Wall clock time and date at job start Tue Mar 31 2020 00:16:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46778 * 2 1 4 4 N 1.30259 * 125.61938 * 89.97883 * 3 2 1 5 5 C 1.34478 * 108.69735 * 179.77413 * 4 3 2 6 6 C 1.50700 * 126.16683 * 180.26374 * 5 4 3 7 7 C 1.34332 * 107.67154 * 0.39076 * 5 4 3 8 8 C 1.50700 * 126.44692 * 179.87339 * 7 5 4 9 9 N 1.46902 * 109.46896 * 89.71182 * 8 7 5 10 10 C 1.46899 * 110.99784 * 189.99910 * 9 8 7 11 11 C 1.50705 * 109.46971 * 75.57110 * 10 9 8 12 12 H 1.07999 * 119.99620 * 355.62625 * 11 10 9 13 13 C 1.37870 * 119.99937 * 175.62089 * 11 10 9 14 14 N 1.31515 * 120.00053 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99880 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47333 * 60.00280 * 15 13 11 17 17 H 1.48502 * 109.47039 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47129 * 300.00404 * 15 13 11 19 19 C 1.46901 * 110.99605 * 66.04967 * 9 8 7 20 20 C 1.53011 * 109.46956 * 195.64846 * 19 9 8 21 21 C 1.52998 * 117.49897 * 244.11074 * 20 19 9 22 22 C 1.52995 * 117.49633 * 175.44927 * 20 19 9 23 23 O 1.33970 * 125.61849 * 269.99417 * 3 2 1 24 24 H 1.08998 * 109.47307 * 60.00238 * 1 2 3 25 25 H 1.09003 * 109.47024 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46938 * 299.99682 * 1 2 3 27 27 H 1.08996 * 109.47279 * 239.99943 * 2 1 3 28 28 H 1.09008 * 109.47399 * 119.99681 * 2 1 3 29 29 H 1.08999 * 109.47309 * 270.15007 * 6 5 4 30 30 H 1.09003 * 109.46388 * 30.15075 * 6 5 4 31 31 H 1.09000 * 109.47344 * 150.14411 * 6 5 4 32 32 H 1.09004 * 109.46954 * 329.71592 * 8 7 5 33 33 H 1.09002 * 109.47265 * 209.71530 * 8 7 5 34 34 H 1.09003 * 109.46669 * 195.56604 * 10 9 8 35 35 H 1.09000 * 109.47306 * 315.57084 * 10 9 8 36 36 H 0.96998 * 119.99830 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.47326 * 315.64440 * 19 9 8 38 38 H 1.09000 * 109.47495 * 75.64918 * 19 9 8 39 39 H 1.08997 * 115.54209 * 29.77573 * 20 19 9 40 40 H 1.09007 * 117.49828 * 359.97438 * 21 20 19 41 41 H 1.08997 * 117.50293 * 145.01622 * 21 20 19 42 42 H 1.09002 * 117.49784 * 214.97329 * 22 20 19 43 43 H 1.08994 * 117.50619 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2847 2.1363 1.0589 5 6 2.7183 3.3475 0.6675 6 6 3.1265 4.4812 1.5725 7 6 2.7194 3.3658 -0.6757 8 6 3.1275 4.5196 -1.5550 9 7 4.5660 4.4328 -1.8404 10 6 5.0481 5.6577 -2.4924 11 6 5.1636 6.7589 -1.4699 12 1 4.8383 6.5889 -0.4542 13 6 5.6847 7.9831 -1.8312 14 7 6.0805 8.1902 -3.0682 15 14 5.8272 9.3482 -0.5641 16 1 6.7017 8.9007 0.5494 17 1 6.4138 10.5550 -1.2004 18 1 4.4789 9.6744 -0.0341 19 6 4.8706 3.2484 -2.6542 20 6 6.3744 2.9698 -2.6064 21 6 7.1563 3.0861 -3.9164 22 6 6.8818 1.7085 -3.3080 23 8 2.2923 2.1565 -1.0891 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.2571 5.0999 1.7947 30 1 3.5318 4.0774 2.5003 31 1 3.8861 5.0862 1.0773 32 1 2.9145 5.4588 -1.0443 33 1 2.5685 4.4795 -2.4900 34 1 6.0254 5.4716 -2.9378 35 1 4.3451 5.9563 -3.2700 36 1 6.4468 9.0516 -3.3224 37 1 4.3291 2.3881 -2.2607 38 1 4.5670 3.4282 -3.6855 39 1 6.8798 3.2740 -1.6899 40 1 6.5994 3.3605 -4.8123 41 1 8.1764 3.4662 -3.8616 42 1 7.7215 1.1829 -2.8533 43 1 6.1444 1.0768 -3.8033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000428243059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:31 Heat of formation + Delta-G solvation = 35.568344 kcal Electronic energy + Delta-G solvation = -22176.103132 eV Core-core repulsion = 19030.434333 eV Total energy + Delta-G solvation = -3145.668799 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.02227 -37.85157 -35.67228 -34.82815 -34.11820 -32.57867 -30.74742 -28.23094 -27.65080 -25.95908 -24.35993 -22.98794 -21.97744 -21.26098 -21.15687 -20.10011 -19.56781 -16.71080 -16.33976 -16.25473 -15.50094 -14.91684 -14.65832 -14.63835 -14.09257 -13.83236 -13.77325 -13.08729 -12.91291 -12.73582 -12.46292 -12.28625 -12.03687 -11.91018 -11.67782 -11.53145 -11.32501 -11.20881 -11.18292 -10.81848 -10.74194 -10.68607 -10.55137 -10.20498 -9.97797 -9.87880 -9.42749 -9.24414 -8.44953 -8.17481 -7.39790 -6.04625 -4.06571 1.76962 2.91587 2.99212 3.32274 3.36949 3.39439 4.16189 4.20173 4.40553 4.78394 4.86795 5.00581 5.10390 5.23725 5.25166 5.31106 5.33188 5.34794 5.53652 5.57783 5.65432 5.72428 5.88901 5.93197 5.94030 6.00215 6.01349 6.07344 6.17420 6.21436 6.27000 6.31446 6.41510 6.45865 6.48698 6.76377 6.77628 7.15622 7.27889 7.76551 8.01822 8.08304 8.10414 8.45856 9.00000 9.57720 11.05691 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.005541 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.043453 B = 5052.169416 C = 6456.045988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.021 4.021 3 C 0.171 3.829 4 N -0.480 5.480 5 C -0.003 4.003 6 C -0.072 4.072 7 C -0.024 4.024 8 C 0.146 3.854 9 N -0.527 5.527 10 C 0.193 3.807 11 C -0.508 4.508 12 H 0.063 0.937 13 C 0.058 3.942 14 N -0.897 5.897 15 Si 0.895 3.105 16 H -0.276 1.276 17 H -0.289 1.289 18 H -0.277 1.277 19 C 0.085 3.915 20 C -0.128 4.128 21 C -0.176 4.176 22 C -0.190 4.190 23 O -0.205 6.205 24 H 0.058 0.942 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.088 0.912 28 H 0.101 0.899 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.116 0.884 33 H 0.038 0.962 34 H 0.045 0.955 35 H -0.010 1.010 36 H 0.262 0.738 37 H 0.062 0.938 38 H 0.026 0.974 39 H 0.111 0.889 40 H 0.089 0.911 41 H 0.091 0.909 42 H 0.088 0.912 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.741 -13.929 2.790 15.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.059 4.059 3 C -0.036 4.036 4 N -0.210 5.210 5 C -0.123 4.123 6 C -0.129 4.129 7 C -0.077 4.077 8 C 0.018 3.982 9 N -0.252 5.252 10 C 0.069 3.931 11 C -0.547 4.547 12 H 0.081 0.919 13 C -0.144 4.144 14 N -0.536 5.536 15 Si 0.723 3.277 16 H -0.201 1.201 17 H -0.214 1.214 18 H -0.202 1.202 19 C -0.043 4.043 20 C -0.146 4.146 21 C -0.213 4.213 22 C -0.227 4.227 23 O -0.092 6.092 24 H 0.077 0.923 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.107 0.893 28 H 0.119 0.881 29 H 0.085 0.915 30 H 0.087 0.913 31 H 0.110 0.890 32 H 0.134 0.866 33 H 0.056 0.944 34 H 0.063 0.937 35 H 0.008 0.992 36 H 0.071 0.929 37 H 0.080 0.920 38 H 0.045 0.955 39 H 0.130 0.870 40 H 0.108 0.892 41 H 0.109 0.891 42 H 0.107 0.893 43 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.489 -14.034 3.667 15.890 hybrid contribution -0.117 1.112 -0.910 1.442 sum -6.606 -12.922 2.757 14.772 Atomic orbital electron populations 1.21772 0.93518 1.02509 1.02895 1.19938 0.96499 0.84811 1.04691 1.25998 1.01689 0.96708 0.79179 1.70274 1.16532 1.03857 1.30382 1.21426 1.04136 0.94447 0.92315 1.20160 1.01751 0.93331 0.97707 1.23524 1.03111 0.85697 0.95376 1.20502 0.90199 0.91615 0.95895 1.62162 1.11318 1.04536 1.47169 1.19818 0.95655 0.84334 0.93299 1.21107 1.41327 0.95712 0.96545 0.91857 1.24956 0.95479 0.98600 0.95324 1.69943 1.42534 1.24064 1.17104 0.86604 0.78427 0.81163 0.81497 1.20128 1.21431 1.20225 1.21629 0.93561 0.93938 0.95216 1.22207 0.95540 0.99928 0.96965 1.22975 1.01578 0.99244 0.97543 1.22940 1.03236 0.91133 1.05398 1.84371 1.64292 1.22906 1.37597 0.92256 0.91247 0.91863 0.89311 0.88062 0.91458 0.91341 0.89006 0.86595 0.94365 0.93716 0.99216 0.92866 0.92006 0.95539 0.87049 0.89211 0.89068 0.89322 0.89546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.02 -0.22 6.56 -27.88 -0.18 -0.40 16 3 C 0.17 2.62 7.60 -12.94 -0.10 2.52 16 4 N -0.48 -8.31 11.29 -7.35 -0.08 -8.39 16 5 C 0.00 -0.05 7.11 -82.81 -0.59 -0.64 16 6 C -0.07 -1.16 10.05 36.01 0.36 -0.80 16 7 C -0.02 -0.44 5.97 -35.69 -0.21 -0.65 16 8 C 0.15 2.80 4.95 -4.98 -0.02 2.77 16 9 N -0.53 -11.04 4.38 -237.50 -1.04 -12.08 16 10 C 0.19 4.79 4.59 -4.97 -0.02 4.76 16 11 C -0.51 -13.53 8.60 -34.44 -0.30 -13.82 16 12 H 0.06 1.64 7.46 -52.49 -0.39 1.25 16 13 C 0.06 1.58 5.46 -17.82 -0.10 1.49 16 14 N -0.90 -25.83 13.29 55.43 0.74 -25.09 16 15 Si 0.90 20.99 29.54 -169.99 -5.02 15.97 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 18 H -0.28 -6.35 7.11 56.52 0.40 -5.94 16 19 C 0.08 1.59 5.11 -3.82 -0.02 1.57 16 20 C -0.13 -2.26 4.96 -90.62 -0.45 -2.71 16 21 C -0.18 -2.86 9.98 -26.69 -0.27 -3.13 16 22 C -0.19 -2.74 10.25 -26.69 -0.27 -3.01 16 23 O -0.20 -3.50 9.82 5.36 0.05 -3.45 16 24 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.09 0.76 8.14 -51.93 -0.42 0.33 16 28 H 0.10 0.91 8.14 -51.92 -0.42 0.48 16 29 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 30 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 31 H 0.09 1.60 7.60 -51.93 -0.39 1.20 16 32 H 0.12 2.27 6.98 -51.93 -0.36 1.91 16 33 H 0.04 0.71 8.12 -51.93 -0.42 0.29 16 34 H 0.04 1.19 6.94 -51.93 -0.36 0.83 16 35 H -0.01 -0.26 8.00 -51.93 -0.42 -0.68 16 36 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 37 H 0.06 1.13 6.18 -51.93 -0.32 0.81 16 38 H 0.03 0.50 7.79 -51.93 -0.40 0.10 16 39 H 0.11 2.15 8.14 -51.93 -0.42 1.72 16 40 H 0.09 1.46 8.03 -51.93 -0.42 1.04 16 41 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.09 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 1.16 8.14 -51.93 -0.42 0.73 16 LS Contribution 355.69 15.07 5.36 5.36 Total: -1.00 -29.82 355.69 -9.07 -38.89 By element: Atomic # 1 Polarization: 9.03 SS G_CDS: -7.27 Total: 1.75 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: -1.80 Total: -12.97 kcal Atomic # 7 Polarization: -45.18 SS G_CDS: -0.39 Total: -45.57 kcal Atomic # 8 Polarization: -3.50 SS G_CDS: 0.05 Total: -3.45 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.02 Total: 15.97 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -29.82 -9.07 -38.89 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428243059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.461 kcal (2) G-P(sol) polarization free energy of solvation -29.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.893 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds