Wall clock time and date at job start Tue Mar 31 2020 00:20:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47196 * 2 1 4 4 C 1.53001 * 109.47113 * 119.99911 * 2 1 3 5 5 C 1.52998 * 115.56460 * 272.57567 * 4 2 1 6 6 C 1.53005 * 117.49930 * 126.88471 * 4 2 1 7 7 C 1.52995 * 60.00060 * 252.51212 * 6 4 2 8 8 H 1.09002 * 117.52023 * 252.51406 * 7 6 4 9 9 C 1.50704 * 117.49938 * 107.48977 * 7 6 4 10 10 O 1.21277 * 119.99959 * 331.58128 * 9 7 6 11 11 N 1.34773 * 120.00330 * 151.58312 * 9 7 6 12 12 C 1.46494 * 120.00291 * 180.02562 * 11 9 7 13 13 C 1.50693 * 109.47290 * 89.99867 * 12 11 9 14 14 H 1.07999 * 119.99959 * 0.02562 * 13 12 11 15 15 C 1.37881 * 120.00249 * 179.97438 * 13 12 11 16 16 N 1.31509 * 119.99713 * 0.02562 * 15 13 12 17 17 Si 1.86803 * 120.00188 * 179.97438 * 15 13 12 18 18 H 1.48496 * 109.46874 * 60.00467 * 17 15 13 19 19 H 1.48504 * 109.46759 * 180.02562 * 17 15 13 20 20 H 1.48502 * 109.47028 * 300.00309 * 17 15 13 21 21 C 1.46505 * 119.99677 * 0.27537 * 11 9 7 22 22 C 1.53003 * 109.46814 * 269.72543 * 21 11 9 23 23 C 1.47205 * 109.46989 * 179.97438 * 22 21 11 24 24 N 7.78944 * 77.33884 * 137.35694 * 2 1 3 25 25 H 1.09006 * 109.46844 * 307.09828 * 1 2 3 26 26 H 1.08994 * 109.47045 * 67.09530 * 1 2 3 27 27 H 1.08995 * 109.47070 * 187.09853 * 1 2 3 28 28 H 1.09001 * 109.47055 * 240.00218 * 2 1 3 29 29 H 1.09004 * 109.47162 * 172.26316 * 3 2 1 30 30 H 1.08999 * 109.47055 * 292.26411 * 3 2 1 31 31 H 1.09000 * 109.47356 * 52.26830 * 3 2 1 32 32 H 1.09001 * 109.46874 * 205.69082 * 5 4 2 33 33 H 1.09004 * 109.46975 * 325.68885 * 5 4 2 34 34 H 1.08992 * 109.46971 * 85.68728 * 5 4 2 35 35 H 1.08998 * 117.50199 * 145.01894 * 6 4 2 36 36 H 1.09010 * 117.49485 * 0.02562 * 6 4 2 37 37 H 1.09006 * 109.47198 * 210.00012 * 12 11 9 38 38 H 1.09001 * 109.47254 * 329.99797 * 12 11 9 39 39 H 0.97002 * 120.00108 * 179.97438 * 16 15 13 40 40 H 1.09002 * 109.47128 * 29.72128 * 21 11 9 41 41 H 1.08998 * 109.47277 * 149.72218 * 21 11 9 42 42 H 1.08993 * 109.47112 * 299.99657 * 22 21 11 43 43 H 1.09002 * 109.47393 * 60.00294 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 2.2016 0.1513 2.4956 6 6 3.0435 -1.8586 1.0482 7 6 1.6025 -2.1729 1.4550 8 1 1.4293 -2.5062 2.4783 9 6 0.7021 -2.7828 0.4117 10 8 0.8927 -2.5520 -0.7636 11 7 -0.3148 -3.5847 0.7846 12 6 -1.1896 -4.1781 -0.2296 13 6 -0.6299 -5.5097 -0.6590 14 1 0.2857 -5.8774 -0.2200 15 6 -1.2873 -6.2590 -1.6116 16 7 -2.4025 -5.8114 -2.1458 17 14 -0.5930 -7.9094 -2.1444 18 1 -0.5111 -8.8143 -0.9699 19 1 -1.4800 -8.5108 -3.1724 20 1 0.7642 -7.7146 -2.7148 21 6 -0.5487 -3.8587 2.2047 22 6 0.2390 -5.1027 2.6205 23 6 0.0045 -5.3777 4.0475 24 7 -0.1773 -5.5905 5.1485 25 1 -0.3633 0.6199 0.8197 26 1 -0.3633 0.3999 -0.9466 27 1 -0.3633 -1.0197 0.1270 28 1 1.8933 -0.5138 -0.8900 29 1 3.1212 1.4456 0.1384 30 1 1.7940 1.9148 -0.9510 31 1 1.5682 1.9947 0.8128 32 1 2.9550 -0.2866 3.1504 33 1 2.5148 1.1526 2.2000 34 1 1.2502 0.2094 3.0242 35 1 3.8188 -1.9852 1.8038 36 1 3.3406 -2.0927 0.0258 37 1 -2.1862 -4.3206 0.1886 38 1 -1.2490 -3.5138 -1.0918 39 1 -2.8648 -6.3384 -2.8162 40 1 -0.2202 -3.0055 2.7983 41 1 -1.6122 -4.0294 2.3715 42 1 -0.0894 -5.9559 2.0270 43 1 1.3026 -4.9319 2.4538 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000356456465.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:25 Heat of formation + Delta-G solvation = -10.445739 kcal Electronic energy + Delta-G solvation = -22584.289628 eV Core-core repulsion = 19436.625509 eV Total energy + Delta-G solvation = -3147.664119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.49314 -38.88278 -37.83941 -36.55511 -34.82772 -34.23393 -32.09272 -29.94893 -29.09343 -27.68196 -25.89729 -25.15277 -23.43563 -23.23361 -20.11692 -19.18463 -18.75926 -18.20075 -17.86551 -17.01850 -16.35095 -16.29521 -15.69051 -15.45410 -15.28601 -14.70774 -14.57117 -14.35151 -13.98138 -13.90492 -13.60834 -13.53213 -13.38376 -13.28195 -13.19536 -12.89580 -12.74801 -12.59730 -12.48606 -12.36830 -12.18403 -12.05246 -11.93029 -11.76258 -11.58926 -11.45633 -10.89339 -10.57316 -10.52534 -10.28467 -9.41018 -8.14001 -6.26150 1.42737 1.45821 1.51772 1.64115 1.83741 1.85992 2.30066 2.47898 3.03930 3.14449 3.17757 3.70669 3.80970 3.96437 3.99366 4.11277 4.20808 4.25190 4.41890 4.47295 4.55897 4.64440 4.82012 4.83596 4.88734 4.95976 5.03064 5.06966 5.10567 5.11731 5.14327 5.24488 5.27281 5.31567 5.37517 5.47905 5.50878 5.67930 5.71639 5.93003 6.15838 6.60281 6.80513 6.87711 7.39575 7.62506 8.93000 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014028 B = 0.006132 C = 0.004786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1995.465012 B = 4565.092711 C = 5849.116110 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.062 4.062 3 C -0.136 4.136 4 C -0.081 4.081 5 C -0.116 4.116 6 C -0.137 4.137 7 C -0.199 4.199 8 H 0.146 0.854 9 C 0.538 3.462 10 O -0.580 6.580 11 N -0.600 5.600 12 C 0.263 3.737 13 C -0.530 4.530 14 H 0.067 0.933 15 C 0.008 3.992 16 N -0.931 5.931 17 Si 0.956 3.044 18 H -0.259 1.259 19 H -0.288 1.288 20 H -0.278 1.278 21 C 0.119 3.881 22 C -0.042 4.042 23 C 0.247 3.753 24 N -0.487 5.487 25 H 0.066 0.934 26 H 0.036 0.964 27 H 0.036 0.964 28 H 0.051 0.949 29 H 0.066 0.934 30 H 0.047 0.953 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.081 0.919 34 H 0.065 0.935 35 H 0.132 0.868 36 H 0.077 0.923 37 H 0.023 0.977 38 H -0.003 1.003 39 H 0.263 0.737 40 H 0.109 0.891 41 H 0.085 0.915 42 H 0.114 0.886 43 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.683 11.065 10.585 18.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.080 4.080 3 C -0.193 4.193 4 C -0.081 4.081 5 C -0.173 4.173 6 C -0.174 4.174 7 C -0.219 4.219 8 H 0.164 0.836 9 C 0.329 3.671 10 O -0.461 6.461 11 N -0.330 5.330 12 C 0.142 3.858 13 C -0.568 4.568 14 H 0.085 0.915 15 C -0.190 4.190 16 N -0.571 5.571 17 Si 0.782 3.218 18 H -0.183 1.183 19 H -0.214 1.214 20 H -0.204 1.204 21 C -0.006 4.006 22 C -0.083 4.083 23 C -0.070 4.070 24 N -0.165 5.165 25 H 0.085 0.915 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.069 0.931 29 H 0.085 0.915 30 H 0.066 0.934 31 H 0.090 0.910 32 H 0.093 0.907 33 H 0.099 0.901 34 H 0.084 0.916 35 H 0.150 0.850 36 H 0.096 0.904 37 H 0.041 0.959 38 H 0.016 0.984 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.103 0.897 42 H 0.132 0.868 43 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 9.337 10.812 11.489 18.332 hybrid contribution -0.302 -1.302 -1.532 2.033 sum 9.035 9.510 9.957 16.468 Atomic orbital electron populations 1.21872 0.96172 1.01003 1.00798 1.20612 0.94905 0.96652 0.95840 1.21851 1.01475 0.94146 1.01869 1.21641 1.01003 0.87523 0.97982 1.21522 1.02636 0.99562 0.93557 1.23264 0.90382 1.00868 1.02897 1.22632 0.98094 1.01563 0.99644 0.83608 1.20021 0.80467 0.77678 0.88976 1.90657 1.71935 1.62371 1.21125 1.48018 1.30621 1.47060 1.07318 1.18752 0.88737 0.91957 0.86380 1.21740 1.09088 1.03574 1.22429 0.91518 1.25764 0.95211 1.01829 0.96218 1.70045 1.18213 1.39835 1.29024 0.85631 0.77893 0.79842 0.78443 1.18314 1.21400 1.20394 1.21513 1.01187 0.96805 0.81052 1.19883 1.04608 1.01938 0.81854 1.29160 0.91538 0.91729 0.94574 1.81221 1.10697 1.10500 1.14108 0.91536 0.94436 0.94493 0.93100 0.91486 0.93352 0.90961 0.90679 0.90053 0.91639 0.85017 0.90423 0.95923 0.98448 0.92800 0.87293 0.89701 0.86824 0.85422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 8.61 71.98 0.62 -3.60 16 2 C -0.06 -1.64 2.23 -10.79 -0.02 -1.66 16 3 C -0.14 -2.65 7.88 71.98 0.57 -2.08 16 4 C -0.08 -1.77 1.94 -52.18 -0.10 -1.87 16 5 C -0.12 -1.67 9.49 71.98 0.68 -0.98 16 6 C -0.14 -3.07 9.35 30.59 0.29 -2.78 16 7 C -0.20 -4.95 5.11 -11.54 -0.06 -5.01 16 8 H 0.15 2.69 6.08 -2.39 -0.01 2.67 16 9 C 0.54 19.72 4.86 87.66 0.43 20.14 16 10 O -0.58 -27.05 12.98 -3.02 -0.04 -27.09 16 11 N -0.60 -22.11 2.46 -826.16 -2.03 -24.14 16 12 C 0.26 12.91 5.20 85.63 0.45 13.36 16 13 C -0.53 -27.68 8.93 25.60 0.23 -27.45 16 14 H 0.07 3.31 7.44 -2.91 -0.02 3.29 16 15 C 0.01 0.46 5.46 84.66 0.46 0.92 16 16 N -0.93 -54.48 13.29 21.45 0.28 -54.19 16 17 Si 0.96 42.94 29.54 68.60 2.03 44.97 16 18 H -0.26 -10.80 7.11 99.48 0.71 -10.09 16 19 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 20 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 21 C 0.12 3.08 5.05 86.38 0.44 3.51 16 22 C -0.04 -0.97 6.01 28.79 0.17 -0.80 16 23 C 0.25 6.08 15.43 89.44 1.38 7.47 16 24 N -0.49 -14.33 18.54 20.01 0.37 -13.96 16 25 H 0.07 1.62 8.11 -2.38 -0.02 1.60 16 26 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 27 H 0.04 1.32 4.61 -2.39 -0.01 1.31 16 28 H 0.05 1.74 6.71 -2.39 -0.02 1.72 16 29 H 0.07 1.13 8.00 -2.38 -0.02 1.11 16 30 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.07 1.15 7.00 -2.39 -0.02 1.13 16 32 H 0.07 0.84 7.90 -2.39 -0.02 0.82 16 33 H 0.08 1.01 5.69 -2.38 -0.01 1.00 16 34 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.13 2.03 8.05 -2.39 -0.02 2.01 16 36 H 0.08 2.19 7.85 -2.38 -0.02 2.17 16 37 H 0.02 1.15 7.89 -2.38 -0.02 1.13 16 38 H 0.00 -0.15 7.42 -2.39 -0.02 -0.17 16 39 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 40 H 0.11 2.09 6.10 -2.39 -0.01 2.08 16 41 H 0.08 2.21 7.89 -2.39 -0.02 2.20 16 42 H 0.11 3.14 7.29 -2.39 -0.02 3.12 16 43 H 0.13 2.48 8.14 -2.39 -0.02 2.46 16 Total: -1.00 -69.93 348.59 7.13 -62.79 By element: Atomic # 1 Polarization: 11.45 SS G_CDS: 1.00 Total: 12.45 kcal Atomic # 6 Polarization: -6.35 SS G_CDS: 5.52 Total: -0.83 kcal Atomic # 7 Polarization: -90.92 SS G_CDS: -1.37 Total: -92.30 kcal Atomic # 8 Polarization: -27.05 SS G_CDS: -0.04 Total: -27.09 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.97 kcal Total: -69.93 7.13 -62.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356456465.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.346 kcal (2) G-P(sol) polarization free energy of solvation -69.926 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.792 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds