Wall clock time and date at job start Tue Mar 31 2020 00:19:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47410 * 2 1 4 4 C 1.50696 * 109.47552 * 179.97438 * 3 2 1 5 5 N 1.34664 * 125.79840 * 265.13767 * 4 3 2 6 6 H 0.96992 * 124.85600 * 0.05428 * 5 4 3 7 7 C 1.36448 * 110.29566 * 180.29276 * 5 4 3 8 8 C 1.34493 * 108.85812 * 359.74434 * 7 5 4 9 9 C 1.36768 * 125.80410 * 84.99620 * 4 3 2 10 10 C 1.47263 * 126.93909 * 359.97438 * 9 4 3 11 11 O 1.21623 * 120.00126 * 359.70796 * 10 9 4 12 12 N 1.34777 * 119.99630 * 179.70482 * 10 9 4 13 13 C 1.46499 * 119.99665 * 179.72408 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 C 1.52998 * 109.46876 * 299.99984 * 14 13 12 16 16 C 1.53005 * 109.46795 * 60.00011 * 14 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00513 * 0.02562 * 19 17 14 21 21 Si 1.86809 * 119.99651 * 179.97438 * 19 17 14 22 22 H 1.48493 * 109.47037 * 59.99882 * 21 19 17 23 23 H 1.48501 * 109.46667 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47133 * 299.99829 * 21 19 17 25 25 H 1.09007 * 109.47013 * 59.99687 * 1 2 3 26 26 H 1.08998 * 109.47351 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47248 * 300.00170 * 1 2 3 28 28 H 1.08996 * 109.47248 * 239.99830 * 2 1 3 29 29 H 1.09001 * 109.47107 * 119.99854 * 2 1 3 30 30 H 1.09010 * 109.47329 * 59.99674 * 3 2 1 31 31 H 1.09007 * 109.47288 * 300.00144 * 3 2 1 32 32 H 1.08002 * 125.57355 * 179.72678 * 7 5 4 33 33 H 1.07994 * 126.83369 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 36 36 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 37 37 H 1.08996 * 109.47009 * 60.00253 * 15 14 13 38 38 H 1.09004 * 109.46783 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.47156 * 300.00070 * 15 14 13 40 40 H 1.09000 * 109.47011 * 60.00556 * 16 14 13 41 41 H 1.09004 * 109.46658 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47069 * 299.99740 * 16 14 13 43 43 H 0.96999 * 120.00239 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3343 1.5352 1.0893 6 1 4.0126 1.6122 2.0010 7 6 5.6492 1.5108 0.7259 8 6 5.7285 1.3955 -0.6118 9 6 4.3476 1.3456 -1.1040 10 6 3.9113 1.2222 -2.5051 11 8 2.7252 1.1929 -2.7724 12 7 4.8266 1.1418 -3.4912 13 6 4.3926 1.0129 -4.8845 14 6 5.6193 0.9350 -5.7956 15 6 6.4540 2.2074 -5.6370 16 6 6.4644 -0.2808 -5.4101 17 6 5.1729 0.8031 -7.2290 18 1 4.1196 0.7770 -7.4662 19 6 6.1092 0.7157 -8.2373 20 7 7.3918 0.7470 -7.9483 21 14 5.5558 0.5514 -10.0139 22 1 4.7349 1.7311 -10.3877 23 1 6.7465 0.4759 -10.8982 24 1 4.7462 -0.6839 -10.1681 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 6.4892 1.5741 1.4019 33 1 6.6296 1.3486 -1.2052 34 1 5.7726 1.1648 -3.2781 35 1 3.7979 0.1064 -4.9976 36 1 3.7905 1.8790 -5.1592 37 1 6.7769 2.3032 -4.6004 38 1 7.3282 2.1516 -6.2858 39 1 5.8519 3.0735 -5.9116 40 1 5.8697 -1.1873 -5.5232 41 1 7.3386 -0.3361 -6.0590 42 1 6.7873 -0.1849 -4.3735 43 1 8.0505 0.6859 -8.6577 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000421887683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:34 Heat of formation + Delta-G solvation = -18.831950 kcal Electronic energy + Delta-G solvation = -21948.454084 eV Core-core repulsion = 18800.426311 eV Total energy + Delta-G solvation = -3148.027773 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.19149 -38.58041 -36.18340 -34.92616 -33.07981 -31.25755 -30.34413 -29.89649 -26.28764 -25.63352 -25.45100 -24.78631 -22.14682 -21.46194 -20.58904 -19.12329 -18.56471 -17.67174 -16.04249 -15.52073 -15.04050 -14.82254 -14.80833 -14.48511 -14.02784 -13.98711 -13.21735 -13.12321 -12.91837 -12.76852 -12.56787 -12.50626 -12.07435 -11.78579 -11.29483 -11.28642 -11.22358 -11.09988 -10.78252 -10.67274 -10.62208 -10.29085 -10.13650 -9.53610 -9.38871 -9.11449 -8.78237 -8.70841 -8.35362 -8.24083 -7.97642 -5.95288 -4.05061 1.96989 2.51297 3.15268 3.34583 3.38504 3.42338 4.03838 4.13608 4.47056 4.72424 4.93640 5.03091 5.08985 5.31165 5.33124 5.42757 5.46032 5.65197 5.74289 5.84347 5.93705 6.02741 6.15820 6.31739 6.33905 6.40064 6.45376 6.61559 6.83312 6.90744 6.93131 6.97979 7.08599 7.12126 7.23478 7.44306 7.47599 7.64575 7.76250 8.09412 8.19882 8.37703 8.47339 8.93436 9.01519 9.60229 11.06034 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.003982 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.777907 B = 7029.674873 C = 7855.573526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.112 4.112 3 C -0.055 4.055 4 C 0.099 3.901 5 N -0.555 5.555 6 H 0.412 0.588 7 C -0.023 4.023 8 C -0.167 4.167 9 C -0.223 4.223 10 C 0.578 3.422 11 O -0.561 6.561 12 N -0.712 5.712 13 C 0.134 3.866 14 C 0.055 3.945 15 C -0.130 4.130 16 C -0.130 4.130 17 C -0.504 4.504 18 H 0.056 0.944 19 C 0.066 3.934 20 N -0.887 5.887 21 Si 0.893 3.107 22 H -0.278 1.278 23 H -0.288 1.288 24 H -0.278 1.278 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.048 0.952 28 H 0.074 0.926 29 H 0.051 0.949 30 H 0.062 0.938 31 H 0.104 0.896 32 H 0.167 0.833 33 H 0.145 0.855 34 H 0.397 0.603 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.007 0.993 38 H 0.084 0.916 39 H 0.026 0.974 40 H 0.026 0.974 41 H 0.084 0.916 42 H 0.007 0.993 43 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.347 0.943 19.107 19.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.150 4.150 3 C -0.093 4.093 4 C -0.018 4.018 5 N -0.151 5.151 6 H 0.248 0.752 7 C -0.150 4.150 8 C -0.191 4.191 9 C -0.233 4.233 10 C 0.366 3.634 11 O -0.442 6.442 12 N -0.362 5.362 13 C 0.012 3.988 14 C 0.055 3.945 15 C -0.188 4.188 16 C -0.187 4.187 17 C -0.543 4.543 18 H 0.075 0.925 19 C -0.135 4.135 20 N -0.525 5.525 21 Si 0.721 3.279 22 H -0.203 1.203 23 H -0.214 1.214 24 H -0.203 1.203 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.093 0.907 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.123 0.877 32 H 0.184 0.816 33 H 0.162 0.838 34 H 0.232 0.768 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.026 0.974 38 H 0.103 0.897 39 H 0.045 0.955 40 H 0.045 0.955 41 H 0.103 0.897 42 H 0.026 0.974 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.996 0.922 18.899 19.570 hybrid contribution 0.316 -0.033 -0.417 0.524 sum -4.680 0.889 18.481 19.086 Atomic orbital electron populations 1.21739 0.95572 1.01586 1.01760 1.21403 0.95771 0.95613 1.02254 1.20352 0.86778 0.98514 1.03700 1.20299 0.93323 1.02478 0.85742 1.41546 1.06223 1.58780 1.08523 0.75204 1.21658 0.85556 1.11275 0.96522 1.22113 0.96144 1.07127 0.93741 1.20369 0.92990 1.17052 0.92872 1.17377 0.85659 0.76433 0.83945 1.90691 1.16693 1.52501 1.84352 1.46084 1.09487 1.73063 1.07557 1.21656 0.98830 1.00094 0.78246 1.18353 0.90077 0.92812 0.93295 1.21816 1.02247 0.97402 0.97290 1.21816 1.02241 0.97722 0.96971 1.20965 0.92925 1.50194 0.90216 0.92531 1.24874 0.94894 0.94922 0.98810 1.69800 0.99926 1.50562 1.32239 0.86649 0.77945 0.78698 0.84640 1.20314 1.21386 1.20320 0.92101 0.92796 0.93247 0.90723 0.93001 0.91961 0.87736 0.81604 0.83761 0.76809 0.92906 0.92898 0.97450 0.89695 0.95513 0.95516 0.89704 0.97447 0.93036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.50 9.91 37.16 0.37 -1.13 16 2 C -0.11 -1.31 5.92 -26.73 -0.16 -1.46 16 3 C -0.06 -0.66 5.06 -27.89 -0.14 -0.80 16 4 C 0.10 1.29 6.43 -81.88 -0.53 0.76 16 5 N -0.56 -5.38 5.90 -9.10 -0.05 -5.44 16 6 H 0.41 2.52 8.96 -40.82 -0.37 2.15 16 7 C -0.02 -0.23 11.89 -16.82 -0.20 -0.43 16 8 C -0.17 -2.19 10.56 -37.49 -0.40 -2.58 16 9 C -0.22 -3.51 6.29 -103.35 -0.65 -4.16 16 10 C 0.58 11.07 7.81 -12.59 -0.10 10.97 16 11 O -0.56 -11.99 14.74 5.26 0.08 -11.92 16 12 N -0.71 -13.82 4.95 -61.43 -0.30 -14.12 16 13 C 0.13 3.00 4.50 -4.04 -0.02 2.98 16 14 C 0.06 1.32 0.50 -155.66 -0.08 1.25 16 15 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 16 C -0.13 -3.02 8.08 37.16 0.30 -2.72 16 17 C -0.50 -13.50 8.01 -34.44 -0.28 -13.77 16 18 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 19 C 0.07 1.77 5.15 -17.82 -0.09 1.67 16 20 N -0.89 -23.99 9.35 55.43 0.52 -23.47 16 21 Si 0.89 21.03 29.54 -169.99 -5.02 16.01 16 22 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 1.09 7.95 -51.93 -0.41 0.67 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.56 8.14 -51.92 -0.42 0.14 16 31 H 0.10 1.50 6.76 -51.93 -0.35 1.15 16 32 H 0.17 1.10 8.06 -52.49 -0.42 0.68 16 33 H 0.14 1.74 7.69 -52.49 -0.40 1.34 16 34 H 0.40 7.13 5.29 -40.82 -0.22 6.91 16 35 H 0.05 1.23 8.14 -51.92 -0.42 0.81 16 36 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 38 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 39 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 42 H 0.01 0.14 6.86 -51.93 -0.36 -0.22 16 43 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 LS Contribution 343.90 15.07 5.18 5.18 Total: -1.00 -30.10 343.90 -8.13 -38.23 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: -6.86 Total: 7.70 kcal Atomic # 6 Polarization: -10.50 SS G_CDS: -1.67 Total: -12.17 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.16 Total: -43.04 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: 0.08 Total: -11.92 kcal Atomic # 14 Polarization: 21.03 SS G_CDS: -5.02 Total: 16.01 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -30.10 -8.13 -38.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421887683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.395 kcal (2) G-P(sol) polarization free energy of solvation -30.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.227 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.832 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds