Wall clock time and date at job start Tue Mar 31 2020 00:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47208 * 2 1 4 4 C 1.53002 * 109.47027 * 119.99735 * 2 1 3 5 5 C 1.52998 * 109.47379 * 175.00371 * 4 2 1 6 6 H 1.08999 * 115.56351 * 29.30856 * 5 4 2 7 7 C 1.52998 * 117.49808 * 243.62227 * 5 4 2 8 8 C 1.52997 * 117.50168 * 174.99747 * 5 4 2 9 9 H 1.09005 * 117.51896 * 0.02562 * 8 5 4 10 10 C 1.50698 * 117.50265 * 214.97562 * 8 5 4 11 11 O 1.21285 * 119.99686 * 359.97438 * 10 8 5 12 12 N 1.34775 * 120.00318 * 179.97438 * 10 8 5 13 13 C 1.46499 * 120.00337 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.46992 * 269.99986 * 13 12 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.46502 * 120.00005 * 0.02562 * 12 10 8 23 23 C 1.52998 * 109.47482 * 270.00252 * 22 12 10 24 24 C 1.47194 * 109.47577 * 179.97438 * 23 22 12 25 25 N 8.43313 * 106.02274 * 117.20480 * 2 1 3 26 26 H 1.09000 * 109.47161 * 300.00410 * 1 2 3 27 27 H 1.09003 * 109.46803 * 60.00388 * 1 2 3 28 28 H 1.08999 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47973 * 239.99738 * 2 1 3 30 30 H 1.09003 * 109.46922 * 299.99540 * 3 2 1 31 31 H 1.09004 * 109.47163 * 59.99310 * 3 2 1 32 32 H 1.08997 * 109.47552 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47423 * 55.00043 * 4 2 1 34 34 H 1.09003 * 109.47088 * 295.00166 * 4 2 1 35 35 H 1.09003 * 117.49834 * 145.01842 * 7 5 4 36 36 H 1.08995 * 117.51753 * 359.97438 * 7 5 4 37 37 H 1.09002 * 109.47391 * 149.99977 * 13 12 10 38 38 H 1.09001 * 109.46813 * 30.00033 * 13 12 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.46888 * 29.99915 * 22 12 10 41 41 H 1.08994 * 109.47490 * 149.99977 * 22 12 10 42 42 H 1.09005 * 109.46883 * 300.00131 * 23 22 12 43 43 H 1.09005 * 109.47362 * 59.99236 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1882 6 1 4.0721 -0.0355 0.6423 7 6 4.1696 -2.2344 1.1157 8 6 4.2801 -1.4195 2.4058 9 1 3.6647 -1.7290 3.2506 10 6 5.6321 -0.8551 2.7587 11 8 6.1133 0.0320 2.0860 12 7 6.3066 -1.3360 3.8218 13 6 7.6207 -0.7869 4.1652 14 6 8.6935 -1.5671 3.4500 15 1 8.4235 -2.3894 2.8040 16 6 10.0198 -1.2304 3.6196 17 7 10.3486 -0.2289 4.4059 18 14 11.3495 -2.1970 2.7326 19 1 10.7222 -3.2658 1.9143 20 1 12.1185 -1.2845 1.8487 21 1 12.2649 -2.8088 3.7291 22 6 5.7257 -2.4079 4.6341 23 6 4.8916 -1.7980 5.7624 24 6 4.3075 -2.8750 6.5782 25 7 3.8577 -3.7056 7.2089 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8898 30 1 1.6767 1.9563 -0.8901 31 1 1.6765 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6053 -1.7198 1.2953 34 1 1.7515 -0.1582 2.1370 35 1 5.0749 -2.3623 0.5221 36 1 3.4816 -3.0797 1.1119 37 1 7.7750 -0.8599 5.2417 38 1 7.6682 0.2588 3.8613 39 1 11.2817 0.0077 4.5255 40 1 5.0886 -3.0332 4.0086 41 1 6.5246 -3.0148 5.0600 42 1 5.5287 -1.1727 6.3880 43 1 4.0926 -1.1911 5.3365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000448772619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:50 Heat of formation + Delta-G solvation = -9.635025 kcal Electronic energy + Delta-G solvation = -21550.518367 eV Core-core repulsion = 18402.889403 eV Total energy + Delta-G solvation = -3147.628964 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.69940 -37.59120 -36.78497 -35.29292 -34.82248 -32.83840 -30.81497 -28.09629 -27.30232 -27.06181 -24.34134 -23.86354 -21.98622 -21.04148 -19.84588 -18.39112 -17.51243 -16.75055 -16.45564 -15.74347 -15.26805 -14.70462 -14.58164 -14.37285 -14.13502 -13.95571 -13.63408 -13.17250 -12.94524 -12.61873 -12.49184 -12.39146 -12.31690 -12.12861 -11.80918 -11.72737 -11.63533 -11.28463 -11.08423 -10.96106 -10.88543 -10.85888 -10.64274 -10.61368 -10.18897 -10.06303 -9.83236 -9.67080 -8.97320 -8.47422 -7.81780 -6.08669 -4.13083 2.73813 2.82700 3.12590 3.27987 3.36059 3.39361 3.63126 4.01327 4.24670 4.41194 4.63555 4.78894 4.82086 5.00966 5.06203 5.06826 5.16818 5.19766 5.26725 5.38137 5.39857 5.50570 5.51964 5.61619 5.69409 5.74951 5.80334 5.81111 5.87329 5.94466 6.07335 6.10077 6.14432 6.21459 6.30960 6.50522 6.96625 7.37329 7.45531 7.58883 7.87905 8.18094 8.30081 8.85665 9.02436 9.52566 10.99498 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.004739 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.132086 B = 5906.458090 C = 7389.374976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.094 4.094 3 C -0.151 4.151 4 C -0.084 4.084 5 C -0.123 4.123 6 H 0.120 0.880 7 C -0.152 4.152 8 C -0.189 4.189 9 H 0.116 0.884 10 C 0.537 3.463 11 O -0.534 6.534 12 N -0.594 5.594 13 C 0.244 3.756 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.062 3.938 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.120 3.880 23 C -0.051 4.051 24 C 0.218 3.782 25 N -0.447 5.447 26 H 0.053 0.947 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.050 0.950 31 H 0.053 0.947 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.066 0.934 35 H 0.099 0.901 36 H 0.098 0.902 37 H 0.035 0.965 38 H 0.046 0.954 39 H 0.263 0.737 40 H 0.077 0.923 41 H 0.092 0.908 42 H 0.117 0.883 43 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.028 -1.015 -4.515 17.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.112 4.112 3 C -0.208 4.208 4 C -0.121 4.121 5 C -0.141 4.141 6 H 0.138 0.862 7 C -0.189 4.189 8 C -0.210 4.210 9 H 0.134 0.866 10 C 0.323 3.677 11 O -0.411 6.411 12 N -0.325 5.325 13 C 0.125 3.875 14 C -0.566 4.566 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.533 5.533 18 Si 0.724 3.276 19 H -0.198 1.198 20 H -0.209 1.209 21 H -0.210 1.210 22 C -0.007 4.007 23 C -0.093 4.093 24 C -0.100 4.100 25 N -0.124 5.124 26 H 0.072 0.928 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.085 0.915 35 H 0.117 0.883 36 H 0.116 0.884 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.096 0.904 41 H 0.111 0.889 42 H 0.135 0.865 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -17.248 -1.664 -3.847 17.750 hybrid contribution 1.083 -0.256 -0.479 1.212 sum -16.164 -1.921 -4.326 16.843 Atomic orbital electron populations 1.21847 0.95518 1.01464 1.01626 1.21065 0.95160 0.96608 0.98414 1.21914 1.01951 0.95628 1.01349 1.21265 0.92427 1.00381 0.98040 1.22467 0.94564 0.97485 0.99632 0.86228 1.23052 1.03271 0.94562 0.98037 1.22451 0.97598 1.07085 0.93892 0.86574 1.19450 0.84940 0.82528 0.80751 1.90673 1.69281 1.30737 1.50393 1.48111 1.20632 1.36422 1.27312 1.19353 0.76322 0.95743 0.96049 1.21464 0.90924 1.16137 1.28088 0.92328 1.24918 0.98613 0.95189 0.95293 1.69930 1.17998 1.27806 1.37534 0.86468 0.81644 0.79926 0.79541 1.19795 1.20890 1.20973 1.21275 0.97582 0.90353 0.91458 1.19930 1.00559 0.92526 0.96287 1.29114 0.93082 0.94251 0.93551 1.81193 1.10109 1.10839 1.10286 0.92768 0.92863 0.92886 0.91097 0.93103 0.92772 0.91809 0.91867 0.91497 0.88288 0.88380 0.94747 0.93600 0.92740 0.90446 0.88932 0.86548 0.87550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.09 -0.84 2.92 -90.62 -0.26 -1.11 16 3 C -0.15 -1.45 9.01 37.16 0.33 -1.12 16 4 C -0.08 -0.80 4.96 -26.73 -0.13 -0.93 16 5 C -0.12 -1.52 5.04 -90.62 -0.46 -1.97 16 6 H 0.12 1.74 5.91 -51.93 -0.31 1.43 16 7 C -0.15 -1.86 9.88 -26.73 -0.26 -2.12 16 8 C -0.19 -2.55 4.52 -91.77 -0.41 -2.96 16 9 H 0.12 1.25 6.48 -51.93 -0.34 0.92 16 10 C 0.54 10.11 7.46 -10.99 -0.08 10.02 16 11 O -0.53 -12.55 15.84 5.55 0.09 -12.46 16 12 N -0.59 -11.10 2.46 -175.06 -0.43 -11.53 16 13 C 0.24 5.85 5.16 -5.19 -0.03 5.82 16 14 C -0.53 -14.20 9.39 -34.44 -0.32 -14.52 16 15 H 0.06 1.59 7.81 -52.49 -0.41 1.18 16 16 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 17 N -0.89 -25.62 13.29 55.43 0.74 -24.89 16 18 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 22 C 0.12 1.65 5.00 -4.04 -0.02 1.63 16 23 C -0.05 -0.56 5.91 -29.52 -0.17 -0.73 16 24 C 0.22 2.68 15.43 -20.77 -0.32 2.36 16 25 N -0.45 -6.64 18.54 42.15 0.78 -5.86 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.71 6.41 -51.93 -0.33 0.37 16 33 H 0.06 0.54 7.88 -51.93 -0.41 0.13 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.10 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.10 0.96 8.03 -51.93 -0.42 0.54 16 37 H 0.03 0.82 8.07 -51.93 -0.42 0.40 16 38 H 0.05 1.26 7.42 -51.93 -0.39 0.87 16 39 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 40 H 0.08 0.92 6.64 -51.93 -0.34 0.57 16 41 H 0.09 1.36 8.07 -51.93 -0.42 0.94 16 42 H 0.12 1.25 8.14 -51.93 -0.42 0.83 16 43 H 0.11 0.95 7.45 -51.93 -0.39 0.57 16 LS Contribution 362.05 15.07 5.46 5.46 Total: -1.00 -32.04 362.05 -7.40 -39.44 By element: Atomic # 1 Polarization: 5.45 SS G_CDS: -7.11 Total: -1.66 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: -1.90 Total: -4.80 kcal Atomic # 7 Polarization: -43.36 SS G_CDS: 1.09 Total: -42.27 kcal Atomic # 8 Polarization: -12.55 SS G_CDS: 0.09 Total: -12.46 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.04 -7.40 -39.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448772619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.806 kcal (2) G-P(sol) polarization free energy of solvation -32.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds