Wall clock time and date at job start Tue Mar 31 2020 00:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50701 * 109.47040 * 2 1 4 4 N 1.30253 * 125.62171 * 90.02416 * 3 2 1 5 5 C 1.34479 * 108.69956 * 179.97438 * 4 3 2 6 6 C 1.50700 * 126.16580 * 180.02562 * 5 4 3 7 7 C 1.34326 * 107.66887 * 359.97438 * 5 4 3 8 8 C 1.50701 * 126.44316 * 180.02562 * 7 5 4 9 9 N 1.46508 * 109.47181 * 90.00308 * 8 7 5 10 10 C 1.36930 * 119.99793 * 269.99848 * 9 8 7 11 11 H 1.08003 * 119.99805 * 139.45196 * 10 9 8 12 12 C 1.38809 * 120.00379 * 319.46129 * 10 9 8 13 13 N 1.31623 * 120.00084 * 342.02648 * 12 10 9 14 14 Si 1.86802 * 120.00425 * 162.02807 * 12 10 9 15 15 H 1.48503 * 109.47026 * 89.99485 * 14 12 10 16 16 H 1.48491 * 109.47434 * 209.99716 * 14 12 10 17 17 H 1.48500 * 109.46940 * 329.99885 * 14 12 10 18 18 C 1.46499 * 120.00018 * 89.99907 * 9 8 7 19 19 C 1.55235 * 110.46883 * 239.53359 * 18 9 8 20 20 C 1.54888 * 102.58764 * 203.39616 * 19 18 9 21 21 C 1.54266 * 104.31244 * 37.93131 * 20 19 18 22 22 C 1.53867 * 106.59815 * 336.32240 * 21 20 19 23 23 O 1.33976 * 125.61410 * 270.30908 * 3 2 1 24 24 H 1.09002 * 109.46823 * 300.00088 * 1 2 3 25 25 H 1.09001 * 109.47047 * 60.00453 * 1 2 3 26 26 H 1.09001 * 109.46766 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47505 * 239.99655 * 2 1 3 28 28 H 1.09001 * 109.47047 * 119.99546 * 2 1 3 29 29 H 1.08996 * 109.46717 * 269.99900 * 6 5 4 30 30 H 1.08998 * 109.46884 * 29.99415 * 6 5 4 31 31 H 1.08994 * 109.47261 * 149.99830 * 6 5 4 32 32 H 1.08996 * 109.47322 * 330.00265 * 8 7 5 33 33 H 1.08999 * 109.47496 * 210.00057 * 8 7 5 34 34 H 0.96998 * 120.00128 * 180.02562 * 13 12 10 35 35 H 1.09009 * 110.43308 * 2.18535 * 18 9 8 36 36 H 1.09001 * 110.89480 * 85.10167 * 19 18 9 37 37 H 1.08996 * 110.76697 * 321.62665 * 19 18 9 38 38 H 1.09008 * 110.48688 * 279.18712 * 20 19 18 39 39 H 1.08994 * 110.48404 * 156.67981 * 20 19 18 40 40 H 1.08995 * 110.02819 * 95.61182 * 21 20 19 41 41 H 1.09002 * 110.02841 * 216.98791 * 21 20 19 42 42 H 1.09005 * 110.03336 * 119.28728 * 22 21 20 43 43 H 1.09002 * 110.03271 * 240.66259 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2856 2.1359 1.0588 5 6 2.7149 3.3488 0.6674 6 6 3.1175 4.4844 1.5725 7 6 2.7210 3.3652 -0.6758 8 6 3.1300 4.5187 -1.5551 9 7 4.5645 4.4312 -1.8398 10 6 5.4657 5.0426 -1.0097 11 1 6.3901 4.5450 -0.7560 12 6 5.1912 6.3018 -0.4942 13 7 4.2692 7.0558 -1.0546 14 14 6.1303 6.9266 0.9948 15 1 7.3475 7.6488 0.5452 16 1 5.2663 7.8499 1.7734 17 1 6.5238 5.7778 1.8496 18 6 5.0346 3.6896 -3.0124 19 6 5.9791 2.5352 -2.5819 20 6 6.8160 2.2887 -3.8617 21 6 7.0493 3.6988 -4.4423 22 6 5.9167 4.5894 -3.9023 23 8 2.2869 2.1583 -1.0892 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 2.2459 5.1012 1.7912 30 1 3.5209 4.0827 2.5020 31 1 3.8770 5.0907 1.0788 32 1 2.9175 5.4579 -1.0445 33 1 2.5710 4.4789 -2.4900 34 1 4.0777 7.9359 -0.6946 35 1 4.1896 3.3014 -3.5812 36 1 5.4089 1.6452 -2.3157 37 1 6.6187 2.8468 -1.7562 38 1 6.2599 1.6724 -4.5683 39 1 7.7661 1.8172 -3.6111 40 1 8.0151 4.0826 -4.1138 41 1 7.0120 3.6650 -5.5311 42 1 6.3328 5.4056 -3.3117 43 1 5.3294 4.9889 -4.7291 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428239938.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:08 Heat of formation + Delta-G solvation = 0.798277 kcal Electronic energy + Delta-G solvation = -22991.588148 eV Core-core repulsion = 19844.411605 eV Total energy + Delta-G solvation = -3147.176542 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.10549 -39.33656 -36.55245 -35.92010 -34.92383 -33.19223 -31.71423 -29.50427 -29.37669 -28.12001 -26.89007 -25.06358 -23.59320 -22.31831 -21.35999 -21.25904 -20.76993 -18.49024 -17.55119 -17.26170 -17.11141 -16.51001 -16.04714 -15.67380 -15.42282 -15.03015 -14.76287 -14.38871 -14.17169 -14.07242 -13.93388 -13.48421 -13.30385 -13.01724 -12.95678 -12.73014 -12.63881 -12.44511 -12.26814 -12.04954 -11.98124 -11.93850 -11.84823 -11.79948 -11.72973 -11.36535 -11.26208 -11.11980 -10.50583 -9.32131 -8.56150 -7.89242 -5.50927 0.67005 1.40880 1.47651 1.54218 1.78424 1.93738 2.47442 3.14535 3.26194 3.59505 3.95001 3.98197 4.04837 4.13551 4.21856 4.26996 4.29298 4.39361 4.59497 4.62742 4.72172 4.73187 4.79368 4.87743 4.88375 4.94370 4.96288 5.05312 5.08257 5.12174 5.14607 5.22991 5.27717 5.30182 5.34607 5.46194 5.49806 5.61200 5.64517 5.66246 5.78009 6.48228 6.93273 7.12200 7.75744 8.33717 9.10742 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013164 B = 0.007884 C = 0.005517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2126.527015 B = 3550.670215 C = 5073.628807 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.019 4.019 3 C 0.164 3.836 4 N -0.507 5.507 5 C -0.038 4.038 6 C -0.072 4.072 7 C -0.045 4.045 8 C 0.227 3.773 9 N -0.572 5.572 10 C -0.251 4.251 11 H 0.048 0.952 12 C -0.007 4.007 13 N -0.907 5.907 14 Si 0.927 3.073 15 H -0.285 1.285 16 H -0.281 1.281 17 H -0.275 1.275 18 C 0.162 3.838 19 C -0.128 4.128 20 C -0.111 4.111 21 C -0.113 4.113 22 C -0.125 4.125 23 O -0.215 6.215 24 H 0.049 0.951 25 H 0.051 0.949 26 H 0.101 0.899 27 H 0.108 0.892 28 H 0.112 0.888 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.080 0.920 32 H 0.109 0.891 33 H 0.045 0.955 34 H 0.257 0.743 35 H 0.056 0.944 36 H 0.044 0.956 37 H 0.046 0.954 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.055 0.945 41 H 0.075 0.925 42 H 0.049 0.951 43 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.989 -11.175 -2.606 11.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.057 4.057 3 C -0.044 4.044 4 N -0.238 5.238 5 C -0.157 4.157 6 C -0.129 4.129 7 C -0.101 4.101 8 C 0.099 3.901 9 N -0.290 5.290 10 C -0.381 4.381 11 H 0.065 0.935 12 C -0.205 4.205 13 N -0.550 5.550 14 Si 0.754 3.246 15 H -0.212 1.212 16 H -0.207 1.207 17 H -0.200 1.200 18 C 0.056 3.944 19 C -0.167 4.167 20 C -0.149 4.149 21 C -0.151 4.151 22 C -0.164 4.164 23 O -0.102 6.102 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.120 0.880 27 H 0.126 0.874 28 H 0.130 0.870 29 H 0.088 0.912 30 H 0.085 0.915 31 H 0.099 0.901 32 H 0.126 0.874 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.065 0.935 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.094 0.906 42 H 0.068 0.932 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.110 -11.187 -2.022 11.786 hybrid contribution 0.564 1.095 0.391 1.292 sum -2.547 -10.092 -1.631 10.535 Atomic orbital electron populations 1.21743 0.92108 1.04189 1.01889 1.20248 0.97549 0.81840 1.06085 1.27151 1.00453 0.98140 0.78617 1.70190 1.18006 1.03970 1.31585 1.21485 1.06275 0.94940 0.92996 1.20167 1.01722 0.93600 0.97407 1.25519 1.01214 0.86728 0.96652 1.19514 0.85079 0.90733 0.94797 1.43933 1.00673 1.59005 1.25384 1.18819 1.00930 0.96257 1.22089 0.93488 1.25576 0.98915 0.95226 1.00802 1.69978 1.35366 1.09578 1.40057 0.85962 0.78852 0.78337 0.81403 1.21161 1.20687 1.19959 1.21581 0.94572 0.91159 0.87129 1.22793 0.98339 0.97647 0.97969 1.22236 0.99682 0.96834 0.96134 1.22021 0.97806 0.94986 1.00257 1.22359 0.97175 0.98879 0.97998 1.84382 1.64364 1.23281 1.38219 0.93211 0.92948 0.87996 0.87391 0.86968 0.91220 0.91547 0.90127 0.87409 0.93621 0.93327 0.92625 0.93734 0.93523 0.90643 0.91147 0.92577 0.90613 0.93227 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.69 9.89 71.98 0.71 -1.98 16 2 C -0.02 -0.44 6.56 29.85 0.20 -0.25 16 3 C 0.16 5.93 7.60 88.34 0.67 6.60 16 4 N -0.51 -21.12 11.29 -291.97 -3.30 -24.42 16 5 C -0.04 -1.69 7.11 41.26 0.29 -1.40 16 6 C -0.07 -3.07 10.05 71.24 0.72 -2.36 16 7 C -0.05 -2.05 6.97 24.79 0.17 -1.88 16 8 C 0.23 10.66 5.43 85.63 0.46 11.13 16 9 N -0.57 -27.28 2.43 -675.70 -1.64 -28.92 16 10 C -0.25 -12.89 7.18 84.03 0.60 -12.29 16 11 H 0.05 2.53 6.68 -2.91 -0.02 2.51 16 12 C -0.01 -0.34 3.53 84.86 0.30 -0.04 16 13 N -0.91 -48.52 11.47 21.65 0.25 -48.27 16 14 Si 0.93 42.23 28.41 68.60 1.95 44.18 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 16 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 17 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 18 C 0.16 6.68 3.40 46.19 0.16 6.84 16 19 C -0.13 -4.80 6.47 32.01 0.21 -4.59 16 20 C -0.11 -3.22 6.82 31.67 0.22 -3.01 16 21 C -0.11 -3.43 6.80 31.32 0.21 -3.22 16 22 C -0.12 -4.85 6.41 31.31 0.20 -4.65 16 23 O -0.22 -8.84 10.78 -3.81 -0.04 -8.88 16 24 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 25 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 28 H 0.11 2.27 8.14 -2.39 -0.02 2.25 16 29 H 0.07 2.73 8.14 -2.39 -0.02 2.72 16 30 H 0.07 2.65 8.14 -2.39 -0.02 2.63 16 31 H 0.08 3.78 3.94 -2.39 -0.01 3.77 16 32 H 0.11 5.55 5.26 -2.39 -0.01 5.53 16 33 H 0.05 2.05 7.93 -2.39 -0.02 2.04 16 34 H 0.26 13.37 8.31 -92.71 -0.77 12.60 16 35 H 0.06 2.23 7.84 -2.38 -0.02 2.21 16 36 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 37 H 0.05 1.97 6.59 -2.39 -0.02 1.95 16 38 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 39 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 42 H 0.05 2.28 6.94 -2.38 -0.02 2.27 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -60.09 339.24 3.33 -56.76 By element: Atomic # 1 Polarization: 19.64 SS G_CDS: 0.99 Total: 20.63 kcal Atomic # 6 Polarization: -16.20 SS G_CDS: 5.12 Total: -11.08 kcal Atomic # 7 Polarization: -96.92 SS G_CDS: -4.69 Total: -101.61 kcal Atomic # 8 Polarization: -8.84 SS G_CDS: -0.04 Total: -8.88 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 1.95 Total: 44.18 kcal Total: -60.09 3.33 -56.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428239938.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.560 kcal (2) G-P(sol) polarization free energy of solvation -60.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.761 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds