Wall clock time and date at job start Tue Mar 31 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33404 * 120.00303 * 2 1 4 4 C 1.46341 * 119.99931 * 180.02562 * 3 2 1 5 5 C 1.35178 * 120.00030 * 115.06252 * 4 3 2 6 6 C 1.46261 * 120.00013 * 353.30304 * 5 4 3 7 7 O 1.21717 * 119.99818 * 354.41490 * 6 5 4 8 8 N 1.34779 * 119.99955 * 174.42198 * 6 5 4 9 9 C 1.46963 * 120.59392 * 174.80628 * 8 6 5 10 10 C 1.53364 * 108.63566 * 235.20386 * 9 8 6 11 11 N 1.46960 * 108.63697 * 310.57364 * 10 9 8 12 12 C 1.36934 * 120.59906 * 235.23039 * 11 10 9 13 13 H 1.08002 * 120.00105 * 34.15113 * 12 11 10 14 14 C 1.38814 * 120.00322 * 214.15605 * 12 11 10 15 15 N 1.31619 * 119.99777 * 6.95106 * 14 12 11 16 16 Si 1.86799 * 120.00233 * 186.95214 * 14 12 11 17 17 H 1.48492 * 109.46945 * 89.99883 * 16 14 12 18 18 H 1.48499 * 109.47040 * 209.99851 * 16 14 12 19 19 H 1.48501 * 109.46939 * 329.99565 * 16 14 12 20 20 C 1.46963 * 118.80864 * 55.22605 * 11 10 9 21 21 C 1.46958 * 120.59234 * 354.78204 * 8 6 5 22 22 C 1.50702 * 120.00070 * 359.97438 * 3 2 1 23 23 C 1.52998 * 109.46894 * 95.36303 * 22 3 2 24 24 H 1.08998 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47040 * 300.00486 * 1 2 3 26 26 H 1.09002 * 109.46891 * 59.99959 * 1 2 3 27 27 H 1.08004 * 119.99878 * 180.02562 * 2 1 3 28 28 H 1.07998 * 119.99878 * 295.05992 * 4 3 2 29 29 H 1.07998 * 120.00127 * 173.29457 * 5 4 3 30 30 H 1.09008 * 109.60755 * 354.94641 * 9 8 6 31 31 H 1.08995 * 109.61138 * 115.45646 * 9 8 6 32 32 H 1.09006 * 109.60859 * 70.32153 * 10 9 8 33 33 H 1.09002 * 109.61342 * 190.82858 * 10 9 8 34 34 H 0.96997 * 120.00621 * 179.97438 * 15 14 12 35 35 H 1.09009 * 109.61259 * 185.03065 * 20 11 10 36 36 H 1.09000 * 109.75477 * 64.60660 * 20 11 10 37 37 H 1.09006 * 109.61192 * 244.54031 * 21 8 6 38 38 H 1.08991 * 109.61567 * 5.05236 * 21 8 6 39 39 H 1.08997 * 109.47207 * 215.36461 * 22 3 2 40 40 H 1.09000 * 109.46896 * 335.36390 * 22 3 2 41 41 H 1.09005 * 109.46986 * 299.99939 * 23 22 3 42 42 H 1.08993 * 109.47216 * 59.99964 * 23 22 3 43 43 H 1.08999 * 109.46835 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1553 0.0000 4 6 3.6375 1.1552 -0.0006 5 6 4.3130 1.6513 -1.0612 6 6 3.5887 2.0525 -2.2669 7 8 2.3924 1.8462 -2.3551 8 7 4.2461 2.6506 -3.2802 9 6 3.5569 2.9564 -4.5416 10 6 4.3379 2.3146 -5.6949 11 7 5.7566 2.6730 -5.5581 12 6 6.4243 3.2811 -6.5874 13 1 5.9057 3.9752 -7.2322 14 6 7.7677 3.0054 -6.8022 15 7 8.3650 2.0608 -6.1070 16 14 8.7278 3.9748 -8.0781 17 1 9.3314 5.1717 -7.4391 18 1 9.8028 3.1203 -8.6432 19 1 7.8125 4.4031 -9.1662 20 6 6.4458 2.3672 -4.2967 21 6 5.6647 3.0089 -3.1432 22 6 1.4206 2.4604 -0.0006 23 6 1.2819 2.9698 1.4354 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9354 -0.0004 28 1 4.1777 0.7588 0.8464 29 1 5.3875 1.7515 -1.0182 30 1 2.5457 2.5501 -4.5139 31 1 3.5160 4.0363 -4.6837 32 1 4.2286 1.2309 -5.6524 33 1 3.9569 2.6861 -6.6462 34 1 9.3036 1.8678 -6.2572 35 1 7.4570 2.7734 -4.3243 36 1 6.4893 1.2876 -4.1529 37 1 5.7740 4.0927 -3.1857 38 1 6.0457 2.6375 -2.1920 39 1 1.9650 3.1939 -0.5953 40 1 0.4302 2.3080 -0.4293 41 1 0.7375 2.2362 2.0301 42 1 2.2723 3.1222 1.8642 43 1 0.7366 3.9136 1.4350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000493402498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:08 Heat of formation + Delta-G solvation = 23.086316 kcal Electronic energy + Delta-G solvation = -22183.924303 eV Core-core repulsion = 19037.714243 eV Total energy + Delta-G solvation = -3146.210060 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.71616 -37.45413 -36.23137 -33.78690 -32.53881 -31.22085 -31.19109 -30.12311 -27.42606 -26.44650 -23.96629 -23.29970 -22.93158 -21.93569 -20.03829 -18.67566 -17.77414 -16.97053 -16.18721 -15.66028 -14.86756 -14.82589 -14.58173 -14.25887 -13.80791 -13.54014 -13.45240 -13.31021 -13.23876 -12.91968 -12.75495 -12.48994 -12.17773 -11.91471 -11.69425 -11.48911 -11.21535 -10.88535 -10.81686 -10.70065 -10.60716 -10.48979 -10.21365 -10.09882 -9.85058 -9.51228 -9.24252 -8.58955 -8.29043 -8.08592 -6.62476 -5.86182 -3.39313 1.33939 2.40056 3.32386 3.39428 3.40676 3.56767 3.70544 4.42194 4.82612 4.91560 5.08381 5.23712 5.28856 5.33169 5.34738 5.46465 5.53750 5.63351 5.71159 5.78538 5.83771 5.91453 5.94639 6.00122 6.04303 6.08683 6.17611 6.20226 6.30188 6.34585 6.39720 6.43677 6.50381 6.81095 6.83166 6.97093 7.02328 7.26513 7.51181 7.71029 8.00685 8.40025 8.67302 9.13231 9.72477 10.32732 11.20777 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038936 B = 0.003705 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.962456 B = 7556.268833 C = 7688.242163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.165 4.165 3 C -0.071 4.071 4 C -0.044 4.044 5 C -0.201 4.201 6 C 0.535 3.465 7 O -0.546 6.546 8 N -0.593 5.593 9 C 0.097 3.903 10 C 0.132 3.868 11 N -0.591 5.591 12 C -0.257 4.257 13 H 0.065 0.935 14 C 0.008 3.992 15 N -0.905 5.905 16 Si 0.907 3.093 17 H -0.286 1.286 18 H -0.290 1.290 19 H -0.278 1.278 20 C 0.158 3.842 21 C 0.078 3.922 22 C -0.070 4.070 23 C -0.148 4.148 24 H 0.053 0.947 25 H 0.059 0.941 26 H 0.066 0.934 27 H 0.103 0.897 28 H 0.130 0.870 29 H 0.133 0.867 30 H 0.081 0.919 31 H 0.060 0.940 32 H 0.022 0.978 33 H 0.065 0.935 34 H 0.256 0.744 35 H 0.100 0.900 36 H 0.023 0.977 37 H 0.062 0.938 38 H 0.073 0.927 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.051 0.949 42 H 0.051 0.949 43 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.818 -0.365 13.670 16.834 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.183 4.183 3 C -0.072 4.072 4 C -0.064 4.064 5 C -0.222 4.222 6 C 0.325 3.675 7 O -0.427 6.427 8 N -0.324 5.324 9 C -0.027 4.027 10 C 0.005 3.995 11 N -0.314 5.314 12 C -0.386 4.386 13 H 0.083 0.917 14 C -0.191 4.191 15 N -0.549 5.549 16 Si 0.737 3.263 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.203 1.203 20 C 0.031 3.969 21 C -0.046 4.046 22 C -0.107 4.107 23 C -0.205 4.205 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.085 0.915 27 H 0.121 0.879 28 H 0.147 0.853 29 H 0.151 0.849 30 H 0.099 0.901 31 H 0.078 0.922 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.066 0.934 35 H 0.118 0.882 36 H 0.041 0.959 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.070 0.930 42 H 0.070 0.930 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.245 -0.509 13.543 16.989 hybrid contribution 0.982 0.366 -0.765 1.298 sum -9.263 -0.143 12.778 15.783 Atomic orbital electron populations 1.20728 0.93286 1.01437 1.01613 1.22956 0.95717 0.96489 1.03184 1.20216 0.92089 0.95460 0.99390 1.22381 0.93804 0.93505 0.96670 1.23298 1.00623 1.03965 0.94283 1.18321 0.86959 0.78334 0.83857 1.90764 1.14395 1.56530 1.80971 1.47968 1.11997 1.58232 1.14227 1.22166 0.96568 0.99886 0.84058 1.21320 0.86397 0.96476 0.95342 1.43906 1.05675 1.69724 1.12127 1.19194 0.93253 1.18400 1.07790 0.91715 1.25272 0.98573 0.96859 0.98439 1.69921 1.11184 1.31219 1.42565 0.86221 0.79640 0.79107 0.81352 1.21315 1.21598 1.20336 1.21198 0.96594 0.96600 0.82464 1.22756 0.80388 1.00311 1.01190 1.20451 1.00112 0.94208 0.95920 1.21774 1.01437 1.00445 0.96857 0.92761 0.92219 0.91532 0.87852 0.85282 0.84939 0.90092 0.92199 0.95958 0.91618 0.93430 0.88171 0.95916 0.91960 0.90882 0.91369 0.91092 0.92954 0.92950 0.92871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.24 8.84 36.00 0.32 -0.92 16 2 C -0.17 -2.09 9.98 -36.00 -0.36 -2.45 16 3 C -0.07 -0.95 2.97 -103.05 -0.31 -1.26 16 4 C -0.04 -0.55 9.66 -37.41 -0.36 -0.92 16 5 C -0.20 -2.90 9.31 -37.45 -0.35 -3.25 16 6 C 0.53 9.49 6.94 -13.04 -0.09 9.40 16 7 O -0.55 -10.53 12.05 5.17 0.06 -10.46 16 8 N -0.59 -10.99 2.95 -174.19 -0.51 -11.51 16 9 C 0.10 1.84 6.58 -3.60 -0.02 1.81 16 10 C 0.13 2.81 6.67 -3.60 -0.02 2.79 16 11 N -0.59 -14.56 2.95 -172.04 -0.51 -15.07 16 12 C -0.26 -6.86 9.56 -15.06 -0.14 -7.00 16 13 H 0.07 1.70 7.84 -52.49 -0.41 1.29 16 14 C 0.01 0.20 5.12 -17.43 -0.09 0.11 16 15 N -0.90 -25.38 11.02 55.49 0.61 -24.77 16 16 Si 0.91 21.10 29.56 -169.99 -5.02 16.07 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 20 C 0.16 3.61 5.44 -3.60 -0.02 3.59 16 21 C 0.08 1.42 6.51 -3.60 -0.02 1.39 16 22 C -0.07 -0.91 4.53 -27.88 -0.13 -1.03 16 23 C -0.15 -1.51 9.89 37.16 0.37 -1.15 16 24 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.06 0.57 7.88 -51.93 -0.41 0.16 16 26 H 0.07 0.80 7.42 -51.93 -0.39 0.41 16 27 H 0.10 1.25 8.05 -52.48 -0.42 0.82 16 28 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.13 1.68 5.90 -52.49 -0.31 1.37 16 30 H 0.08 1.49 7.02 -51.92 -0.36 1.13 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 32 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.07 1.34 7.93 -51.93 -0.41 0.93 16 34 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.10 2.51 6.11 -51.92 -0.32 2.20 16 36 H 0.02 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 38 H 0.07 1.12 5.31 -51.93 -0.28 0.84 16 39 H 0.07 1.03 6.62 -51.93 -0.34 0.68 16 40 H 0.07 0.94 6.32 -51.93 -0.33 0.61 16 41 H 0.05 0.49 7.92 -51.93 -0.41 0.08 16 42 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 LS Contribution 339.52 15.07 5.12 5.12 Total: -1.00 -29.88 339.52 -8.39 -38.27 By element: Atomic # 1 Polarization: 8.12 SS G_CDS: -6.91 Total: 1.22 kcal Atomic # 6 Polarization: 2.35 SS G_CDS: -1.23 Total: 1.12 kcal Atomic # 7 Polarization: -50.93 SS G_CDS: -0.41 Total: -51.34 kcal Atomic # 8 Polarization: -10.53 SS G_CDS: 0.06 Total: -10.46 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.07 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.88 -8.39 -38.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493402498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.360 kcal (2) G-P(sol) polarization free energy of solvation -29.880 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds