Wall clock time and date at job start Tue Mar 31 2020 00:19:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52997 * 109.47410 * 2 1 4 4 C 1.50696 * 109.47552 * 179.97438 * 3 2 1 5 5 N 1.34664 * 125.79840 * 265.13767 * 4 3 2 6 6 H 0.96992 * 124.85600 * 0.05428 * 5 4 3 7 7 C 1.36448 * 110.29566 * 180.29276 * 5 4 3 8 8 C 1.34493 * 108.85812 * 359.74434 * 7 5 4 9 9 C 1.36768 * 125.80410 * 84.99620 * 4 3 2 10 10 C 1.47263 * 126.93909 * 359.97438 * 9 4 3 11 11 O 1.21623 * 120.00126 * 359.70796 * 10 9 4 12 12 N 1.34777 * 119.99630 * 179.70482 * 10 9 4 13 13 C 1.46499 * 119.99665 * 179.72408 * 12 10 9 14 14 C 1.53004 * 109.47198 * 180.27868 * 13 12 10 15 15 C 1.52998 * 109.46876 * 299.99984 * 14 13 12 16 16 C 1.53005 * 109.46795 * 60.00011 * 14 13 12 17 17 C 1.50700 * 109.47208 * 180.02562 * 14 13 12 18 18 H 1.08002 * 119.99770 * 359.97438 * 17 14 13 19 19 C 1.37876 * 119.99720 * 179.97438 * 17 14 13 20 20 N 1.31514 * 120.00513 * 0.02562 * 19 17 14 21 21 Si 1.86809 * 119.99651 * 179.97438 * 19 17 14 22 22 H 1.48493 * 109.47037 * 59.99882 * 21 19 17 23 23 H 1.48501 * 109.46667 * 180.02562 * 21 19 17 24 24 H 1.48500 * 109.47133 * 299.99829 * 21 19 17 25 25 H 1.09007 * 109.47013 * 59.99687 * 1 2 3 26 26 H 1.08998 * 109.47351 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.47248 * 300.00170 * 1 2 3 28 28 H 1.08996 * 109.47248 * 239.99830 * 2 1 3 29 29 H 1.09001 * 109.47107 * 119.99854 * 2 1 3 30 30 H 1.09010 * 109.47329 * 59.99674 * 3 2 1 31 31 H 1.09007 * 109.47288 * 300.00144 * 3 2 1 32 32 H 1.08002 * 125.57355 * 179.72678 * 7 5 4 33 33 H 1.07994 * 126.83369 * 180.02562 * 8 7 5 34 34 H 0.97001 * 120.00485 * 0.02562 * 12 10 9 35 35 H 1.09009 * 109.47454 * 300.27637 * 13 12 10 36 36 H 1.08998 * 109.47492 * 60.27932 * 13 12 10 37 37 H 1.08996 * 109.47009 * 60.00253 * 15 14 13 38 38 H 1.09004 * 109.46783 * 179.97438 * 15 14 13 39 39 H 1.08998 * 109.47156 * 300.00070 * 15 14 13 40 40 H 1.09000 * 109.47011 * 60.00556 * 16 14 13 41 41 H 1.09004 * 109.46658 * 180.02562 * 16 14 13 42 42 H 1.08996 * 109.47069 * 299.99740 * 16 14 13 43 43 H 0.96999 * 120.00239 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5470 1.4425 0.0006 5 7 4.3343 1.5352 1.0893 6 1 4.0126 1.6122 2.0010 7 6 5.6492 1.5108 0.7259 8 6 5.7285 1.3955 -0.6118 9 6 4.3476 1.3456 -1.1040 10 6 3.9113 1.2222 -2.5051 11 8 2.7252 1.1929 -2.7724 12 7 4.8266 1.1418 -3.4912 13 6 4.3926 1.0129 -4.8845 14 6 5.6193 0.9350 -5.7956 15 6 6.4540 2.2074 -5.6370 16 6 6.4644 -0.2808 -5.4101 17 6 5.1729 0.8031 -7.2290 18 1 4.1196 0.7770 -7.4662 19 6 6.1092 0.7157 -8.2373 20 7 7.3918 0.7470 -7.9483 21 14 5.5558 0.5514 -10.0139 22 1 4.7349 1.7311 -10.3877 23 1 6.7465 0.4759 -10.8982 24 1 4.7462 -0.6839 -10.1681 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 6.4892 1.5741 1.4019 33 1 6.6296 1.3486 -1.2052 34 1 5.7726 1.1648 -3.2781 35 1 3.7979 0.1064 -4.9976 36 1 3.7905 1.8790 -5.1592 37 1 6.7769 2.3032 -4.6004 38 1 7.3282 2.1516 -6.2858 39 1 5.8519 3.0735 -5.9116 40 1 5.8697 -1.1873 -5.5232 41 1 7.3386 -0.3361 -6.0590 42 1 6.7873 -0.1849 -4.3735 43 1 8.0505 0.6859 -8.6577 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000421887683.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:33 Heat of formation + Delta-G solvation = -36.693944 kcal Electronic energy + Delta-G solvation = -21949.228638 eV Core-core repulsion = 18800.426311 eV Total energy + Delta-G solvation = -3148.802327 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.16286 -40.12219 -37.98966 -35.87648 -34.84052 -32.86344 -31.68094 -30.81118 -27.63851 -27.55675 -27.20403 -26.37356 -23.43405 -22.42876 -21.53193 -20.60365 -20.36392 -18.61412 -17.85260 -17.11020 -16.52915 -16.31112 -16.17724 -15.86083 -15.24515 -14.90487 -14.78526 -14.60591 -14.29287 -14.06446 -13.90105 -13.72565 -13.57222 -13.16904 -13.06367 -12.66465 -12.65533 -12.60879 -12.23513 -12.20996 -12.11542 -12.08938 -11.55748 -11.46604 -11.22576 -10.77912 -10.64655 -10.38006 -9.95633 -9.62189 -9.06163 -8.00288 -6.16284 0.82538 1.45467 1.45829 1.53119 1.59950 2.24999 2.46380 2.67561 2.75083 3.22810 3.82077 4.05932 4.14178 4.19462 4.33484 4.44391 4.51183 4.54063 4.60143 4.71858 4.74674 4.85999 4.97255 5.00391 5.04605 5.07096 5.11108 5.17707 5.20772 5.27034 5.39163 5.42051 5.43840 5.67855 5.68035 5.69444 5.83883 6.04393 6.15145 6.22575 6.45031 6.71370 6.87253 6.87853 7.50279 7.51118 8.98699 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025134 B = 0.003982 C = 0.003563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.777907 B = 7029.674873 C = 7855.573526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.108 4.108 3 C -0.054 4.054 4 C 0.103 3.897 5 N -0.535 5.535 6 H 0.434 0.566 7 C 0.005 3.995 8 C -0.195 4.195 9 C -0.266 4.266 10 C 0.572 3.428 11 O -0.594 6.594 12 N -0.710 5.710 13 C 0.152 3.848 14 C 0.051 3.949 15 C -0.118 4.118 16 C -0.118 4.118 17 C -0.530 4.530 18 H 0.044 0.956 19 C 0.029 3.971 20 N -0.899 5.899 21 Si 0.946 3.054 22 H -0.277 1.277 23 H -0.281 1.281 24 H -0.277 1.277 25 H 0.042 0.958 26 H 0.059 0.941 27 H 0.074 0.926 28 H 0.034 0.966 29 H 0.072 0.928 30 H 0.098 0.902 31 H 0.072 0.928 32 H 0.211 0.789 33 H 0.149 0.851 34 H 0.404 0.596 35 H 0.034 0.966 36 H 0.035 0.965 37 H 0.033 0.967 38 H 0.064 0.936 39 H 0.016 0.984 40 H 0.016 0.984 41 H 0.064 0.936 42 H 0.033 0.967 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.818 1.179 21.994 22.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.092 4.092 4 C -0.016 4.016 5 N -0.132 5.132 6 H 0.274 0.726 7 C -0.123 4.123 8 C -0.219 4.219 9 C -0.276 4.276 10 C 0.363 3.637 11 O -0.477 6.477 12 N -0.360 5.360 13 C 0.028 3.972 14 C 0.050 3.950 15 C -0.176 4.176 16 C -0.176 4.176 17 C -0.568 4.568 18 H 0.062 0.938 19 C -0.171 4.171 20 N -0.538 5.538 21 Si 0.773 3.227 22 H -0.202 1.202 23 H -0.207 1.207 24 H -0.203 1.203 25 H 0.061 0.939 26 H 0.078 0.922 27 H 0.093 0.907 28 H 0.053 0.947 29 H 0.091 0.909 30 H 0.117 0.883 31 H 0.091 0.909 32 H 0.228 0.772 33 H 0.166 0.834 34 H 0.241 0.759 35 H 0.053 0.947 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.083 0.917 39 H 0.036 0.964 40 H 0.035 0.965 41 H 0.083 0.917 42 H 0.052 0.948 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -4.450 1.161 21.831 22.310 hybrid contribution 0.139 -0.100 -1.219 1.231 sum -4.311 1.062 20.611 21.084 Atomic orbital electron populations 1.21721 0.94440 1.02120 1.02091 1.21344 0.96776 0.95254 1.01239 1.20328 0.86350 0.98626 1.03898 1.20350 0.93817 1.01340 0.86109 1.41535 1.05864 1.56921 1.08837 0.72605 1.22263 0.86453 1.07600 0.95964 1.22281 0.95053 1.09187 0.95346 1.20252 0.95310 1.20630 0.91390 1.17980 0.85072 0.75293 0.85388 1.90664 1.18028 1.53901 1.85131 1.45912 1.10036 1.73670 1.06393 1.21213 0.97702 0.98382 0.79931 1.18358 0.90722 0.93437 0.92450 1.21648 1.00938 0.96577 0.98441 1.21648 1.00930 0.96923 0.98094 1.21238 0.92531 1.50950 0.92114 0.93802 1.25463 0.95044 0.94673 1.01947 1.69902 1.00374 1.50467 1.33054 0.85800 0.77659 0.78454 0.80790 1.20242 1.20665 1.20268 0.93887 0.92209 0.90748 0.94666 0.90943 0.88318 0.90900 0.77221 0.83361 0.75888 0.94724 0.94668 0.94772 0.91709 0.96440 0.96464 0.91720 0.94775 0.92991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.80 9.91 71.98 0.71 -2.08 16 2 C -0.11 -2.42 5.92 30.59 0.18 -2.24 16 3 C -0.05 -1.22 5.06 29.85 0.15 -1.06 16 4 C 0.10 2.51 6.43 41.78 0.27 2.78 16 5 N -0.53 -8.25 5.90 -182.72 -1.08 -9.33 16 6 H 0.43 3.12 8.96 -92.71 -0.83 2.29 16 7 C 0.00 0.08 11.89 83.12 0.99 1.07 16 8 C -0.19 -4.70 10.56 23.62 0.25 -4.45 16 9 C -0.27 -8.23 6.29 -19.04 -0.12 -8.35 16 10 C 0.57 22.58 7.81 86.62 0.68 23.26 16 11 O -0.59 -26.74 14.74 -4.10 -0.06 -26.80 16 12 N -0.71 -28.14 4.95 -466.51 -2.31 -30.46 16 13 C 0.15 7.03 4.50 86.38 0.39 7.42 16 14 C 0.05 2.49 0.50 -52.93 -0.03 2.47 16 15 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 16 C -0.12 -5.55 8.08 71.98 0.58 -4.97 16 17 C -0.53 -29.10 8.01 25.60 0.21 -28.89 16 18 H 0.04 2.45 7.74 -2.91 -0.02 2.43 16 19 C 0.03 1.54 5.15 84.65 0.44 1.97 16 20 N -0.90 -49.05 9.35 21.45 0.20 -48.85 16 21 Si 0.95 43.54 29.54 68.60 2.03 45.57 16 22 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 25 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.03 1.06 7.95 -2.39 -0.02 1.04 16 29 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 30 H 0.10 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.07 2.15 6.76 -2.38 -0.02 2.13 16 32 H 0.21 1.50 8.06 -2.91 -0.02 1.48 16 33 H 0.15 3.31 7.69 -2.91 -0.02 3.29 16 34 H 0.40 14.48 5.29 -92.71 -0.49 13.99 16 35 H 0.03 1.70 8.14 -2.38 -0.02 1.68 16 36 H 0.03 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.03 1.37 6.86 -2.39 -0.02 1.35 16 38 H 0.06 3.32 6.07 -2.38 -0.01 3.31 16 39 H 0.02 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.06 3.32 6.07 -2.38 -0.01 3.30 16 42 H 0.03 1.37 6.86 -2.39 -0.02 1.35 16 43 H 0.26 13.67 8.31 -92.71 -0.77 12.90 16 Total: -1.00 -67.86 343.90 3.74 -64.12 By element: Atomic # 1 Polarization: 24.11 SS G_CDS: -0.31 Total: 23.80 kcal Atomic # 6 Polarization: -23.33 SS G_CDS: 5.27 Total: -18.06 kcal Atomic # 7 Polarization: -85.44 SS G_CDS: -3.19 Total: -88.63 kcal Atomic # 8 Polarization: -26.74 SS G_CDS: -0.06 Total: -26.80 kcal Atomic # 14 Polarization: 43.54 SS G_CDS: 2.03 Total: 45.57 kcal Total: -67.86 3.74 -64.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000421887683.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.429 kcal (2) G-P(sol) polarization free energy of solvation -67.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds