305 7.70045 7.86713 8.16971 8.31133 8.84787 9.04342 9.51578 10.98989 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.006132 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.465012 B = 4565.092711 C = 5849.116110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.059 4.059 3 C -0.143 4.143 4 C -0.090 4.090 5 C -0.120 4.120 6 C -0.143 4.143 7 C -0.192 4.192 8 H 0.115 0.885 9 C 0.543 3.457 10 O -0.529 6.529 11 N -0.597 5.597 12 C 0.246 3.754 13 C -0.528 4.528 14 H 0.060 0.940 15 C 0.063 3.937 16 N -0.893 5.893 17 Si 0.894 3.106 18 H -0.277 1.277 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.123 3.877 22 C -0.054 4.054 23 C 0.220 3.780 24 N -0.454 5.454 25 H 0.042 0.958 26 H 0.050 0.950 27 H 0.066 0.934 28 H 0.089 0.911 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.104 0.896 37 H 0.033 0.967 38 H 0.045 0.955 39 H 0.264 0.736 40 H 0.074 0.926 41 H 0.085 0.915 42 H 0.130 0.870 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.743 10.530 7.951 15.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.090 4.090 5 C -0.177 4.177 6 C -0.180 4.180 7 C -0.214 4.214 8 H 0.133 0.867 9 C 0.331 3.669 10 O -0.407 6.407 11 N -0.328 5.328 12 C 0.127 3.873 13 C -0.567 4.567 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.531 5.531 17 Si 0.722 3.278 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.202 1.202 21 C -0.003 4.003 22 C -0.095 4.095 23 C -0.098 4.098 24 N -0.132 5.132 25 H 0.061 0.939 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.072 0.928 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.114 0.886 36 H 0.122 0.878 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.103 0.897 42 H 0.148 0.852 43 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.385 10.279 8.803 15.417 hybrid contribution 0.327 -1.198 -0.652 1.403 sum 7.711 9.081 8.151 14.435 Atomic orbital electron populations 1.21915 0.94925 1.02658 1.00635 1.20662 0.95972 0.94786 0.96306 1.21903 1.00590 0.96298 1.01253 1.21508 1.02136 0.87968 0.97429 1.21484 1.01558 0.99614 0.95060 1.23186 0.90343 1.01235 1.03265 1.22658 0.98352 1.00273 1.00077 0.86704 1.19205 0.80606 0.78575 0.88540 1.90676 1.70616 1.60866 1.18514 1.48140 1.31166 1.47170 1.06335 1.19336 0.88115 0.93406 0.86422 1.21385 1.09270 1.03116 1.22947 0.92229 1.24918 0.94866 0.98232 0.95891 1.69910 1.16707 1.38363 1.28145 0.86623 0.79079 0.83660 0.78455 1.20210 1.21260 1.20179 1.21273 1.00607 0.94917 0.83519 1.20026 1.03570 1.03220 0.82707 1.29319 0.92699 0.92760 0.95032 1.81176 1.09480 1.09474 1.13074 0.93870 0.93046 0.91477 0.89292 0.92843 0.92955 0.92826 0.92630 0.91220 0.92284 0.88577 0.87760 0.94920 0.93649 0.92629 0.90761 0.89679 0.85232 0.87611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.61 37.16 0.32 -1.81 16 2 C -0.06 -0.80 2.23 -90.62 -0.20 -1.00 16 3 C -0.14 -1.53 7.88 37.16 0.29 -1.24 16 4 C -0.09 -1.09 1.94 -154.51 -0.30 -1.39 16 5 C -0.12 -1.15 9.49 37.16 0.35 -0.80 16 6 C -0.14 -1.78 9.35 -26.73 -0.25 -2.03 16 7 C -0.19 -2.62 5.11 -91.77 -0.47 -3.09 16 8 H 0.12 1.32 6.08 -51.93 -0.32 1.00 16 9 C 0.54 9.86 4.86 -10.99 -0.05 9.81 16 10 O -0.53 -11.69 12.98 5.56 0.07 -11.62 16 11 N -0.60 -10.92 2.46 -175.06 -0.43 -11.35 16 12 C 0.25 5.78 5.20 -5.20 -0.03 5.75 16 13 C -0.53 -13.52 8.93 -34.44 -0.31 -13.83 16 14 H 0.06 1.48 7.44 -52.49 -0.39 1.09 16 15 C 0.06 1.70 5.46 -17.82 -0.10 1.60 16 16 N -0.89 -25.24 13.29 55.43 0.74 -24.50 16 17 Si 0.89 20.75 29.54 -169.99 -5.02 15.73 16 18 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 19 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 21 C 0.12 1.70 5.05 -4.04 -0.02 1.68 16 22 C -0.05 -0.69 6.01 -29.51 -0.18 -0.87 16 23 C 0.22 2.98 15.43 -20.76 -0.32 2.66 16 24 N -0.45 -7.18 18.54 42.15 0.78 -6.40 16 25 H 0.04 0.55 8.11 -51.93 -0.42 0.13 16 26 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.16 4.61 -51.93 -0.24 0.92 16 28 H 0.09 1.44 6.71 -51.93 -0.35 1.09 16 29 H 0.05 0.52 8.00 -51.93 -0.42 0.11 16 30 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 31 H 0.05 0.52 7.00 -51.93 -0.36 0.15 16 32 H 0.05 0.47 7.90 -51.93 -0.41 0.06 16 33 H 0.07 0.60 5.69 -51.93 -0.30 0.31 16 34 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.10 0.96 8.05 -51.93 -0.42 0.54 16 36 H 0.10 1.48 7.85 -51.92 -0.41 1.07 16 37 H 0.03 0.78 7.89 -51.93 -0.41 0.37 16 38 H 0.05 1.23 7.42 -51.93 -0.39 0.84 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.07 0.84 6.10 -51.93 -0.32 0.53 16 41 H 0.08 1.16 7.89 -51.93 -0.41 0.75 16 42 H 0.13 1.89 7.29 -51.93 -0.38 1.51 16 43 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 348.59 15.07 5.25 5.25 Total: -1.00 -30.29 348.59 -6.62 -36.91 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -6.75 Total: 0.52 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.26 Total: -4.54 kcal Atomic # 7 Polarization: -43.34 SS G_CDS: 1.09 Total: -42.25 kcal Atomic # 8 Polarization: -11.69 SS G_CDS: 0.07 Total: -11.62 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -30.29 -6.62 -36.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356456465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.919 kcal (2) G-P(sol) polarization free energy of solvation -30.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.910 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds