Wall clock time and date at job start Tue Mar 31 2020 00:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09007 * 109.46887 * 176.25078 * 3 2 1 5 5 N 1.46502 * 109.47353 * 56.25406 * 3 2 1 6 6 C 1.34777 * 119.99974 * 84.99763 * 5 3 2 7 7 O 1.21589 * 119.99994 * 0.02562 * 6 5 3 8 8 N 1.34772 * 119.99956 * 180.02562 * 6 5 3 9 9 C 1.46497 * 120.00440 * 179.72524 * 8 6 5 10 10 C 1.52996 * 109.47656 * 178.57993 * 9 8 6 11 11 C 1.50697 * 115.54802 * 65.14134 * 10 9 8 12 12 H 1.07995 * 120.00253 * 265.47861 * 11 10 9 13 13 C 1.37881 * 120.00063 * 85.48196 * 11 10 9 14 14 N 1.31516 * 119.99797 * 353.65542 * 13 11 10 15 15 Si 1.86794 * 120.00140 * 173.65276 * 13 11 10 16 16 H 1.48497 * 109.47376 * 89.99796 * 15 13 11 17 17 H 1.48501 * 109.47246 * 209.99805 * 15 13 11 18 18 H 1.48494 * 109.47267 * 329.99918 * 15 13 11 19 19 C 1.53004 * 117.49804 * 279.47475 * 10 9 8 20 20 C 1.53000 * 117.50114 * 210.81549 * 10 9 8 21 21 C 1.52997 * 109.46975 * 296.25028 * 3 2 1 22 22 C 1.53009 * 109.46963 * 180.02562 * 21 3 2 23 23 C 1.53000 * 109.47535 * 300.00006 * 21 3 2 24 24 C 1.53002 * 109.47193 * 60.00735 * 21 3 2 25 25 H 4.18736 * 15.03961 * 359.97438 * 4 2 1 26 26 H 0.96999 * 119.99480 * 265.00333 * 5 3 2 27 27 H 0.97006 * 119.99991 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47195 * 298.58663 * 9 8 6 29 29 H 1.09005 * 109.46891 * 58.57441 * 9 8 6 30 30 H 0.97000 * 119.99892 * 185.07859 * 14 13 11 31 31 H 1.09000 * 117.49908 * 359.97438 * 19 10 9 32 32 H 1.08996 * 117.49422 * 145.01872 * 19 10 9 33 33 H 1.08998 * 117.49824 * 214.98206 * 20 10 9 34 34 H 1.09000 * 117.49683 * 359.97314 * 20 10 9 35 35 H 1.08997 * 109.47178 * 60.00060 * 22 21 3 36 36 H 1.08992 * 109.46923 * 180.02562 * 22 21 3 37 37 H 1.09003 * 109.46716 * 299.99787 * 22 21 3 38 38 H 1.09003 * 109.46374 * 59.99816 * 23 21 3 39 39 H 1.08999 * 109.46879 * 180.02562 * 23 21 3 40 40 H 1.08997 * 109.47176 * 300.00290 * 23 21 3 41 41 H 1.08992 * 109.47361 * 59.99355 * 24 21 3 42 42 H 1.08991 * 109.47064 * 180.02562 * 24 21 3 43 43 H 1.09006 * 109.46535 * 299.99682 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 1.0264 -0.0672 5 7 3.1347 -0.7664 -1.1485 6 6 3.2631 -0.1713 -2.3509 7 8 2.9738 1.0023 -2.4824 8 7 3.7122 -0.8771 -3.4076 9 6 3.8462 -0.2319 -4.7160 10 6 4.4051 -1.2366 -5.7254 11 6 3.5133 -2.4112 -6.0351 12 1 3.6363 -3.3394 -5.4969 13 6 2.5403 -2.3009 -7.0058 14 7 2.3064 -1.1378 -7.5732 15 14 1.5542 -3.8035 -7.5148 16 1 0.3422 -3.9120 -6.6637 17 1 1.1498 -3.6715 -8.9376 18 1 2.3868 -5.0218 -7.3479 19 6 5.9158 -1.4791 -5.7182 20 6 5.2724 -0.6893 -6.8608 21 6 3.1562 -0.6371 1.2937 22 6 4.6863 -0.6359 1.2940 23 6 2.6459 0.1640 2.4932 24 6 2.6470 -2.0768 1.3880 25 1 -1.0500 -0.0011 -0.0004 26 1 3.3658 -1.7026 -1.0435 27 1 3.9434 -1.8133 -3.3026 28 1 2.8690 0.1151 -5.0517 29 1 4.5248 0.6173 -4.6346 30 1 1.5737 -1.0434 -8.2019 31 1 6.5115 -0.9225 -4.9947 32 1 6.2645 -2.4881 -5.9380 33 1 5.1982 -1.1790 -7.8317 34 1 5.4444 0.3867 -6.8888 35 1 5.0488 0.3899 1.2270 36 1 5.0498 -1.0906 2.2154 37 1 5.0502 -1.2064 0.4395 38 1 1.5558 0.1635 2.4931 39 1 3.0098 -0.2902 3.4148 40 1 3.0087 1.1896 2.4260 41 1 3.0105 -2.6475 0.5335 42 1 3.0101 -2.5310 2.3098 43 1 1.5569 -2.0773 1.3879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491230728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:25 Heat of formation + Delta-G solvation = 34.668409 kcal Electronic energy + Delta-G solvation = -21956.359894 eV Core-core repulsion = 18810.652071 eV Total energy + Delta-G solvation = -3145.707823 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.89999 -38.03793 -36.60752 -33.41964 -33.21245 -32.21330 -31.93672 -27.54179 -27.36313 -27.15216 -25.70764 -24.65716 -21.20900 -20.40241 -19.70936 -19.36768 -18.18989 -17.56316 -16.36628 -15.72062 -15.21748 -14.82014 -14.67733 -14.38414 -14.19364 -13.84563 -13.77758 -13.18666 -13.13330 -12.60448 -12.34586 -12.19396 -11.85492 -11.74744 -11.56384 -11.42093 -11.02233 -10.99429 -10.98687 -10.92192 -10.52129 -10.40543 -10.25737 -9.94004 -9.70657 -9.49046 -9.01175 -8.94255 -8.48141 -8.24763 -7.97455 -6.06390 -4.14920 2.65904 2.97124 3.26232 3.34064 3.35551 3.55224 3.78488 4.35430 4.36498 4.59303 4.66904 4.80307 4.92285 5.21836 5.25234 5.36626 5.42810 5.47029 5.61479 5.64168 5.71720 5.78581 5.86367 5.98283 6.04659 6.06473 6.14460 6.20328 6.35971 6.48800 6.61440 6.70769 6.74495 6.87305 7.10374 7.34465 7.42446 7.48903 7.60695 7.76360 7.82529 8.35489 8.66794 8.85564 9.21826 9.51687 11.01451 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.004409 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.310071 B = 6349.181762 C = 6867.996189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.181 4.181 3 C 0.283 3.717 4 H 0.106 0.894 5 N -0.744 5.744 6 C 0.699 3.301 7 O -0.600 6.600 8 N -0.719 5.719 9 C 0.182 3.818 10 C 0.028 3.972 11 C -0.500 4.500 12 H 0.059 0.941 13 C 0.074 3.926 14 N -0.874 5.874 15 Si 0.889 3.111 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.273 1.273 19 C -0.210 4.210 20 C -0.147 4.147 21 C -0.070 4.070 22 C -0.141 4.141 23 C -0.140 4.140 24 C -0.144 4.144 25 H 0.214 0.786 26 H 0.395 0.605 27 H 0.395 0.605 28 H 0.069 0.931 29 H 0.035 0.965 30 H 0.261 0.739 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.083 0.917 34 H 0.065 0.935 35 H 0.059 0.941 36 H 0.058 0.942 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.059 0.941 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.024 -0.999 17.636 17.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.183 4.183 3 C 0.178 3.822 4 H 0.124 0.876 5 N -0.401 5.401 6 C 0.399 3.601 7 O -0.479 6.479 8 N -0.371 5.371 9 C 0.059 3.941 10 C 0.027 3.973 11 C -0.537 4.537 12 H 0.077 0.923 13 C -0.130 4.130 14 N -0.510 5.510 15 Si 0.717 3.283 16 H -0.207 1.207 17 H -0.212 1.212 18 H -0.198 1.198 19 C -0.248 4.248 20 C -0.185 4.185 21 C -0.070 4.070 22 C -0.198 4.198 23 C -0.198 4.198 24 C -0.202 4.202 25 H 0.231 0.769 26 H 0.230 0.770 27 H 0.229 0.771 28 H 0.087 0.913 29 H 0.053 0.947 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.084 0.916 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.078 0.922 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 1.729 0.177 17.243 17.330 hybrid contribution -0.773 -1.629 -0.417 1.850 sum 0.956 -1.452 16.825 16.915 Atomic orbital electron populations 1.24855 0.95850 1.01094 1.00220 1.23506 0.94756 0.99930 1.00114 1.17591 0.82953 0.97118 0.84579 0.87634 1.45191 1.72288 1.14310 1.08267 1.16054 0.78520 0.85240 0.80295 1.90877 1.57606 1.15262 1.84119 1.45135 1.69065 1.14119 1.08774 1.20853 1.00790 0.93233 0.79261 1.19041 0.87345 0.96152 0.94774 1.20317 1.17097 0.96474 1.19842 0.92290 1.24981 0.96888 0.95714 0.95420 1.69976 1.29096 1.22922 1.28978 0.86642 0.80319 0.83393 0.77958 1.20729 1.21154 1.19836 1.23017 0.98709 1.00178 1.02847 1.22486 1.04980 0.96736 0.94337 1.20776 0.96329 0.96279 0.93657 1.21863 0.93333 1.02517 1.02099 1.21844 1.01566 0.99841 0.96511 1.21915 1.01665 0.94783 1.01790 0.76944 0.76990 0.77128 0.91255 0.94689 0.92860 0.91638 0.90420 0.89832 0.91648 0.92228 0.92247 0.92016 0.92132 0.92105 0.92238 0.92489 0.92201 0.92088 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.73 19.25 29.55 0.57 -2.16 16 2 C -0.18 -2.65 10.29 -37.12 -0.38 -3.04 16 3 C 0.28 3.82 1.72 -70.72 -0.12 3.70 16 4 H 0.11 1.59 7.58 -51.92 -0.39 1.20 16 5 N -0.74 -10.99 4.28 -61.44 -0.26 -11.25 16 6 C 0.70 13.71 8.51 -86.92 -0.74 12.97 16 7 O -0.60 -14.16 16.01 5.29 0.08 -14.07 16 8 N -0.72 -14.30 5.48 -65.23 -0.36 -14.65 16 9 C 0.18 4.23 5.50 -4.05 -0.02 4.21 16 10 C 0.03 0.65 1.38 -155.66 -0.22 0.44 16 11 C -0.50 -12.89 8.63 -34.44 -0.30 -13.19 16 12 H 0.06 1.49 7.82 -52.49 -0.41 1.08 16 13 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 14 N -0.87 -24.49 12.91 55.43 0.72 -23.77 16 15 Si 0.89 20.70 29.55 -169.99 -5.02 15.67 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 18 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 19 C -0.21 -4.36 9.96 -26.69 -0.27 -4.63 16 20 C -0.15 -3.37 9.41 -26.69 -0.25 -3.63 16 21 C -0.07 -0.68 0.59 -154.50 -0.09 -0.77 16 22 C -0.14 -1.25 8.32 37.16 0.31 -0.94 16 23 C -0.14 -1.21 8.22 37.16 0.31 -0.90 16 24 C -0.14 -1.30 8.05 37.16 0.30 -1.00 16 25 H 0.21 2.14 7.80 -54.09 -0.42 1.72 16 26 H 0.39 4.85 6.67 -40.82 -0.27 4.57 16 27 H 0.40 7.10 8.38 -40.82 -0.34 6.76 16 28 H 0.07 1.87 8.14 -51.93 -0.42 1.44 16 29 H 0.03 0.80 8.09 -51.93 -0.42 0.38 16 30 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 31 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 32 H 0.08 1.58 8.14 -51.93 -0.42 1.15 16 33 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 34 H 0.06 1.43 8.14 -51.93 -0.42 1.01 16 35 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.06 0.57 7.45 -51.93 -0.39 0.19 16 38 H 0.06 0.56 7.23 -51.93 -0.38 0.18 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.06 0.51 6.50 -51.93 -0.34 0.17 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.06 0.60 7.23 -51.93 -0.38 0.23 16 LS Contribution 359.23 15.07 5.41 5.41 Total: -1.00 -30.98 359.23 -7.53 -38.51 By element: Atomic # 1 Polarization: 18.30 SS G_CDS: -7.10 Total: 11.20 kcal Atomic # 6 Polarization: -6.04 SS G_CDS: -1.00 Total: -7.04 kcal Atomic # 7 Polarization: -49.77 SS G_CDS: 0.10 Total: -49.68 kcal Atomic # 8 Polarization: -14.16 SS G_CDS: 0.08 Total: -14.07 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.67 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.98 -7.53 -38.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491230728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.176 kcal (2) G-P(sol) polarization free energy of solvation -30.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.195 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.508 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds