Wall clock time and date at job start Tue Mar 31 2020 00:25:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.52999 * 109.47317 * 239.99858 * 2 1 3 5 5 C 1.50695 * 109.47581 * 185.00152 * 4 2 1 6 6 C 1.35450 * 126.06666 * 269.69415 * 5 4 2 7 7 N 1.35535 * 108.87225 * 179.86935 * 6 5 4 8 8 H 0.97000 * 125.67979 * 180.14047 * 7 6 5 9 9 C 1.37648 * 108.64311 * 0.39390 * 7 6 5 10 10 C 1.46682 * 126.23264 * 179.76474 * 9 7 6 11 11 O 1.21698 * 119.99767 * 180.02562 * 10 9 7 12 12 N 1.34771 * 120.00386 * 359.97438 * 10 9 7 13 13 C 1.46500 * 120.00339 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47008 * 180.02562 * 13 12 10 15 15 C 1.52995 * 109.46757 * 180.02562 * 14 13 12 16 16 C 1.50708 * 109.47011 * 180.02562 * 15 14 13 17 17 H 1.07997 * 119.99988 * 0.02562 * 16 15 14 18 18 C 1.37875 * 119.99885 * 180.02562 * 16 15 14 19 19 N 1.31517 * 120.00331 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99898 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47083 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47450 * 119.99866 * 20 18 16 23 23 H 1.48498 * 109.47176 * 239.99976 * 20 18 16 24 24 C 1.37871 * 107.53400 * 359.76191 * 9 7 6 25 25 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 26 26 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 27 27 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 29 29 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 31 31 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 32 32 H 1.08998 * 109.47565 * 305.00629 * 4 2 1 33 33 H 1.09000 * 109.46738 * 65.00110 * 4 2 1 34 34 H 1.08001 * 125.57017 * 359.97282 * 6 5 4 35 35 H 0.97005 * 119.99738 * 0.02562 * 12 10 9 36 36 H 1.08992 * 109.47079 * 300.00599 * 13 12 10 37 37 H 1.09004 * 109.46727 * 60.00626 * 13 12 10 38 38 H 1.09000 * 109.47347 * 300.00337 * 14 13 12 39 39 H 1.09004 * 109.47125 * 60.00552 * 14 13 12 40 40 H 1.08999 * 109.47610 * 299.99717 * 15 14 13 41 41 H 1.08999 * 109.47600 * 60.00377 * 15 14 13 42 42 H 0.96996 * 119.99842 * 180.02562 * 19 18 16 43 43 H 1.07998 * 126.45952 * 179.97438 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.8295 -1.1889 6 6 4.4266 0.0710 -1.6799 7 7 5.6841 -0.3710 -1.4342 8 1 6.5029 0.0868 -1.6806 9 6 5.6057 -1.5805 -0.7817 10 6 6.7375 -2.4011 -0.3378 11 8 6.5367 -3.4578 0.2315 12 7 7.9999 -1.9855 -0.5614 13 6 9.1304 -2.8054 -0.1185 14 6 10.4414 -2.1106 -0.4919 15 6 11.6219 -2.9671 -0.0300 16 6 12.9134 -2.2825 -0.3971 17 1 12.8940 -1.3314 -0.9084 18 6 14.1196 -2.8704 -0.0803 19 7 14.1432 -4.0284 0.5427 20 14 15.7203 -2.0215 -0.5348 21 1 15.4227 -0.7402 -1.2239 22 1 16.5044 -1.7512 0.6970 23 1 16.5062 -2.8986 -1.4393 24 6 4.2695 -1.8802 -0.6214 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5139 0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9562 0.8900 32 1 1.6054 -1.7198 -1.2952 33 1 1.7517 -0.1583 -2.1369 34 1 4.1718 0.9918 -2.1835 35 1 8.1600 -1.1434 -1.0155 36 1 9.0834 -2.9353 0.9626 37 1 9.0843 -3.7802 -0.6041 38 1 10.4885 -1.9803 -1.5731 39 1 10.4872 -1.1359 -0.0061 40 1 11.5751 -3.0978 1.0511 41 1 11.5760 -3.9417 -0.5161 42 1 14.9919 -4.4418 0.7659 43 1 3.8616 -2.7606 -0.1472 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000412007704.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:25:29 Heat of formation + Delta-G solvation = -54.146992 kcal Electronic energy + Delta-G solvation = -20480.849922 eV Core-core repulsion = 17331.290774 eV Total energy + Delta-G solvation = -3149.559148 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.34472 -40.25281 -37.18120 -37.03760 -35.25960 -33.22856 -32.27881 -30.62296 -28.69352 -27.89238 -27.04590 -25.27333 -23.40465 -22.39520 -21.27852 -21.08265 -20.24438 -19.32083 -18.51498 -17.08005 -16.83300 -16.61792 -16.41129 -15.85115 -15.77990 -15.08794 -14.88908 -14.54613 -14.41737 -14.27663 -14.23577 -13.77890 -13.54334 -13.51740 -12.97740 -12.79965 -12.72736 -12.59415 -12.38215 -12.32961 -11.77621 -11.72621 -11.69788 -11.60017 -11.39138 -11.29313 -11.07952 -10.58196 -10.28482 -9.74477 -9.05668 -8.21372 -6.33098 0.44983 1.40668 1.40787 1.53903 1.76646 2.03533 2.24640 2.33260 2.40925 3.12473 3.83588 4.05065 4.11836 4.13992 4.16127 4.24093 4.31550 4.40182 4.49349 4.58342 4.81845 4.89397 4.90516 4.91080 4.93677 5.08042 5.11430 5.12426 5.17776 5.19543 5.28029 5.34032 5.40952 5.49137 5.56062 5.62380 5.67248 5.81766 5.83462 5.96199 6.19514 6.43950 6.61451 6.84602 7.09241 7.36653 8.90950 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.044685 B = 0.002345 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 626.460164 B =11939.838163 C =12294.742730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.093 4.093 3 C -0.145 4.145 4 C -0.037 4.037 5 C -0.185 4.185 6 C 0.050 3.950 7 N -0.525 5.525 8 H 0.431 0.569 9 C -0.076 4.076 10 C 0.580 3.420 11 O -0.583 6.583 12 N -0.713 5.713 13 C 0.130 3.870 14 C -0.101 4.101 15 C 0.022 3.978 16 C -0.540 4.540 17 H 0.068 0.932 18 C -0.005 4.005 19 N -0.935 5.935 20 Si 0.969 3.031 21 H -0.257 1.257 22 H -0.280 1.280 23 H -0.280 1.280 24 C -0.118 4.118 25 H 0.064 0.936 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.049 0.951 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.047 0.953 32 H 0.063 0.937 33 H 0.086 0.914 34 H 0.209 0.791 35 H 0.410 0.590 36 H 0.051 0.949 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.069 0.931 40 H -0.008 1.008 41 H -0.008 1.008 42 H 0.263 0.737 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.766 14.664 -6.673 30.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.112 4.112 3 C -0.202 4.202 4 C -0.075 4.075 5 C -0.191 4.191 6 C -0.087 4.087 7 N -0.122 5.122 8 H 0.271 0.729 9 C -0.189 4.189 10 C 0.370 3.630 11 O -0.464 6.464 12 N -0.364 5.364 13 C 0.006 3.994 14 C -0.138 4.138 15 C -0.016 4.016 16 C -0.578 4.578 17 H 0.086 0.914 18 C -0.203 4.203 19 N -0.575 5.575 20 Si 0.793 3.207 21 H -0.181 1.181 22 H -0.206 1.206 23 H -0.206 1.206 24 C -0.146 4.146 25 H 0.083 0.917 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.226 0.774 35 H 0.246 0.754 36 H 0.070 0.930 37 H 0.070 0.930 38 H 0.088 0.912 39 H 0.088 0.912 40 H 0.011 0.989 41 H 0.011 0.989 42 H 0.072 0.928 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -25.577 13.841 -6.225 29.741 hybrid contribution 1.634 0.073 0.033 1.636 sum -23.943 13.914 -6.192 28.376 Atomic orbital electron populations 1.21831 0.94545 1.01767 1.02140 1.21077 0.95771 0.96700 0.97646 1.21847 1.01090 0.95346 1.01908 1.20034 0.88242 1.00847 0.98368 1.19609 0.96599 0.95981 1.06922 1.22451 0.81796 1.01219 1.03236 1.41947 1.09621 1.16279 1.44341 0.72911 1.20009 0.94354 0.91837 1.12683 1.17535 0.82447 0.84716 0.78345 1.90810 1.85572 1.25107 1.44875 1.45807 1.04921 1.25290 1.60371 1.21289 0.84934 0.94207 0.98969 1.21599 0.91647 0.99235 1.01366 1.18956 0.92908 0.94689 0.95002 1.21701 0.91900 1.06477 1.37709 0.91411 1.26054 1.03556 0.95644 0.95051 1.70122 1.27135 1.18282 1.41992 0.85342 0.78530 0.78852 0.77957 1.18099 1.20618 1.20616 1.21316 0.90743 1.00229 1.02293 0.91693 0.92800 0.92904 0.93201 0.92896 0.91421 0.93365 0.91834 0.89546 0.77414 0.75356 0.93035 0.93003 0.91194 0.91208 0.98942 0.98917 0.92806 0.85286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 9.19 71.98 0.66 -0.85 16 2 C -0.09 -1.19 2.91 -10.80 -0.03 -1.23 16 3 C -0.14 -1.57 8.91 71.98 0.64 -0.93 16 4 C -0.04 -0.48 5.18 29.85 0.15 -0.32 16 5 C -0.19 -3.17 4.81 -20.12 -0.10 -3.26 16 6 C 0.05 0.62 10.45 83.48 0.87 1.50 16 7 N -0.53 -7.95 5.99 -183.62 -1.10 -9.05 16 8 H 0.43 3.91 8.19 -92.71 -0.76 3.16 16 9 C -0.08 -1.88 7.06 40.35 0.28 -1.59 16 10 C 0.58 18.59 7.79 86.45 0.67 19.27 16 11 O -0.58 -24.18 16.88 -4.34 -0.07 -24.25 16 12 N -0.71 -20.22 5.55 -467.08 -2.59 -22.81 16 13 C 0.13 4.65 5.67 86.38 0.49 5.14 16 14 C -0.10 -3.82 5.27 30.59 0.16 -3.66 16 15 C 0.02 1.15 4.97 29.85 0.15 1.30 16 16 C -0.54 -29.93 9.11 25.60 0.23 -29.70 16 17 H 0.07 3.51 7.74 -2.91 -0.02 3.49 16 18 C -0.01 -0.31 5.46 84.65 0.46 0.15 16 19 N -0.94 -57.15 13.29 21.45 0.28 -56.87 16 20 Si 0.97 43.58 29.54 68.60 2.03 45.61 16 21 H -0.26 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.28 -12.38 7.11 99.48 0.71 -11.68 16 24 C -0.12 -2.89 10.59 22.57 0.24 -2.65 16 25 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 26 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.05 0.56 8.14 -2.38 -0.02 0.54 16 28 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 29 H 0.05 0.63 6.43 -2.39 -0.02 0.62 16 30 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 31 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 33 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 34 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 35 H 0.41 8.35 7.60 -92.70 -0.70 7.65 16 36 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.05 2.02 8.14 -2.38 -0.02 2.00 16 38 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 39 H 0.07 2.45 8.14 -2.38 -0.02 2.43 16 40 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 41 H -0.01 -0.43 8.14 -2.39 -0.02 -0.45 16 42 H 0.26 15.09 8.31 -92.71 -0.77 14.32 16 43 H 0.13 3.44 8.06 -2.91 -0.02 3.42 16 Total: -1.00 -74.12 358.31 2.97 -71.16 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: -0.47 Total: 13.06 kcal Atomic # 6 Polarization: -21.74 SS G_CDS: 4.89 Total: -16.84 kcal Atomic # 7 Polarization: -85.32 SS G_CDS: -3.41 Total: -88.73 kcal Atomic # 8 Polarization: -24.18 SS G_CDS: -0.07 Total: -24.25 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -74.12 2.97 -71.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000412007704.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.009 kcal (2) G-P(sol) polarization free energy of solvation -74.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.147 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds