Wall clock time and date at job start Tue Mar 31 2020 00:53:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35918 * 116.99864 * 2 1 4 4 C 1.39138 * 120.47329 * 0.02562 * 3 2 1 5 5 C 1.38539 * 118.37189 * 179.97438 * 4 3 2 6 6 C 1.38249 * 119.22143 * 0.27849 * 5 4 3 7 7 N 1.31849 * 120.88717 * 359.41726 * 6 5 4 8 8 C 1.31845 * 121.77935 * 0.59722 * 7 6 5 9 9 C 1.50698 * 119.65803 * 179.72114 * 8 7 6 10 10 N 1.46909 * 109.47114 * 269.97578 * 9 8 7 11 11 C 1.46901 * 110.99868 * 179.97438 * 10 9 8 12 12 C 1.52995 * 109.46762 * 180.02562 * 11 10 9 13 13 C 1.53001 * 109.47420 * 299.99834 * 12 11 10 14 14 C 1.53000 * 109.47337 * 60.00289 * 12 11 10 15 15 C 1.53003 * 109.46978 * 180.02562 * 12 11 10 16 16 C 1.50701 * 109.47293 * 180.02562 * 15 12 11 17 17 H 1.08004 * 119.99854 * 0.02562 * 16 15 12 18 18 C 1.37878 * 120.00500 * 179.97438 * 16 15 12 19 19 N 1.31509 * 120.00386 * 180.02562 * 18 16 15 20 20 Si 1.86803 * 119.99410 * 359.97438 * 18 16 15 21 21 H 1.48503 * 109.46944 * 90.00072 * 20 18 16 22 22 H 1.48499 * 109.46936 * 209.99765 * 20 18 16 23 23 H 1.48496 * 109.47398 * 329.99824 * 20 18 16 24 24 H 1.09004 * 109.46757 * 59.99801 * 1 2 3 25 25 H 1.08997 * 109.46778 * 180.02562 * 1 2 3 26 26 H 1.09002 * 109.47179 * 300.00109 * 1 2 3 27 27 H 1.07995 * 120.81447 * 359.95459 * 4 3 2 28 28 H 1.08002 * 120.38514 * 179.97438 * 5 4 3 29 29 H 1.08002 * 119.55802 * 179.72089 * 6 5 4 30 30 H 1.09002 * 109.47421 * 29.97501 * 9 8 7 31 31 H 1.08999 * 109.47033 * 149.98001 * 9 8 7 32 32 H 1.00900 * 110.99571 * 56.04986 * 10 9 8 33 33 H 1.08998 * 109.46976 * 299.99838 * 11 10 9 34 34 H 1.08998 * 109.47014 * 60.00533 * 11 10 9 35 35 H 1.09005 * 109.46738 * 60.00412 * 13 12 11 36 36 H 1.08997 * 109.47147 * 179.97438 * 13 12 11 37 37 H 1.08990 * 109.47178 * 300.00263 * 13 12 11 38 38 H 1.09001 * 109.47288 * 60.00027 * 14 12 11 39 39 H 1.08997 * 109.47643 * 179.97438 * 14 12 11 40 40 H 1.09005 * 109.47171 * 299.99802 * 14 12 11 41 41 H 1.09001 * 109.47269 * 299.99741 * 15 12 11 42 42 H 1.08998 * 109.47006 * 60.00277 * 15 12 11 43 43 H 0.97003 * 120.00318 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2111 0.0000 4 6 1.2979 2.3842 0.0005 5 6 1.9716 3.5947 0.0011 6 6 3.3541 3.5976 -0.0048 7 7 4.0334 2.4676 0.0006 8 6 3.4305 1.2950 0.0001 9 6 4.2542 0.0331 0.0001 10 7 4.5219 -0.3770 -1.3850 11 6 5.3250 -1.6064 -1.4241 12 6 5.5831 -2.0007 -2.8797 13 6 4.2481 -2.2409 -3.5875 14 6 6.3399 -0.8744 -3.5867 15 6 6.4191 -3.2815 -2.9205 16 6 6.6739 -3.6696 -4.3542 17 1 6.2794 -3.0631 -5.1561 18 6 7.4115 -4.7983 -4.6423 19 7 7.6343 -5.1367 -5.8935 20 14 8.0956 -5.8460 -3.2553 21 1 7.1048 -6.8895 -2.8883 22 1 9.3555 -6.4943 -3.6998 23 1 8.3703 -4.9873 -2.0754 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 0.2184 2.3519 0.0002 28 1 1.4233 4.5251 0.0011 29 1 3.8849 4.5382 -0.0090 30 1 5.1981 0.2152 0.5139 31 1 3.7075 -0.7576 0.5139 32 1 4.9710 0.3645 -1.9012 33 1 6.2763 -1.4351 -0.9203 34 1 4.7861 -2.4086 -0.9201 35 1 3.6522 -1.3286 -3.5584 36 1 4.4321 -2.5214 -4.6246 37 1 3.7091 -3.0432 -3.0838 38 1 7.2910 -0.7034 -3.0825 39 1 6.5242 -1.1555 -4.6235 40 1 5.7439 0.0378 -3.5576 41 1 7.3703 -3.1108 -2.4162 42 1 5.8796 -4.0837 -2.4170 43 1 8.1529 -5.9310 -6.0962 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449751805.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:53:55 Heat of formation + Delta-G solvation = -33.597820 kcal Electronic energy + Delta-G solvation = -21713.848045 eV Core-core repulsion = 18565.179976 eV Total energy + Delta-G solvation = -3148.668069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.63948 -39.25208 -38.98417 -36.04112 -34.34712 -32.98493 -31.75988 -29.66324 -28.30579 -27.93111 -27.68268 -25.80911 -23.78885 -23.69761 -22.67560 -19.56505 -18.97028 -18.85551 -18.09132 -17.24785 -16.85543 -16.38201 -16.33425 -15.79801 -15.42812 -15.24974 -14.95625 -14.76886 -14.41695 -14.30907 -14.05899 -13.87360 -13.49588 -13.40109 -12.90617 -12.76933 -12.74008 -12.41435 -12.29568 -12.24761 -12.19683 -12.06048 -11.70388 -11.36663 -11.03377 -10.85066 -10.68724 -10.66535 -10.50748 -9.38901 -9.20208 -8.20479 -6.20745 0.13904 0.33718 1.37158 1.38680 1.50149 2.33366 2.40972 2.73147 3.14484 3.27400 3.61700 3.66876 3.86942 4.08030 4.13921 4.19431 4.29773 4.35357 4.39250 4.41145 4.53956 4.55805 4.74634 4.75976 4.80303 4.87790 4.92198 5.04161 5.08990 5.11709 5.16983 5.18348 5.36371 5.44959 5.52200 5.55090 5.61768 5.75481 5.81488 6.07192 6.33131 6.41787 6.46256 6.86192 7.04884 7.41585 8.95813 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.028702 B = 0.003545 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.291012 B = 7897.537001 C = 8182.526178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.320 6.320 3 C 0.088 3.912 4 C -0.170 4.170 5 C -0.124 4.124 6 C 0.045 3.955 7 N -0.473 5.473 8 C 0.079 3.921 9 C 0.121 3.879 10 N -0.675 5.675 11 C 0.081 3.919 12 C -0.048 4.048 13 C -0.106 4.106 14 C -0.123 4.123 15 C -0.002 4.002 16 C -0.503 4.503 17 H 0.044 0.956 18 C 0.001 3.999 19 N -0.955 5.955 20 Si 0.941 3.059 21 H -0.270 1.270 22 H -0.288 1.288 23 H -0.250 1.250 24 H 0.064 0.936 25 H 0.112 0.888 26 H 0.071 0.929 27 H 0.166 0.834 28 H 0.173 0.827 29 H 0.180 0.820 30 H 0.041 0.959 31 H 0.087 0.913 32 H 0.340 0.660 33 H 0.028 0.972 34 H 0.070 0.930 35 H 0.060 0.940 36 H 0.028 0.972 37 H 0.040 0.960 38 H 0.044 0.956 39 H 0.038 0.962 40 H 0.059 0.941 41 H 0.013 0.987 42 H 0.014 0.986 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.929 17.663 16.675 29.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.232 6.232 3 C 0.039 3.961 4 C -0.196 4.196 5 C -0.143 4.143 6 C -0.112 4.112 7 N -0.183 5.183 8 C -0.060 4.060 9 C -0.008 4.008 10 N -0.307 5.307 11 C -0.048 4.048 12 C -0.048 4.048 13 C -0.163 4.163 14 C -0.180 4.180 15 C -0.040 4.040 16 C -0.542 4.542 17 H 0.062 0.938 18 C -0.195 4.195 19 N -0.597 5.597 20 Si 0.766 3.234 21 H -0.195 1.195 22 H -0.214 1.214 23 H -0.173 1.173 24 H 0.083 0.917 25 H 0.131 0.869 26 H 0.090 0.910 27 H 0.184 0.816 28 H 0.190 0.810 29 H 0.197 0.803 30 H 0.059 0.941 31 H 0.105 0.895 32 H 0.159 0.841 33 H 0.046 0.954 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.063 0.937 39 H 0.057 0.943 40 H 0.078 0.922 41 H 0.032 0.968 42 H 0.032 0.968 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -15.471 17.020 16.526 28.323 hybrid contribution 0.358 -0.448 0.161 0.596 sum -15.113 16.572 16.687 27.955 Atomic orbital electron populations 1.23371 0.76533 1.05554 1.02314 1.86177 1.23252 1.25869 1.87911 1.20005 0.93006 0.86138 0.96968 1.22082 1.02143 0.91571 1.03841 1.22380 0.95281 0.99408 0.97241 1.23133 0.92655 0.96380 0.99079 1.67479 1.41399 0.98341 1.11066 1.20571 0.89208 0.93733 1.02456 1.20548 0.97239 0.92400 0.90603 1.60523 1.51186 1.06724 1.12301 1.21893 0.94786 0.92222 0.95901 1.20346 0.95571 0.95061 0.93840 1.21477 0.95724 1.00334 0.98775 1.21678 0.98948 0.97188 1.00219 1.19586 0.95101 0.94170 0.95117 1.21422 1.31337 1.08775 0.92628 0.93819 1.25920 0.96749 0.99158 0.97639 1.70064 1.42480 1.27124 1.20033 0.85787 0.77919 0.79262 0.80436 1.19498 1.21419 1.17339 0.91716 0.86944 0.91025 0.81638 0.80971 0.80281 0.94131 0.89520 0.84104 0.95424 0.91183 0.92110 0.95254 0.94128 0.93702 0.94309 0.92209 0.96840 0.96814 0.92887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.83 113.37 1.11 1.32 16 2 O -0.32 -7.08 9.55 -92.62 -0.88 -7.97 16 3 C 0.09 1.96 6.67 22.60 0.15 2.11 16 4 C -0.17 -2.66 9.14 22.56 0.21 -2.46 16 5 C -0.12 -1.67 10.11 22.34 0.23 -1.44 16 6 C 0.04 0.80 11.18 84.69 0.95 1.75 16 7 N -0.47 -11.81 10.27 -183.51 -1.88 -13.69 16 8 C 0.08 2.05 6.31 42.67 0.27 2.32 16 9 C 0.12 3.31 5.76 85.55 0.49 3.81 16 10 N -0.68 -20.36 5.70 -517.93 -2.95 -23.32 16 11 C 0.08 2.70 4.65 86.30 0.40 3.10 16 12 C -0.05 -1.90 0.60 -52.18 -0.03 -1.93 16 13 C -0.11 -4.23 8.06 71.98 0.58 -3.65 16 14 C -0.12 -4.77 7.89 71.98 0.57 -4.20 16 15 C 0.00 -0.09 3.11 29.85 0.09 0.00 16 16 C -0.50 -28.98 8.20 25.60 0.21 -28.77 16 17 H 0.04 2.75 5.92 -2.91 -0.02 2.74 16 18 C 0.00 0.06 5.47 84.66 0.46 0.52 16 19 N -0.95 -60.98 13.96 21.45 0.30 -60.68 16 20 Si 0.94 45.53 27.47 68.60 1.88 47.42 16 21 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 22 H -0.29 -13.76 7.11 99.48 0.71 -13.05 16 23 H -0.25 -11.30 6.54 99.48 0.65 -10.65 16 24 H 0.06 0.68 7.70 -2.38 -0.02 0.66 16 25 H 0.11 1.15 8.14 -2.39 -0.02 1.13 16 26 H 0.07 0.60 7.70 -2.39 -0.02 0.58 16 27 H 0.17 1.53 6.45 -2.91 -0.02 1.52 16 28 H 0.17 0.98 8.06 -2.91 -0.02 0.96 16 29 H 0.18 2.13 8.06 -2.91 -0.02 2.11 16 30 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 31 H 0.09 2.34 7.52 -2.39 -0.02 2.32 16 32 H 0.34 10.41 6.76 -89.69 -0.61 9.80 16 33 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.06 2.20 7.60 -2.38 -0.02 2.19 16 36 H 0.03 1.32 6.62 -2.39 -0.02 1.30 16 37 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 39 H 0.04 1.72 6.62 -2.39 -0.02 1.70 16 40 H 0.06 2.00 6.57 -2.38 -0.02 1.98 16 41 H 0.01 0.64 7.20 -2.39 -0.02 0.62 16 42 H 0.01 0.64 7.57 -2.39 -0.02 0.62 16 43 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 Total: -1.00 -71.16 342.18 2.48 -68.68 By element: Atomic # 1 Polarization: 16.75 SS G_CDS: 0.33 Total: 17.08 kcal Atomic # 6 Polarization: -33.21 SS G_CDS: 5.69 Total: -27.52 kcal Atomic # 7 Polarization: -93.15 SS G_CDS: -4.54 Total: -97.69 kcal Atomic # 8 Polarization: -7.08 SS G_CDS: -0.88 Total: -7.97 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 1.88 Total: 47.42 kcal Total: -71.16 2.48 -68.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449751805.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.082 kcal (2) G-P(sol) polarization free energy of solvation -71.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.483 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds