Wall clock time and date at job start Tue Mar 31 2020 00:20:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47176 * 2 1 4 4 C 1.53002 * 109.46639 * 120.00048 * 2 1 3 5 5 C 1.52997 * 115.55316 * 325.66267 * 4 2 1 6 6 C 1.53004 * 117.49927 * 111.37884 * 4 2 1 7 7 C 1.53004 * 60.00096 * 107.48513 * 6 4 2 8 8 H 1.09003 * 117.51496 * 252.51640 * 7 6 4 9 9 C 1.50698 * 117.50009 * 107.48833 * 7 6 4 10 10 O 1.21279 * 120.00322 * 291.37976 * 9 7 6 11 11 N 1.34777 * 119.99969 * 111.37643 * 9 7 6 12 12 C 1.46497 * 120.00178 * 180.02562 * 11 9 7 13 13 C 1.50694 * 109.47115 * 270.00180 * 12 11 9 14 14 H 1.08000 * 120.00563 * 359.97438 * 13 12 11 15 15 C 1.37885 * 119.99902 * 180.02562 * 13 12 11 16 16 N 1.31516 * 119.99913 * 359.97438 * 15 13 12 17 17 Si 1.86798 * 119.99766 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46985 * 179.97438 * 17 15 13 19 19 H 1.48494 * 109.47276 * 299.99832 * 17 15 13 20 20 H 1.48498 * 109.47150 * 60.00043 * 17 15 13 21 21 C 1.46507 * 119.99744 * 359.97438 * 11 9 7 22 22 C 1.52997 * 109.47261 * 269.99948 * 21 11 9 23 23 C 1.47199 * 109.46958 * 180.02562 * 22 21 11 24 24 N 7.22625 * 157.01699 * 187.03974 * 2 1 3 25 25 H 1.09002 * 109.46811 * 300.00633 * 1 2 3 26 26 H 1.08994 * 109.46675 * 59.99877 * 1 2 3 27 27 H 1.08994 * 109.47591 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46811 * 239.99367 * 2 1 3 29 29 H 1.09005 * 109.46633 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.47097 * 299.99544 * 3 2 1 31 31 H 1.09000 * 109.47303 * 60.00170 * 3 2 1 32 32 H 1.08997 * 109.47232 * 274.33635 * 5 4 2 33 33 H 1.09004 * 109.46837 * 34.33484 * 5 4 2 34 34 H 1.09004 * 109.47050 * 154.33431 * 5 4 2 35 35 H 1.08999 * 117.49823 * 359.97438 * 6 4 2 36 36 H 1.08996 * 117.49704 * 214.97169 * 6 4 2 37 37 H 1.09007 * 109.47078 * 149.99819 * 12 11 9 38 38 H 1.09003 * 109.46733 * 30.00541 * 12 11 9 39 39 H 0.97001 * 119.99646 * 179.97438 * 16 15 13 40 40 H 1.09000 * 109.47148 * 30.00599 * 21 11 9 41 41 H 1.09004 * 109.46943 * 149.99854 * 21 11 9 42 42 H 1.08995 * 109.47315 * 299.99705 * 22 21 11 43 43 H 1.08994 * 109.47068 * 60.00565 * 22 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 6 1.1853 -0.5481 2.5064 6 6 2.7418 -2.0664 1.0515 7 6 3.5550 -0.8282 1.4344 8 1 4.1884 -0.3844 0.6663 9 6 4.0910 -0.7553 2.8409 10 8 3.3288 -0.6169 3.7740 11 7 5.4176 -0.8440 3.0619 12 6 5.9387 -0.7738 4.4293 13 6 6.2310 0.6618 4.7823 14 1 6.0475 1.4437 4.0602 15 6 6.7339 0.9770 6.0269 16 7 6.9579 0.0249 6.9060 17 14 7.0969 2.7565 6.4641 18 1 7.6251 2.8277 7.8503 19 1 8.1058 3.3020 5.5209 20 1 5.8481 3.5542 6.3692 21 6 6.3384 -1.0119 1.9348 22 6 6.5433 -2.5032 1.6614 23 6 7.4689 -2.6718 0.5293 24 7 8.1827 -2.8003 -0.3458 25 1 -0.3633 0.5140 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5140 -0.8900 29 1 3.1301 1.4423 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.4778 0.3670 3.0214 33 1 0.1339 -0.4865 2.2253 34 1 1.3351 -1.4012 3.1681 35 1 2.8400 -2.4376 0.0313 36 1 2.5946 -2.8282 1.8169 37 1 6.8555 -1.3592 4.4993 38 1 5.1980 -1.1746 5.1214 39 1 7.3120 0.2467 7.7815 40 1 5.9194 -0.5342 1.0492 41 1 7.2965 -0.5519 2.1768 42 1 6.9623 -2.9808 2.5470 43 1 5.5852 -2.9632 1.4194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000356456472.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:20:29 Heat of formation + Delta-G solvation = 2.902144 kcal Electronic energy + Delta-G solvation = -22254.218390 eV Core-core repulsion = 19107.133079 eV Total energy + Delta-G solvation = -3147.085312 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.06269 -37.79598 -36.72755 -35.16027 -33.37250 -32.75556 -30.79433 -28.62366 -27.46908 -26.79166 -24.40072 -23.94963 -22.49540 -21.88336 -18.74664 -17.92642 -17.58056 -16.70819 -16.41153 -15.49329 -15.29083 -14.69878 -14.53768 -14.18856 -14.08124 -13.58573 -13.31997 -13.11481 -12.79405 -12.69315 -12.46321 -12.38368 -12.18859 -12.09948 -11.92907 -11.70689 -11.42847 -11.26003 -11.15062 -11.12216 -10.97504 -10.76867 -10.60692 -10.51744 -10.16073 -9.89198 -9.69039 -9.52833 -8.72384 -8.46039 -7.79273 -6.07817 -4.12273 2.75649 2.84321 3.13602 3.30618 3.35248 3.38453 3.66477 4.01472 4.19445 4.42125 4.68731 4.76610 4.90131 5.01369 5.08076 5.22925 5.25910 5.27105 5.32032 5.41365 5.51992 5.54166 5.63912 5.75739 5.83700 5.86505 5.88938 5.99193 6.01285 6.08361 6.16157 6.22382 6.32664 6.36742 6.42394 6.84813 6.97999 7.38297 7.46916 7.60817 7.88529 8.18998 8.32262 8.86751 9.05523 9.53249 11.00199 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.012047 B = 0.005986 C = 0.004547 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2323.748203 B = 4676.120191 C = 6156.324959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.058 4.058 3 C -0.146 4.146 4 C -0.086 4.086 5 C -0.106 4.106 6 C -0.153 4.153 7 C -0.185 4.185 8 H 0.117 0.883 9 C 0.537 3.463 10 O -0.527 6.527 11 N -0.595 5.595 12 C 0.246 3.754 13 C -0.528 4.528 14 H 0.057 0.943 15 C 0.063 3.937 16 N -0.894 5.894 17 Si 0.896 3.104 18 H -0.286 1.286 19 H -0.277 1.277 20 H -0.276 1.276 21 C 0.120 3.880 22 C -0.049 4.049 23 C 0.218 3.782 24 N -0.448 5.448 25 H 0.062 0.938 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.051 0.949 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.050 0.950 34 H 0.064 0.936 35 H 0.097 0.903 36 H 0.098 0.902 37 H 0.033 0.967 38 H 0.046 0.954 39 H 0.264 0.736 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.115 0.885 43 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.949 -3.254 -13.085 16.183 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.077 4.077 3 C -0.203 4.203 4 C -0.087 4.087 5 C -0.163 4.163 6 C -0.190 4.190 7 C -0.206 4.206 8 H 0.135 0.865 9 C 0.324 3.676 10 O -0.404 6.404 11 N -0.326 5.326 12 C 0.127 3.873 13 C -0.566 4.566 14 H 0.075 0.925 15 C -0.139 4.139 16 N -0.533 5.533 17 Si 0.724 3.276 18 H -0.212 1.212 19 H -0.203 1.203 20 H -0.202 1.202 21 C -0.006 4.006 22 C -0.091 4.091 23 C -0.099 4.099 24 N -0.126 5.126 25 H 0.081 0.919 26 H 0.070 0.930 27 H 0.074 0.926 28 H 0.086 0.914 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.068 0.932 34 H 0.083 0.917 35 H 0.115 0.885 36 H 0.116 0.884 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.074 0.926 40 H 0.093 0.907 41 H 0.109 0.891 42 H 0.133 0.867 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -8.206 -3.397 -13.652 16.286 hybrid contribution 0.299 1.024 0.601 1.225 sum -7.907 -2.373 -13.051 15.442 Atomic orbital electron populations 1.21894 0.94970 1.01727 1.01693 1.20665 0.95776 0.95922 0.95294 1.21820 1.01245 0.95652 1.01605 1.21523 0.91623 0.98165 0.97377 1.21435 0.96749 1.03934 0.94152 1.23167 1.02689 0.90915 1.02247 1.22497 0.95517 1.05196 0.97363 0.86549 1.19413 0.82390 0.77014 0.88815 1.90681 1.56165 1.48784 1.44724 1.48163 1.04827 1.70620 1.08955 1.19322 0.94735 0.97305 0.75936 1.21383 1.43014 0.92865 0.99385 0.92486 1.24909 0.95472 0.97474 0.96075 1.69911 1.44817 1.32152 1.06428 0.86591 0.78630 0.84980 0.77425 1.21199 1.20268 1.20200 1.21276 0.96534 0.92129 0.90704 1.19900 0.96308 1.01029 0.91866 1.29173 0.93699 0.92988 0.94086 1.81223 1.10674 1.08900 1.11787 0.91864 0.93048 0.92627 0.91383 0.92603 0.93021 0.92278 0.91280 0.93172 0.91749 0.88487 0.88352 0.94855 0.93622 0.92647 0.90684 0.89083 0.86687 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.20 37.16 0.30 -1.03 16 2 C -0.06 -0.60 2.98 -90.62 -0.27 -0.87 16 3 C -0.15 -1.56 9.03 37.16 0.34 -1.23 16 4 C -0.09 -1.07 1.91 -154.50 -0.29 -1.37 16 5 C -0.11 -1.52 7.73 37.16 0.29 -1.23 16 6 C -0.15 -1.71 9.53 -26.73 -0.25 -1.96 16 7 C -0.18 -2.49 4.49 -91.77 -0.41 -2.90 16 8 H 0.12 1.39 5.90 -51.93 -0.31 1.08 16 9 C 0.54 9.89 7.44 -10.99 -0.08 9.80 16 10 O -0.53 -11.83 12.68 5.56 0.07 -11.76 16 11 N -0.59 -11.00 2.46 -175.06 -0.43 -11.43 16 12 C 0.25 5.85 5.16 -5.20 -0.03 5.82 16 13 C -0.53 -14.15 9.39 -34.44 -0.32 -14.47 16 14 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 15 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 16 N -0.89 -25.58 13.29 55.43 0.74 -24.85 16 17 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 18 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.12 1.66 5.19 -4.04 -0.02 1.64 16 22 C -0.05 -0.54 6.03 -29.52 -0.18 -0.72 16 23 C 0.22 2.72 15.44 -20.74 -0.32 2.40 16 24 N -0.45 -6.72 18.54 42.18 0.78 -5.94 16 25 H 0.06 0.61 6.45 -51.93 -0.33 0.28 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.63 7.90 -51.93 -0.41 0.22 16 29 H 0.05 0.62 7.29 -51.93 -0.38 0.24 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 1.17 7.26 -51.93 -0.38 0.79 16 33 H 0.05 0.60 5.58 -51.93 -0.29 0.31 16 34 H 0.06 1.02 7.01 -51.93 -0.36 0.66 16 35 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 36 H 0.10 1.16 8.05 -51.93 -0.42 0.74 16 37 H 0.03 0.79 8.07 -51.92 -0.42 0.37 16 38 H 0.05 1.24 7.42 -51.93 -0.39 0.85 16 39 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 40 H 0.07 0.89 5.99 -51.93 -0.31 0.58 16 41 H 0.09 1.35 8.07 -51.93 -0.42 0.93 16 42 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.11 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 353.82 15.07 5.33 5.33 Total: -1.00 -31.35 353.82 -6.80 -38.14 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -6.91 Total: -1.31 kcal Atomic # 6 Polarization: -3.13 SS G_CDS: -1.35 Total: -4.48 kcal Atomic # 7 Polarization: -43.30 SS G_CDS: 1.09 Total: -42.22 kcal Atomic # 8 Polarization: -11.83 SS G_CDS: 0.07 Total: -11.76 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.35 -6.80 -38.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000356456472.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.044 kcal (2) G-P(sol) polarization free energy of solvation -31.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds