Wall clock time and date at job start Tue Mar 31 2020 00:16:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50704 * 109.46778 * 2 1 4 4 N 1.30259 * 125.61938 * 89.97883 * 3 2 1 5 5 C 1.34478 * 108.69735 * 179.77413 * 4 3 2 6 6 C 1.50700 * 126.16683 * 180.26374 * 5 4 3 7 7 C 1.34332 * 107.67154 * 0.39076 * 5 4 3 8 8 C 1.50700 * 126.44692 * 179.87339 * 7 5 4 9 9 N 1.46902 * 109.46896 * 89.71182 * 8 7 5 10 10 C 1.46899 * 110.99784 * 189.99910 * 9 8 7 11 11 C 1.50705 * 109.46971 * 75.57110 * 10 9 8 12 12 H 1.07999 * 119.99620 * 355.62625 * 11 10 9 13 13 C 1.37870 * 119.99937 * 175.62089 * 11 10 9 14 14 N 1.31515 * 120.00053 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99880 * 179.97438 * 13 11 10 16 16 H 1.48490 * 109.47333 * 60.00280 * 15 13 11 17 17 H 1.48502 * 109.47039 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.47129 * 300.00404 * 15 13 11 19 19 C 1.46901 * 110.99605 * 66.04967 * 9 8 7 20 20 C 1.53011 * 109.46956 * 195.64846 * 19 9 8 21 21 C 1.52998 * 117.49897 * 244.11074 * 20 19 9 22 22 C 1.52995 * 117.49633 * 175.44927 * 20 19 9 23 23 O 1.33970 * 125.61849 * 269.99417 * 3 2 1 24 24 H 1.08998 * 109.47307 * 60.00238 * 1 2 3 25 25 H 1.09003 * 109.47024 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46938 * 299.99682 * 1 2 3 27 27 H 1.08996 * 109.47279 * 239.99943 * 2 1 3 28 28 H 1.09008 * 109.47399 * 119.99681 * 2 1 3 29 29 H 1.08999 * 109.47309 * 270.15007 * 6 5 4 30 30 H 1.09003 * 109.46388 * 30.15075 * 6 5 4 31 31 H 1.09000 * 109.47344 * 150.14411 * 6 5 4 32 32 H 1.09004 * 109.46954 * 329.71592 * 8 7 5 33 33 H 1.09002 * 109.47265 * 209.71530 * 8 7 5 34 34 H 1.09003 * 109.46669 * 195.56604 * 10 9 8 35 35 H 1.09000 * 109.47306 * 315.57084 * 10 9 8 36 36 H 0.96998 * 119.99830 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.47326 * 315.64440 * 19 9 8 38 38 H 1.09000 * 109.47495 * 75.64918 * 19 9 8 39 39 H 1.08997 * 115.54209 * 29.77573 * 20 19 9 40 40 H 1.09007 * 117.49828 * 359.97438 * 21 20 19 41 41 H 1.08997 * 117.50293 * 145.01622 * 21 20 19 42 42 H 1.09002 * 117.49784 * 214.97329 * 22 20 19 43 43 H 1.08994 * 117.50619 * 359.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0322 1.4209 0.0000 4 7 2.2847 2.1363 1.0589 5 6 2.7183 3.3475 0.6675 6 6 3.1265 4.4812 1.5725 7 6 2.7194 3.3658 -0.6757 8 6 3.1275 4.5196 -1.5550 9 7 4.5660 4.4328 -1.8404 10 6 5.0481 5.6577 -2.4924 11 6 5.1636 6.7589 -1.4699 12 1 4.8383 6.5889 -0.4542 13 6 5.6847 7.9831 -1.8312 14 7 6.0805 8.1902 -3.0682 15 14 5.8272 9.3482 -0.5641 16 1 6.7017 8.9007 0.5494 17 1 6.4138 10.5550 -1.2004 18 1 4.4789 9.6744 -0.0341 19 6 4.8706 3.2484 -2.6542 20 6 6.3744 2.9698 -2.6064 21 6 7.1563 3.0861 -3.9164 22 6 6.8818 1.7085 -3.3080 23 8 2.2923 2.1565 -1.0891 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8899 28 1 1.8934 -0.5138 0.8901 29 1 2.2571 5.0999 1.7947 30 1 3.5318 4.0774 2.5003 31 1 3.8861 5.0862 1.0773 32 1 2.9145 5.4588 -1.0443 33 1 2.5685 4.4795 -2.4900 34 1 6.0254 5.4716 -2.9378 35 1 4.3451 5.9563 -3.2700 36 1 6.4468 9.0516 -3.3224 37 1 4.3291 2.3881 -2.2607 38 1 4.5670 3.4282 -3.6855 39 1 6.8798 3.2740 -1.6899 40 1 6.5994 3.3605 -4.8123 41 1 8.1764 3.4662 -3.8616 42 1 7.7215 1.1829 -2.8533 43 1 6.1444 1.0768 -3.8033 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000428243059.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:30 Heat of formation + Delta-G solvation = 16.817913 kcal Electronic energy + Delta-G solvation = -22176.916212 eV Core-core repulsion = 19030.434333 eV Total energy + Delta-G solvation = -3146.481879 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -44.33189 -39.37196 -37.14629 -36.13233 -35.18925 -34.53311 -32.02416 -29.86554 -29.31656 -27.25445 -25.89293 -24.38181 -23.21811 -22.83247 -22.46667 -21.37845 -21.08039 -18.55668 -17.83162 -17.65176 -16.97550 -16.49488 -16.14818 -15.76894 -15.54996 -15.27885 -15.01593 -14.46371 -14.20720 -14.11878 -13.85820 -13.65562 -13.52651 -13.24300 -13.16871 -12.98756 -12.61814 -12.55622 -12.54398 -12.38606 -12.28121 -12.06125 -11.92170 -11.82902 -11.49103 -11.41620 -11.14154 -10.77390 -10.54003 -9.54087 -9.12341 -8.15027 -6.24169 0.45284 1.45123 1.47229 1.54506 1.63172 1.71093 2.43734 2.88162 3.03542 3.17191 3.26884 3.72810 3.87769 3.95674 4.00127 4.08402 4.16392 4.26397 4.27420 4.42949 4.44687 4.56247 4.61942 4.72387 4.74347 4.75176 4.77308 4.90390 4.95705 4.98030 5.02495 5.09898 5.14574 5.18152 5.23243 5.26977 5.30246 5.37759 5.50153 5.72159 6.07906 6.25354 6.53604 6.77651 6.89955 7.44800 8.95287 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014882 B = 0.005541 C = 0.004336 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1881.043453 B = 5052.169416 C = 6456.045988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.023 4.023 3 C 0.186 3.814 4 N -0.504 5.504 5 C -0.008 4.008 6 C -0.069 4.069 7 C -0.046 4.046 8 C 0.153 3.847 9 N -0.531 5.531 10 C 0.212 3.788 11 C -0.518 4.518 12 H 0.067 0.933 13 C 0.007 3.993 14 N -0.933 5.933 15 Si 0.961 3.039 16 H -0.270 1.270 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.092 3.908 20 C -0.156 4.156 21 C -0.184 4.184 22 C -0.153 4.153 23 O -0.212 6.212 24 H 0.051 0.949 25 H 0.100 0.900 26 H 0.051 0.949 27 H 0.111 0.889 28 H 0.118 0.882 29 H 0.083 0.917 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.106 0.894 33 H 0.038 0.962 34 H 0.021 0.979 35 H -0.037 1.037 36 H 0.263 0.737 37 H 0.069 0.931 38 H 0.021 0.979 39 H 0.091 0.909 40 H 0.085 0.915 41 H 0.092 0.908 42 H 0.109 0.891 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.315 -15.777 3.826 17.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.061 4.061 3 C -0.021 4.021 4 N -0.234 5.234 5 C -0.128 4.128 6 C -0.126 4.126 7 C -0.098 4.098 8 C 0.025 3.975 9 N -0.256 5.256 10 C 0.086 3.914 11 C -0.557 4.557 12 H 0.085 0.915 13 C -0.191 4.191 14 N -0.573 5.573 15 Si 0.786 3.214 16 H -0.195 1.195 17 H -0.213 1.213 18 H -0.190 1.190 19 C -0.036 4.036 20 C -0.174 4.174 21 C -0.221 4.221 22 C -0.190 4.190 23 O -0.100 6.100 24 H 0.070 0.930 25 H 0.119 0.881 26 H 0.070 0.930 27 H 0.129 0.871 28 H 0.136 0.864 29 H 0.102 0.898 30 H 0.097 0.903 31 H 0.092 0.908 32 H 0.124 0.876 33 H 0.056 0.944 34 H 0.039 0.961 35 H -0.019 1.019 36 H 0.071 0.929 37 H 0.087 0.913 38 H 0.039 0.961 39 H 0.109 0.891 40 H 0.104 0.896 41 H 0.110 0.890 42 H 0.128 0.872 43 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -7.073 -15.895 4.721 18.027 hybrid contribution 0.009 1.556 -1.230 1.984 sum -7.064 -14.339 3.491 16.361 Atomic orbital electron populations 1.21758 0.92147 1.04294 1.01991 1.20341 0.97488 0.81709 1.06581 1.27217 0.98830 0.97851 0.78181 1.70324 1.18085 1.03855 1.31181 1.21729 1.03439 0.95138 0.92461 1.20148 1.01915 0.92953 0.97576 1.23127 1.05321 0.86170 0.95202 1.20297 0.89017 0.92154 0.96027 1.62084 1.12704 1.03766 1.47015 1.19419 0.93834 0.85754 0.92347 1.21428 1.40890 0.96393 0.96950 0.91517 1.25796 0.95105 1.01057 0.97167 1.70073 1.43533 1.24686 1.19050 0.85554 0.78852 0.77973 0.78982 1.19508 1.21314 1.19045 1.21600 0.94565 0.93000 0.94445 1.22119 0.94728 1.03693 0.96901 1.23001 1.01275 1.01329 0.96540 1.23035 1.03375 0.89899 1.02687 1.84363 1.64583 1.22668 1.38365 0.92975 0.88124 0.92957 0.87108 0.86408 0.89849 0.90325 0.90813 0.87598 0.94378 0.96081 1.01890 0.92865 0.91293 0.96094 0.89100 0.89639 0.88990 0.87227 0.87815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.06 9.89 71.98 0.71 -1.35 16 2 C -0.02 -0.40 6.56 29.85 0.20 -0.21 16 3 C 0.19 5.38 7.60 88.34 0.67 6.05 16 4 N -0.50 -16.84 11.29 -291.97 -3.30 -20.14 16 5 C -0.01 -0.29 7.11 41.26 0.29 0.01 16 6 C -0.07 -2.18 10.05 71.24 0.72 -1.47 16 7 C -0.05 -1.66 5.97 24.79 0.15 -1.51 16 8 C 0.15 6.03 4.95 85.56 0.42 6.45 16 9 N -0.53 -22.99 4.38 -905.31 -3.96 -26.95 16 10 C 0.21 10.96 4.59 85.56 0.39 11.35 16 11 C -0.52 -28.27 8.60 25.60 0.22 -28.05 16 12 H 0.07 3.52 7.46 -2.91 -0.02 3.50 16 13 C 0.01 0.38 5.46 84.65 0.46 0.85 16 14 N -0.93 -55.00 13.29 21.44 0.28 -54.72 16 15 Si 0.96 43.34 29.54 68.60 2.03 45.37 16 16 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 17 H -0.29 -12.83 7.11 99.48 0.71 -12.12 16 18 H -0.27 -11.43 7.11 99.48 0.71 -10.72 16 19 C 0.09 3.50 5.11 86.31 0.44 3.94 16 20 C -0.16 -5.54 4.96 -10.79 -0.05 -5.59 16 21 C -0.18 -5.97 9.98 30.62 0.31 -5.66 16 22 C -0.15 -4.10 10.25 30.62 0.31 -3.79 16 23 O -0.21 -7.05 9.82 -3.74 -0.04 -7.09 16 24 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 25 H 0.10 0.85 8.14 -2.39 -0.02 0.83 16 26 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 27 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.12 1.70 8.14 -2.38 -0.02 1.68 16 29 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 30 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 31 H 0.07 2.60 7.60 -2.39 -0.02 2.58 16 32 H 0.11 4.31 6.98 -2.38 -0.02 4.30 16 33 H 0.04 1.47 8.12 -2.39 -0.02 1.46 16 34 H 0.02 1.18 6.94 -2.39 -0.02 1.16 16 35 H -0.04 -2.05 8.00 -2.39 -0.02 -2.07 16 36 H 0.26 14.70 8.31 -92.71 -0.77 13.93 16 37 H 0.07 2.50 6.18 -2.39 -0.01 2.49 16 38 H 0.02 0.81 7.79 -2.39 -0.02 0.79 16 39 H 0.09 3.60 8.14 -2.39 -0.02 3.58 16 40 H 0.09 2.81 8.03 -2.38 -0.02 2.79 16 41 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 42 H 0.11 2.52 8.14 -2.39 -0.02 2.50 16 43 H 0.10 2.46 8.14 -2.39 -0.02 2.44 16 Total: -1.00 -65.15 355.69 1.23 -63.92 By element: Atomic # 1 Polarization: 17.60 SS G_CDS: 0.97 Total: 18.58 kcal Atomic # 6 Polarization: -24.22 SS G_CDS: 5.24 Total: -18.98 kcal Atomic # 7 Polarization: -94.83 SS G_CDS: -6.97 Total: -101.80 kcal Atomic # 8 Polarization: -7.05 SS G_CDS: -0.04 Total: -7.09 kcal Atomic # 14 Polarization: 43.34 SS G_CDS: 2.03 Total: 45.37 kcal Total: -65.15 1.23 -63.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000428243059.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.741 kcal (2) G-P(sol) polarization free energy of solvation -65.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds