Wall clock time and date at job start Tue Mar 31 2020 00:52:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 H 1.09007 * 109.46887 * 176.25078 * 3 2 1 5 5 N 1.46502 * 109.47353 * 56.25406 * 3 2 1 6 6 C 1.34777 * 119.99974 * 84.99763 * 5 3 2 7 7 O 1.21589 * 119.99994 * 0.02562 * 6 5 3 8 8 N 1.34772 * 119.99956 * 180.02562 * 6 5 3 9 9 C 1.46497 * 120.00440 * 179.72524 * 8 6 5 10 10 C 1.52996 * 109.47656 * 178.57993 * 9 8 6 11 11 C 1.50697 * 115.54802 * 65.14134 * 10 9 8 12 12 H 1.07995 * 120.00253 * 265.47861 * 11 10 9 13 13 C 1.37881 * 120.00063 * 85.48196 * 11 10 9 14 14 N 1.31516 * 119.99797 * 353.65542 * 13 11 10 15 15 Si 1.86794 * 120.00140 * 173.65276 * 13 11 10 16 16 H 1.48497 * 109.47376 * 89.99796 * 15 13 11 17 17 H 1.48501 * 109.47246 * 209.99805 * 15 13 11 18 18 H 1.48494 * 109.47267 * 329.99918 * 15 13 11 19 19 C 1.53004 * 117.49804 * 279.47475 * 10 9 8 20 20 C 1.53000 * 117.50114 * 210.81549 * 10 9 8 21 21 C 1.52997 * 109.46975 * 296.25028 * 3 2 1 22 22 C 1.53009 * 109.46963 * 180.02562 * 21 3 2 23 23 C 1.53000 * 109.47535 * 300.00006 * 21 3 2 24 24 C 1.53002 * 109.47193 * 60.00735 * 21 3 2 25 25 H 4.18736 * 15.03961 * 359.97438 * 4 2 1 26 26 H 0.96999 * 119.99480 * 265.00333 * 5 3 2 27 27 H 0.97006 * 119.99991 * 359.97438 * 8 6 5 28 28 H 1.08998 * 109.47195 * 298.58663 * 9 8 6 29 29 H 1.09005 * 109.46891 * 58.57441 * 9 8 6 30 30 H 0.97000 * 119.99892 * 185.07859 * 14 13 11 31 31 H 1.09000 * 117.49908 * 359.97438 * 19 10 9 32 32 H 1.08996 * 117.49422 * 145.01872 * 19 10 9 33 33 H 1.08998 * 117.49824 * 214.98206 * 20 10 9 34 34 H 1.09000 * 117.49683 * 359.97314 * 20 10 9 35 35 H 1.08997 * 109.47178 * 60.00060 * 22 21 3 36 36 H 1.08992 * 109.46923 * 180.02562 * 22 21 3 37 37 H 1.09003 * 109.46716 * 299.99787 * 22 21 3 38 38 H 1.09003 * 109.46374 * 59.99816 * 23 21 3 39 39 H 1.08999 * 109.46879 * 180.02562 * 23 21 3 40 40 H 1.08997 * 109.47176 * 300.00290 * 23 21 3 41 41 H 1.08992 * 109.47361 * 59.99355 * 24 21 3 42 42 H 1.08991 * 109.47064 * 180.02562 * 24 21 3 43 43 H 1.09006 * 109.46535 * 299.99682 * 24 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 1 3.0088 1.0264 -0.0672 5 7 3.1347 -0.7664 -1.1485 6 6 3.2631 -0.1713 -2.3509 7 8 2.9738 1.0023 -2.4824 8 7 3.7122 -0.8771 -3.4076 9 6 3.8462 -0.2319 -4.7160 10 6 4.4051 -1.2366 -5.7254 11 6 3.5133 -2.4112 -6.0351 12 1 3.6363 -3.3394 -5.4969 13 6 2.5403 -2.3009 -7.0058 14 7 2.3064 -1.1378 -7.5732 15 14 1.5542 -3.8035 -7.5148 16 1 0.3422 -3.9120 -6.6637 17 1 1.1498 -3.6715 -8.9376 18 1 2.3868 -5.0218 -7.3479 19 6 5.9158 -1.4791 -5.7182 20 6 5.2724 -0.6893 -6.8608 21 6 3.1562 -0.6371 1.2937 22 6 4.6863 -0.6359 1.2940 23 6 2.6459 0.1640 2.4932 24 6 2.6470 -2.0768 1.3880 25 1 -1.0500 -0.0011 -0.0004 26 1 3.3658 -1.7026 -1.0435 27 1 3.9434 -1.8133 -3.3026 28 1 2.8690 0.1151 -5.0517 29 1 4.5248 0.6173 -4.6346 30 1 1.5737 -1.0434 -8.2019 31 1 6.5115 -0.9225 -4.9947 32 1 6.2645 -2.4881 -5.9380 33 1 5.1982 -1.1790 -7.8317 34 1 5.4444 0.3867 -6.8888 35 1 5.0488 0.3899 1.2270 36 1 5.0498 -1.0906 2.2154 37 1 5.0502 -1.2064 0.4395 38 1 1.5558 0.1635 2.4931 39 1 3.0098 -0.2902 3.4148 40 1 3.0087 1.1896 2.4260 41 1 3.0105 -2.6475 0.5335 42 1 3.0101 -2.5310 2.3098 43 1 1.5569 -2.0773 1.3879 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491230728.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:52:25 Heat of formation + Delta-G solvation = 15.970365 kcal Electronic energy + Delta-G solvation = -21957.170702 eV Core-core repulsion = 18810.652071 eV Total energy + Delta-G solvation = -3146.518631 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27927 -39.29482 -38.31733 -35.00869 -34.49657 -33.95427 -33.36601 -28.62560 -28.23743 -28.07080 -27.51996 -26.26786 -22.96742 -21.91404 -21.24353 -20.61261 -19.49133 -18.92227 -17.98784 -17.20033 -16.68643 -16.45069 -15.95847 -15.87331 -15.54685 -15.20458 -14.87419 -14.60594 -14.41491 -14.12541 -13.62342 -13.44683 -13.00502 -12.91567 -12.87150 -12.84055 -12.55620 -12.35266 -12.29993 -12.02577 -11.77239 -11.74041 -11.61087 -11.47910 -11.18415 -10.96370 -10.84417 -10.46443 -10.43884 -10.04536 -9.67392 -8.08984 -6.21932 1.41510 1.42401 1.44387 1.52660 1.88776 2.21513 2.24823 2.42887 3.19287 3.33198 3.41895 3.63599 3.75088 3.88968 4.08217 4.26257 4.45688 4.54535 4.57819 4.67153 4.74945 4.80062 4.82293 4.91403 5.00326 5.02323 5.03036 5.05499 5.09344 5.15557 5.28669 5.29793 5.42557 5.46678 5.50815 5.59872 5.62913 5.71286 5.79332 6.11211 6.37765 6.68278 6.84997 7.20458 7.47358 7.66155 8.98618 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.004409 C = 0.004076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.310071 B = 6349.181762 C = 6867.996189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.217 4.217 3 C 0.280 3.720 4 H 0.084 0.916 5 N -0.723 5.723 6 C 0.698 3.302 7 O -0.643 6.643 8 N -0.713 5.713 9 C 0.200 3.800 10 C 0.004 3.996 11 C -0.503 4.503 12 H 0.064 0.936 13 C 0.024 3.976 14 N -0.908 5.908 15 Si 0.949 3.051 16 H -0.282 1.282 17 H -0.290 1.290 18 H -0.262 1.262 19 C -0.173 4.173 20 C -0.159 4.159 21 C -0.061 4.061 22 C -0.140 4.140 23 C -0.138 4.138 24 C -0.143 4.143 25 H 0.242 0.758 26 H 0.409 0.591 27 H 0.407 0.593 28 H 0.023 0.977 29 H 0.034 0.966 30 H 0.258 0.742 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.081 0.919 37 H 0.056 0.944 38 H 0.052 0.948 39 H 0.082 0.918 40 H 0.056 0.944 41 H 0.056 0.944 42 H 0.080 0.920 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.667 -2.802 19.549 19.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.219 4.219 3 C 0.174 3.826 4 H 0.102 0.898 5 N -0.380 5.380 6 C 0.398 3.602 7 O -0.525 6.525 8 N -0.366 5.366 9 C 0.075 3.925 10 C 0.004 3.996 11 C -0.540 4.540 12 H 0.082 0.918 13 C -0.176 4.176 14 N -0.546 5.546 15 Si 0.775 3.225 16 H -0.208 1.208 17 H -0.216 1.216 18 H -0.186 1.186 19 C -0.210 4.210 20 C -0.197 4.197 21 C -0.061 4.061 22 C -0.197 4.197 23 C -0.196 4.196 24 C -0.200 4.200 25 H 0.258 0.742 26 H 0.247 0.753 27 H 0.242 0.758 28 H 0.041 0.959 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.107 0.893 32 H 0.105 0.895 33 H 0.082 0.918 34 H 0.088 0.912 35 H 0.071 0.929 36 H 0.100 0.900 37 H 0.075 0.925 38 H 0.071 0.929 39 H 0.101 0.899 40 H 0.075 0.925 41 H 0.075 0.925 42 H 0.099 0.901 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.390 -1.686 19.205 19.427 hybrid contribution -0.994 -1.035 -0.958 1.725 sum 1.395 -2.721 18.247 18.502 Atomic orbital electron populations 1.25672 0.96828 0.99861 0.99067 1.23911 0.95585 1.01116 1.01263 1.17809 0.82840 0.96354 0.85564 0.89781 1.45014 1.70979 1.14974 1.07020 1.16210 0.78081 0.84691 0.81269 1.90846 1.59354 1.17321 1.84993 1.44901 1.69327 1.14531 1.07862 1.20401 0.98097 0.93381 0.80632 1.19053 0.89020 0.96064 0.95511 1.20648 1.16968 0.97165 1.19243 0.91783 1.25707 0.98229 0.97924 0.95789 1.70109 1.29800 1.24819 1.29870 0.85694 0.78932 0.80737 0.77101 1.20842 1.21559 1.18593 1.23001 0.96397 1.00444 1.01196 1.22430 1.06126 0.97250 0.93907 1.20762 0.96892 0.96670 0.91814 1.21873 0.92435 1.02330 1.03067 1.21843 1.01094 0.99816 0.96811 1.21915 1.01033 0.94131 1.02924 0.74180 0.75260 0.75812 0.95871 0.94819 0.93293 0.89252 0.89453 0.91761 0.91171 0.92853 0.90015 0.92481 0.92898 0.89935 0.92451 0.92473 0.90062 0.93101 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -5.11 19.25 74.32 1.43 -3.68 16 2 C -0.22 -6.27 10.29 31.12 0.32 -5.95 16 3 C 0.28 7.44 1.72 43.18 0.07 7.52 16 4 H 0.08 2.61 7.58 -2.38 -0.02 2.59 16 5 N -0.72 -20.92 4.28 -466.56 -1.99 -22.92 16 6 C 0.70 27.48 8.51 179.06 1.52 29.01 16 7 O -0.64 -31.15 16.01 -4.00 -0.06 -31.22 16 8 N -0.71 -28.20 5.48 -478.55 -2.62 -30.82 16 9 C 0.20 9.42 5.50 86.38 0.48 9.89 16 10 C 0.00 0.20 1.38 -52.93 -0.07 0.13 16 11 C -0.50 -25.67 8.63 25.60 0.22 -25.45 16 12 H 0.06 3.14 7.82 -2.91 -0.02 3.11 16 13 C 0.02 1.29 5.39 84.66 0.46 1.74 16 14 N -0.91 -52.01 12.91 21.45 0.28 -51.73 16 15 Si 0.95 42.45 29.55 68.60 2.03 44.48 16 16 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 17 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 18 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 19 C -0.17 -6.82 9.96 30.62 0.30 -6.52 16 20 C -0.16 -7.25 9.41 30.62 0.29 -6.97 16 21 C -0.06 -1.08 0.59 -52.18 -0.03 -1.11 16 22 C -0.14 -2.18 8.32 71.99 0.60 -1.58 16 23 C -0.14 -2.13 8.22 71.98 0.59 -1.54 16 24 C -0.14 -2.24 8.05 71.98 0.58 -1.66 16 25 H 0.24 4.40 7.80 -4.42 -0.03 4.36 16 26 H 0.41 9.44 6.67 -92.71 -0.62 8.82 16 27 H 0.41 14.10 8.38 -92.70 -0.78 13.32 16 28 H 0.02 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.03 1.57 8.09 -2.38 -0.02 1.55 16 30 H 0.26 14.30 8.32 -92.71 -0.77 13.53 16 31 H 0.09 3.11 8.14 -2.39 -0.02 3.09 16 32 H 0.09 3.29 8.14 -2.39 -0.02 3.27 16 33 H 0.06 3.15 8.14 -2.39 -0.02 3.14 16 34 H 0.07 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 0.94 7.45 -2.39 -0.02 0.92 16 38 H 0.05 0.90 7.23 -2.39 -0.02 0.88 16 39 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.06 0.88 6.50 -2.39 -0.02 0.86 16 42 H 0.08 0.94 8.14 -2.39 -0.02 0.93 16 43 H 0.05 0.91 7.23 -2.38 -0.02 0.89 16 Total: -1.00 -67.74 359.23 3.98 -63.76 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.40 Total: 34.60 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: 6.76 Total: -6.16 kcal Atomic # 7 Polarization: -101.13 SS G_CDS: -4.34 Total: -105.47 kcal Atomic # 8 Polarization: -31.15 SS G_CDS: -0.06 Total: -31.22 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -67.74 3.98 -63.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491230728.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.734 kcal (2) G-P(sol) polarization free energy of solvation -67.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.763 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds