Wall clock time and date at job start Tue Mar 31 2020 00:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.47208 * 2 1 4 4 C 1.53002 * 109.47027 * 119.99735 * 2 1 3 5 5 C 1.52998 * 109.47379 * 175.00371 * 4 2 1 6 6 H 1.08999 * 115.56351 * 29.30856 * 5 4 2 7 7 C 1.52998 * 117.49808 * 243.62227 * 5 4 2 8 8 C 1.52997 * 117.50168 * 174.99747 * 5 4 2 9 9 H 1.09005 * 117.51896 * 0.02562 * 8 5 4 10 10 C 1.50698 * 117.50265 * 214.97562 * 8 5 4 11 11 O 1.21285 * 119.99686 * 359.97438 * 10 8 5 12 12 N 1.34775 * 120.00318 * 179.97438 * 10 8 5 13 13 C 1.46499 * 120.00337 * 180.02562 * 12 10 8 14 14 C 1.50701 * 109.46992 * 269.99986 * 13 12 10 15 15 H 1.07998 * 120.00129 * 0.02562 * 14 13 12 16 16 C 1.37880 * 119.99861 * 179.97438 * 14 13 12 17 17 N 1.31510 * 119.99913 * 0.02562 * 16 14 13 18 18 Si 1.86797 * 119.99734 * 180.02562 * 16 14 13 19 19 H 1.48502 * 109.47432 * 0.02562 * 18 16 14 20 20 H 1.48506 * 109.46890 * 120.00210 * 18 16 14 21 21 H 1.48501 * 109.47062 * 240.00257 * 18 16 14 22 22 C 1.46502 * 120.00005 * 0.02562 * 12 10 8 23 23 C 1.52998 * 109.47482 * 270.00252 * 22 12 10 24 24 C 1.47194 * 109.47577 * 179.97438 * 23 22 12 25 25 N 8.43313 * 106.02274 * 117.20480 * 2 1 3 26 26 H 1.09000 * 109.47161 * 300.00410 * 1 2 3 27 27 H 1.09003 * 109.46803 * 60.00388 * 1 2 3 28 28 H 1.08999 * 109.47259 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47973 * 239.99738 * 2 1 3 30 30 H 1.09003 * 109.46922 * 299.99540 * 3 2 1 31 31 H 1.09004 * 109.47163 * 59.99310 * 3 2 1 32 32 H 1.08997 * 109.47552 * 179.97438 * 3 2 1 33 33 H 1.09001 * 109.47423 * 55.00043 * 4 2 1 34 34 H 1.09003 * 109.47088 * 295.00166 * 4 2 1 35 35 H 1.09003 * 117.49834 * 145.01842 * 7 5 4 36 36 H 1.08995 * 117.51753 * 359.97438 * 7 5 4 37 37 H 1.09002 * 109.47391 * 149.99977 * 13 12 10 38 38 H 1.09001 * 109.46813 * 30.00033 * 13 12 10 39 39 H 0.97002 * 119.99768 * 179.97438 * 17 16 14 40 40 H 1.08998 * 109.46888 * 29.99915 * 22 12 10 41 41 H 1.08994 * 109.47490 * 149.99977 * 22 12 10 42 42 H 1.09005 * 109.46883 * 300.00131 * 23 22 12 43 43 H 1.09005 * 109.47362 * 59.99236 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1882 6 1 4.0721 -0.0355 0.6423 7 6 4.1696 -2.2344 1.1157 8 6 4.2801 -1.4195 2.4058 9 1 3.6647 -1.7290 3.2506 10 6 5.6321 -0.8551 2.7587 11 8 6.1133 0.0320 2.0860 12 7 6.3066 -1.3360 3.8218 13 6 7.6207 -0.7869 4.1652 14 6 8.6935 -1.5671 3.4500 15 1 8.4235 -2.3894 2.8040 16 6 10.0198 -1.2304 3.6196 17 7 10.3486 -0.2289 4.4059 18 14 11.3495 -2.1970 2.7326 19 1 10.7222 -3.2658 1.9143 20 1 12.1185 -1.2845 1.8487 21 1 12.2649 -2.8088 3.7291 22 6 5.7257 -2.4079 4.6341 23 6 4.8916 -1.7980 5.7624 24 6 4.3075 -2.8750 6.5782 25 7 3.8577 -3.7056 7.2089 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8934 -0.5138 -0.8898 30 1 1.6767 1.9563 -0.8901 31 1 1.6765 1.9564 0.8900 32 1 3.1300 1.4426 0.0005 33 1 1.6053 -1.7198 1.2953 34 1 1.7515 -0.1582 2.1370 35 1 5.0749 -2.3623 0.5221 36 1 3.4816 -3.0797 1.1119 37 1 7.7750 -0.8599 5.2417 38 1 7.6682 0.2588 3.8613 39 1 11.2817 0.0077 4.5255 40 1 5.0886 -3.0332 4.0086 41 1 6.5246 -3.0148 5.0600 42 1 5.5287 -1.1727 6.3880 43 1 4.0926 -1.1911 5.3365 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000448772619.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:50:49 Heat of formation + Delta-G solvation = -27.112272 kcal Electronic energy + Delta-G solvation = -21551.276237 eV Core-core repulsion = 18402.889403 eV Total energy + Delta-G solvation = -3148.386834 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.05746 -38.62940 -37.91941 -36.66996 -35.81172 -34.80940 -32.16097 -29.61876 -28.25355 -27.93474 -25.80828 -25.29625 -23.35706 -22.03310 -20.63860 -19.73829 -18.74406 -18.32718 -18.03238 -17.20030 -16.38736 -16.09917 -15.74498 -15.65847 -15.21772 -15.13433 -14.61700 -14.38975 -14.24697 -13.90431 -13.65882 -13.51091 -13.39032 -13.18916 -12.98633 -12.95339 -12.82970 -12.68875 -12.53764 -12.43672 -12.19160 -11.94726 -11.84181 -11.65709 -11.60233 -11.39705 -11.02110 -10.79228 -10.60117 -10.48972 -9.46996 -8.19140 -6.31667 1.38132 1.40488 1.51202 1.63890 1.82141 1.84575 2.26486 2.44084 2.97033 3.11046 3.16238 3.67013 3.85885 3.95029 4.04834 4.14383 4.16356 4.21638 4.30068 4.38644 4.56704 4.57393 4.81621 4.84975 4.89037 4.91560 4.97296 5.03197 5.04945 5.09825 5.14960 5.19140 5.23937 5.33126 5.35558 5.48714 5.59353 5.61070 5.63243 5.88695 6.12134 6.60645 6.74925 6.82009 7.33560 7.53653 8.87801 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.004739 C = 0.003788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.132086 B = 5906.458090 C = 7389.374976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.076 4.076 5 C -0.119 4.119 6 H 0.089 0.911 7 C -0.142 4.142 8 C -0.189 4.189 9 H 0.156 0.844 10 C 0.528 3.472 11 O -0.594 6.594 12 N -0.595 5.595 13 C 0.259 3.741 14 C -0.540 4.540 15 H 0.052 0.948 16 C 0.011 3.989 17 N -0.926 5.926 18 Si 0.959 3.041 19 H -0.268 1.268 20 H -0.284 1.284 21 H -0.272 1.272 22 C 0.116 3.884 23 C -0.038 4.038 24 C 0.247 3.753 25 N -0.487 5.487 26 H 0.056 0.944 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.057 0.943 31 H 0.055 0.945 32 H 0.040 0.960 33 H 0.085 0.915 34 H 0.072 0.928 35 H 0.074 0.926 36 H 0.136 0.864 37 H 0.035 0.965 38 H 0.002 0.998 39 H 0.266 0.734 40 H 0.106 0.894 41 H 0.082 0.918 42 H 0.119 0.881 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.177 -2.721 -4.638 19.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.112 4.112 3 C -0.209 4.209 4 C -0.113 4.113 5 C -0.138 4.138 6 H 0.107 0.893 7 C -0.179 4.179 8 C -0.210 4.210 9 H 0.173 0.827 10 C 0.318 3.682 11 O -0.475 6.475 12 N -0.324 5.324 13 C 0.138 3.862 14 C -0.579 4.579 15 H 0.070 0.930 16 C -0.188 4.188 17 N -0.566 5.566 18 Si 0.784 3.216 19 H -0.192 1.192 20 H -0.210 1.210 21 H -0.197 1.197 22 C -0.009 4.009 23 C -0.079 4.079 24 C -0.071 4.071 25 N -0.165 5.165 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.086 0.914 30 H 0.076 0.924 31 H 0.074 0.926 32 H 0.059 0.941 33 H 0.104 0.896 34 H 0.091 0.909 35 H 0.093 0.907 36 H 0.154 0.846 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.075 0.925 40 H 0.124 0.876 41 H 0.100 0.900 42 H 0.137 0.863 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -19.430 -3.408 -3.947 20.117 hybrid contribution 1.778 0.329 -0.475 1.869 sum -17.652 -3.079 -4.422 18.456 Atomic orbital electron populations 1.21806 0.94000 1.02252 1.01988 1.21063 0.96324 0.95661 0.98175 1.21918 1.00443 0.96760 1.01809 1.21269 0.89853 1.01800 0.98416 1.22477 0.96299 0.96781 0.98240 0.89297 1.23160 1.02965 0.95692 0.96106 1.22422 0.94743 1.08083 0.95767 0.82690 1.20415 0.86588 0.81601 0.79642 1.90644 1.71176 1.33455 1.52225 1.48007 1.19025 1.37271 1.28139 1.18812 0.78715 0.93291 0.95426 1.21775 0.92051 1.16062 1.28000 0.92965 1.25739 1.00918 0.96134 0.96048 1.70032 1.18566 1.29162 1.38815 0.85495 0.78953 0.78588 0.78549 1.19247 1.21029 1.19710 1.21489 0.97983 0.89192 0.92222 1.19832 1.00958 0.92005 0.95121 1.29087 0.91886 0.93455 0.92636 1.81239 1.11732 1.11987 1.11574 0.92449 0.92543 0.91857 0.91430 0.92393 0.92608 0.94137 0.89639 0.90910 0.90733 0.84597 0.94739 0.98002 0.92543 0.87571 0.89994 0.86318 0.84607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 71.98 0.66 -1.10 16 2 C -0.09 -1.49 2.92 -10.79 -0.03 -1.52 16 3 C -0.15 -2.85 9.01 71.98 0.65 -2.20 16 4 C -0.08 -1.22 4.96 30.59 0.15 -1.07 16 5 C -0.12 -2.77 5.04 -10.80 -0.05 -2.82 16 6 H 0.09 2.67 5.91 -2.39 -0.01 2.66 16 7 C -0.14 -3.14 9.88 30.59 0.30 -2.84 16 8 C -0.19 -4.69 4.52 -11.54 -0.05 -4.74 16 9 H 0.16 2.60 6.48 -2.38 -0.02 2.59 16 10 C 0.53 19.99 7.46 87.66 0.65 20.64 16 11 O -0.59 -29.31 15.84 -3.05 -0.05 -29.36 16 12 N -0.59 -22.18 2.46 -826.16 -2.03 -24.21 16 13 C 0.26 12.82 5.16 85.63 0.44 13.26 16 14 C -0.54 -29.75 9.39 25.60 0.24 -29.51 16 15 H 0.05 2.87 7.81 -2.91 -0.02 2.85 16 16 C 0.01 0.60 5.46 84.66 0.46 1.06 16 17 N -0.93 -54.28 13.29 21.45 0.28 -53.99 16 18 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 21 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 22 C 0.12 2.95 5.00 86.38 0.43 3.39 16 23 C -0.04 -0.72 5.91 28.79 0.17 -0.55 16 24 C 0.25 5.40 15.43 89.44 1.38 6.78 16 25 N -0.49 -13.46 18.54 20.00 0.37 -13.09 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 29 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 30 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.05 1.00 8.14 -2.38 -0.02 0.98 16 32 H 0.04 0.94 6.41 -2.39 -0.02 0.92 16 33 H 0.09 1.04 7.88 -2.39 -0.02 1.02 16 34 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.14 2.01 8.03 -2.39 -0.02 2.00 16 37 H 0.03 1.69 8.07 -2.39 -0.02 1.67 16 38 H 0.00 0.11 7.42 -2.39 -0.02 0.09 16 39 H 0.27 14.68 8.31 -92.71 -0.77 13.91 16 40 H 0.11 2.14 6.64 -2.39 -0.02 2.12 16 41 H 0.08 2.30 8.07 -2.39 -0.02 2.28 16 42 H 0.12 2.31 8.14 -2.38 -0.02 2.29 16 43 H 0.14 1.86 7.45 -2.38 -0.02 1.85 16 Total: -1.00 -73.26 362.05 6.99 -66.27 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: 0.98 Total: 9.48 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: 5.41 Total: -1.23 kcal Atomic # 7 Polarization: -89.92 SS G_CDS: -1.37 Total: -91.30 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Total: -73.26 6.99 -66.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000448772619.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.156 kcal (2) G-P(sol) polarization free energy of solvation -73.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.268 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds