Wall clock time and date at job start Tue Mar 31 2020 00:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.35450 * 126.06666 * 269.69415 * 5 4 2 7 7 N 1.35535 * 108.87225 * 179.86935 * 6 5 4 8 8 H 0.97000 * 125.67979 * 180.14047 * 7 6 5 9 9 C 1.37648 * 108.64311 * 0.39390 * 7 6 5 10 10 C 1.46682 * 126.23264 * 179.76474 * 9 7 6 11 11 O 1.21698 * 119.99767 * 180.02562 * 10 9 7 12 12 N 1.34771 * 120.00386 * 359.97438 * 10 9 7 13 13 C 1.46500 * 120.00339 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47008 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.46757 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47011 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99988 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99885 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00331 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99898 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47083 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47450 * 119.99866 * 20 18 16 23 23 H 1.48498 * 109.47176 * 239.99976 * 20 18 16 24 24 C 1.37871 * 107.53400 * 359.76191 * 9 7 6 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 34 34 H 1.08001 * 125.57017 * 359.97282 * 6 5 4 35 35 H 0.97005 * 119.99738 * 0.02562 * 12 10 9 36 36 H 1.08992 * 109.47079 * 300.00599 * 13 12 10 37 37 H 1.09004 * 109.46727 * 60.00626 * 13 12 10 38 38 H 1.09000 * 109.47347 * 300.00337 * 14 13 12 39 39 H 1.09004 * 109.47125 * 60.00552 * 14 13 12 40 40 H 1.08999 * 109.47610 * 299.99717 * 15 14 13 41 41 H 1.08999 * 109.47600 * 60.00377 * 15 14 13 42 42 H 0.96996 * 119.99842 * 180.02562 * 19 18 16 43 43 H 1.07998 * 126.45952 * 179.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.8295 -1.1889 6 6 4.4266 0.0710 -1.6799 7 7 5.6841 -0.3710 -1.4342 8 1 6.5029 0.0868 -1.6806 9 6 5.6057 -1.5805 -0.7817 10 6 6.7375 -2.4011 -0.3378 11 8 6.5367 -3.4578 0.2315 12 7 7.9999 -1.9855 -0.5614 13 6 9.1304 -2.8054 -0.1185 14 6 10.4414 -2.1106 -0.4919 15 6 11.6219 -2.9671 -0.0300 16 6 12.9134 -2.2825 -0.3971 17 1 12.8940 -1.3314 -0.9084 18 6 14.1196 -2.8704 -0.0803 19 7 14.1432 -4.0284 0.5427 20 14 15.7203 -2.0215 -0.5348 21 1 15.4227 -0.7402 -1.2239 22 1 16.5044 -1.7512 0.6970 23 1 16.5062 -2.8986 -1.4393 24 6 4.2695 -1.8802 -0.6214 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1583 -2.1369 34 1 4.1718 0.9918 -2.1835 35 1 8.1600 -1.1434 -1.0155 36 1 9.0834 -2.9353 0.9626 37 1 9.0843 -3.7802 -0.6041 38 1 10.4885 -1.9803 -1.5731 39 1 10.4872 -1.1359 -0.0061 40 1 11.5751 -3.0978 1.0511 41 1 11.5760 -3.9417 -0.5161 42 1 14.9919 -4.4418 0.7659 43 1 3.8616 -2.7606 -0.1472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000412007704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:29 Heat of formation + Delta-G solvation = -33.281659 kcal Electronic energy + Delta-G solvation = -20479.945133 eV Core-core repulsion = 17331.290774 eV Total energy + Delta-G solvation = -3148.654359 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.49785 -39.01178 -36.59903 -35.47794 -33.39336 -31.80889 -31.16460 -29.63893 -27.40102 -27.14016 -26.13482 -23.66919 -22.11402 -20.76268 -20.66483 -20.10070 -19.30317 -18.38292 -16.45679 -15.91307 -15.51095 -15.46892 -15.12942 -14.74065 -14.47981 -14.09921 -13.95076 -13.61179 -13.56912 -13.32486 -12.83501 -12.51067 -12.33958 -12.11674 -11.87759 -11.77740 -11.74692 -11.19910 -11.06679 -10.95510 -10.83715 -10.79563 -10.61455 -10.09648 -9.92717 -9.46142 -9.14843 -8.97666 -8.88383 -8.40971 -8.24837 -6.05207 -4.08584 1.42829 2.54111 2.94461 3.27263 3.30322 3.35093 3.38356 3.45480 4.41089 4.63097 4.69372 4.76603 4.86282 4.88575 5.10055 5.24319 5.30581 5.37918 5.44143 5.48663 5.59661 5.62901 5.69172 5.71940 5.75902 5.86592 5.94790 6.00784 6.09482 6.10310 6.19532 6.37986 6.53481 6.60894 6.73803 6.82625 6.94116 7.20324 7.59649 7.63040 7.71717 7.93205 8.28156 8.34565 8.98151 9.55791 11.06060 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.002345 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.460164 B =11939.838163 C =12294.742730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 C -0.147 4.147 4 C -0.040 4.040 5 C -0.174 4.174 6 C 0.021 3.979 7 N -0.539 5.539 8 H 0.416 0.584 9 C -0.047 4.047 10 C 0.581 3.419 11 O -0.532 6.532 12 N -0.727 5.727 13 C 0.117 3.883 14 C -0.121 4.121 15 C 0.023 3.977 16 C -0.523 4.523 17 H 0.055 0.945 18 C 0.056 3.944 19 N -0.893 5.893 20 Si 0.893 3.107 21 H -0.273 1.273 22 H -0.284 1.284 23 H -0.284 1.284 24 C -0.105 4.105 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.071 0.929 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.049 0.951 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.167 0.833 35 H 0.391 0.609 36 H 0.067 0.933 37 H 0.067 0.933 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.261 0.739 43 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.059 11.332 -4.736 27.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.204 4.204 4 C -0.078 4.078 5 C -0.180 4.180 6 C -0.115 4.115 7 N -0.135 5.135 8 H 0.254 0.746 9 C -0.160 4.160 10 C 0.368 3.632 11 O -0.409 6.409 12 N -0.377 5.377 13 C -0.005 4.005 14 C -0.159 4.159 15 C -0.014 4.014 16 C -0.561 4.561 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.532 5.532 20 Si 0.721 3.279 21 H -0.198 1.198 22 H -0.210 1.210 23 H -0.210 1.210 24 C -0.132 4.132 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.089 0.911 29 H 0.077 0.923 30 H 0.070 0.930 31 H 0.068 0.932 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.184 0.816 35 H 0.224 0.776 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.038 0.962 41 H 0.038 0.962 42 H 0.071 0.929 43 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -24.878 10.457 -4.261 27.321 hybrid contribution 1.517 1.096 -0.570 1.956 sum -23.362 11.553 -4.831 26.506 Atomic orbital electron populations 1.21855 0.95446 1.01659 1.01549 1.21102 0.95011 0.96450 0.98647 1.21866 1.01560 0.95842 1.01161 1.20012 0.89643 1.00690 0.97489 1.19371 0.95333 0.96494 1.06816 1.21786 0.82864 1.00995 1.05832 1.41989 1.08393 1.17664 1.45468 0.74634 1.20558 0.95664 0.90056 1.09744 1.17130 0.81723 0.85076 0.79298 1.90844 1.84841 1.22740 1.42439 1.46117 1.06055 1.24966 1.60541 1.21693 0.84371 0.94459 1.00023 1.21897 0.93562 0.99889 1.00530 1.19038 0.90623 0.94863 0.96921 1.21226 0.90918 1.05989 1.37982 0.92629 1.25040 0.99332 0.94974 0.95180 1.69975 1.26042 1.16499 1.40641 0.86519 0.83609 0.79560 0.78186 1.19800 1.20970 1.20974 1.21183 0.90179 0.99726 1.02119 0.92834 0.92866 0.92706 0.91065 0.92272 0.93026 0.93192 0.91257 0.91594 0.81581 0.77601 0.91473 0.91463 0.92771 0.92770 0.96188 0.96178 0.92935 0.83701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.19 37.16 0.34 -0.55 16 2 C -0.09 -0.67 2.91 -90.63 -0.26 -0.94 16 3 C -0.15 -0.99 8.91 37.15 0.33 -0.66 16 4 C -0.04 -0.30 5.18 -27.89 -0.14 -0.45 16 5 C -0.17 -1.65 4.81 -105.02 -0.51 -2.16 16 6 C 0.02 0.17 10.45 -16.91 -0.18 -0.01 16 7 N -0.54 -4.82 5.99 -9.39 -0.06 -4.87 16 8 H 0.42 2.61 8.19 -40.82 -0.33 2.27 16 9 C -0.05 -0.60 7.06 -81.98 -0.58 -1.17 16 10 C 0.58 9.15 7.79 -12.85 -0.10 9.05 16 11 O -0.53 -10.47 16.88 5.19 0.09 -10.38 16 12 N -0.73 -10.47 5.55 -61.62 -0.34 -10.81 16 13 C 0.12 2.05 5.67 -4.04 -0.02 2.03 16 14 C -0.12 -2.33 5.27 -26.73 -0.14 -2.47 16 15 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 16 C -0.52 -14.51 9.11 -34.44 -0.31 -14.82 16 17 H 0.06 1.48 7.74 -52.49 -0.41 1.08 16 18 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 19 N -0.89 -26.70 13.29 55.43 0.74 -25.97 16 20 Si 0.89 21.37 29.54 -169.99 -5.02 16.35 16 21 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 24 C -0.11 -1.29 10.59 -39.12 -0.41 -1.70 16 25 H 0.05 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 27 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.06 0.44 6.43 -51.93 -0.33 0.11 16 30 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.17 0.84 8.06 -52.49 -0.42 0.42 16 35 H 0.39 4.36 7.60 -40.82 -0.31 4.05 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 38 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 39 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 43 H 0.15 1.79 8.06 -52.49 -0.42 1.37 16 LS Contribution 358.31 15.07 5.40 5.40 Total: -1.00 -33.03 358.31 -8.70 -41.74 By element: Atomic # 1 Polarization: 7.72 SS G_CDS: -7.28 Total: 0.44 kcal Atomic # 6 Polarization: -9.67 SS G_CDS: -2.22 Total: -11.90 kcal Atomic # 7 Polarization: -41.99 SS G_CDS: 0.34 Total: -41.65 kcal Atomic # 8 Polarization: -10.47 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -5.02 Total: 16.35 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -33.03 -8.70 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412007704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.456 kcal (2) G-P(sol) polarization free energy of solvation -33.034 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.738 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds