Wall clock time and date at job start Tue Mar 31 2020 00:30:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.33404 * 120.00303 * 2 1 4 4 C 1.46341 * 119.99931 * 180.02562 * 3 2 1 5 5 C 1.35178 * 120.00030 * 115.06252 * 4 3 2 6 6 C 1.46261 * 120.00013 * 353.30304 * 5 4 3 7 7 O 1.21717 * 119.99818 * 354.41490 * 6 5 4 8 8 N 1.34779 * 119.99955 * 174.42198 * 6 5 4 9 9 C 1.46963 * 120.59392 * 174.80628 * 8 6 5 10 10 C 1.53364 * 108.63566 * 235.20386 * 9 8 6 11 11 N 1.46960 * 108.63697 * 310.57364 * 10 9 8 12 12 C 1.36934 * 120.59906 * 235.23039 * 11 10 9 13 13 H 1.08002 * 120.00105 * 34.15113 * 12 11 10 14 14 C 1.38814 * 120.00322 * 214.15605 * 12 11 10 15 15 N 1.31619 * 119.99777 * 6.95106 * 14 12 11 16 16 Si 1.86799 * 120.00233 * 186.95214 * 14 12 11 17 17 H 1.48492 * 109.46945 * 89.99883 * 16 14 12 18 18 H 1.48499 * 109.47040 * 209.99851 * 16 14 12 19 19 H 1.48501 * 109.46939 * 329.99565 * 16 14 12 20 20 C 1.46963 * 118.80864 * 55.22605 * 11 10 9 21 21 C 1.46958 * 120.59234 * 354.78204 * 8 6 5 22 22 C 1.50702 * 120.00070 * 359.97438 * 3 2 1 23 23 C 1.52998 * 109.46894 * 95.36303 * 22 3 2 24 24 H 1.08998 * 109.47158 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.47040 * 300.00486 * 1 2 3 26 26 H 1.09002 * 109.46891 * 59.99959 * 1 2 3 27 27 H 1.08004 * 119.99878 * 180.02562 * 2 1 3 28 28 H 1.07998 * 119.99878 * 295.05992 * 4 3 2 29 29 H 1.07998 * 120.00127 * 173.29457 * 5 4 3 30 30 H 1.09008 * 109.60755 * 354.94641 * 9 8 6 31 31 H 1.08995 * 109.61138 * 115.45646 * 9 8 6 32 32 H 1.09006 * 109.60859 * 70.32153 * 10 9 8 33 33 H 1.09002 * 109.61342 * 190.82858 * 10 9 8 34 34 H 0.96997 * 120.00621 * 179.97438 * 15 14 12 35 35 H 1.09009 * 109.61259 * 185.03065 * 20 11 10 36 36 H 1.09000 * 109.75477 * 64.60660 * 20 11 10 37 37 H 1.09006 * 109.61192 * 244.54031 * 21 8 6 38 38 H 1.08991 * 109.61567 * 5.05236 * 21 8 6 39 39 H 1.08997 * 109.47207 * 215.36461 * 22 3 2 40 40 H 1.09000 * 109.46896 * 335.36390 * 22 3 2 41 41 H 1.09005 * 109.46986 * 299.99939 * 23 22 3 42 42 H 1.08993 * 109.47216 * 59.99964 * 23 22 3 43 43 H 1.08999 * 109.46835 * 180.02562 * 23 22 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1741 1.1553 0.0000 4 6 3.6375 1.1552 -0.0006 5 6 4.3130 1.6513 -1.0612 6 6 3.5887 2.0525 -2.2669 7 8 2.3924 1.8462 -2.3551 8 7 4.2461 2.6506 -3.2802 9 6 3.5569 2.9564 -4.5416 10 6 4.3379 2.3146 -5.6949 11 7 5.7566 2.6730 -5.5581 12 6 6.4243 3.2811 -6.5874 13 1 5.9057 3.9752 -7.2322 14 6 7.7677 3.0054 -6.8022 15 7 8.3650 2.0608 -6.1070 16 14 8.7278 3.9748 -8.0781 17 1 9.3314 5.1717 -7.4391 18 1 9.8028 3.1203 -8.6432 19 1 7.8125 4.4031 -9.1662 20 6 6.4458 2.3672 -4.2967 21 6 5.6647 3.0089 -3.1432 22 6 1.4206 2.4604 -0.0006 23 6 1.2819 2.9698 1.4354 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 2.0470 -0.9354 -0.0004 28 1 4.1777 0.7588 0.8464 29 1 5.3875 1.7515 -1.0182 30 1 2.5457 2.5501 -4.5139 31 1 3.5160 4.0363 -4.6837 32 1 4.2286 1.2309 -5.6524 33 1 3.9569 2.6861 -6.6462 34 1 9.3036 1.8678 -6.2572 35 1 7.4570 2.7734 -4.3243 36 1 6.4893 1.2876 -4.1529 37 1 5.7740 4.0927 -3.1857 38 1 6.0457 2.6375 -2.1920 39 1 1.9650 3.1939 -0.5953 40 1 0.4302 2.3080 -0.4293 41 1 0.7375 2.2362 2.0301 42 1 2.2723 3.1222 1.8642 43 1 0.7366 3.9136 1.4350 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000493402498.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:30:08 Heat of formation + Delta-G solvation = 7.273671 kcal Electronic energy + Delta-G solvation = -22184.609991 eV Core-core repulsion = 19037.714243 eV Total energy + Delta-G solvation = -3146.895748 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.10254 -38.83196 -37.55296 -35.51593 -33.77240 -32.93365 -32.09066 -31.79143 -28.95415 -27.71113 -25.63546 -24.70190 -24.08820 -23.37614 -21.56104 -20.04758 -19.23207 -18.15464 -17.88805 -17.05675 -16.63630 -16.13832 -15.88571 -15.52873 -15.34191 -15.18729 -14.95391 -14.71808 -14.39829 -13.98516 -13.94273 -13.79120 -13.31866 -13.16842 -12.97145 -12.85594 -12.71941 -12.54524 -12.42885 -12.22604 -12.00962 -11.91427 -11.75621 -11.67182 -11.57295 -10.76089 -10.58521 -10.44512 -9.72612 -9.23670 -8.57098 -7.88316 -5.46040 0.24736 1.38605 1.48608 1.49341 1.58347 2.15351 2.40113 2.50561 3.27487 3.59109 3.73584 3.85747 4.10304 4.24447 4.26845 4.33533 4.38153 4.47162 4.52574 4.56147 4.61915 4.68780 4.76874 4.80750 4.83173 4.84286 4.93413 5.05265 5.11406 5.13859 5.18555 5.22701 5.30620 5.41180 5.42995 5.60023 5.61617 5.71287 5.84803 6.02383 6.39143 6.59141 7.12352 7.28961 7.76716 8.33212 9.15581 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.038936 B = 0.003705 C = 0.003641 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 718.962456 B = 7556.268833 C = 7688.242163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.167 4.167 3 C -0.094 4.094 4 C -0.018 4.018 5 C -0.227 4.227 6 C 0.531 3.469 7 O -0.566 6.566 8 N -0.602 5.602 9 C 0.109 3.891 10 C 0.133 3.867 11 N -0.609 5.609 12 C -0.270 4.270 13 H 0.066 0.934 14 C -0.041 4.041 15 N -0.933 5.933 16 Si 0.972 3.028 17 H -0.281 1.281 18 H -0.295 1.295 19 H -0.271 1.271 20 C 0.165 3.835 21 C 0.094 3.906 22 C -0.066 4.066 23 C -0.141 4.141 24 H 0.067 0.933 25 H 0.074 0.926 26 H 0.051 0.949 27 H 0.109 0.891 28 H 0.166 0.834 29 H 0.151 0.849 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.253 0.747 35 H 0.075 0.925 36 H -0.002 1.002 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.043 0.957 40 H 0.061 0.939 41 H 0.063 0.937 42 H 0.057 0.943 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.253 -0.082 15.296 18.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.185 4.185 3 C -0.094 4.094 4 C -0.038 4.038 5 C -0.247 4.247 6 C 0.324 3.676 7 O -0.448 6.448 8 N -0.334 5.334 9 C -0.015 4.015 10 C 0.007 3.993 11 N -0.333 5.333 12 C -0.400 4.400 13 H 0.084 0.916 14 C -0.237 4.237 15 N -0.578 5.578 16 Si 0.800 3.200 17 H -0.207 1.207 18 H -0.221 1.221 19 H -0.196 1.196 20 C 0.039 3.961 21 C -0.029 4.029 22 C -0.103 4.103 23 C -0.198 4.198 24 H 0.086 0.914 25 H 0.092 0.908 26 H 0.070 0.930 27 H 0.127 0.873 28 H 0.184 0.816 29 H 0.168 0.832 30 H 0.103 0.897 31 H 0.083 0.917 32 H 0.025 0.975 33 H 0.089 0.911 34 H 0.062 0.938 35 H 0.093 0.907 36 H 0.016 0.984 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.061 0.939 40 H 0.080 0.920 41 H 0.082 0.918 42 H 0.076 0.924 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.707 -0.220 15.186 18.582 hybrid contribution 0.999 0.194 -1.236 1.601 sum -9.708 -0.026 13.950 16.996 Atomic orbital electron populations 1.20741 0.92292 1.02370 1.01552 1.23208 0.96721 0.96509 1.02090 1.20437 0.92763 0.95791 1.00431 1.22806 0.93625 0.90595 0.96746 1.23253 1.01343 1.06532 0.93621 1.18883 0.86919 0.77354 0.84470 1.90750 1.15387 1.57156 1.81548 1.48030 1.12000 1.58956 1.14396 1.21933 0.96193 0.99844 0.83567 1.21359 0.85318 0.95709 0.96935 1.44170 1.06754 1.69861 1.12536 1.19493 0.93737 1.18457 1.08281 0.91645 1.25993 0.99462 0.97925 1.00352 1.70083 1.11141 1.32687 1.43922 0.85207 0.78014 0.77681 0.79120 1.20727 1.22103 1.19572 1.21016 0.96178 0.95226 0.83724 1.22521 0.79786 1.00031 1.00601 1.20381 0.99138 0.93598 0.97213 1.21727 1.02067 1.00997 0.95058 0.91385 0.90766 0.93012 0.87278 0.81648 0.83196 0.89718 0.91670 0.97547 0.91098 0.93813 0.90659 0.98397 0.91696 0.87505 0.93861 0.92011 0.91823 0.92435 0.92166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.26 8.84 71.24 0.63 -1.63 16 2 C -0.17 -3.89 9.98 24.59 0.25 -3.64 16 3 C -0.09 -2.32 2.97 -18.85 -0.06 -2.37 16 4 C -0.02 -0.41 9.66 23.67 0.23 -0.18 16 5 C -0.23 -6.08 9.31 23.65 0.22 -5.86 16 6 C 0.53 18.36 6.94 86.33 0.60 18.96 16 7 O -0.57 -21.59 12.05 -4.40 -0.05 -21.64 16 8 N -0.60 -21.97 2.95 -823.23 -2.43 -24.40 16 9 C 0.11 4.10 6.58 86.41 0.57 4.67 16 10 C 0.13 5.77 6.67 86.41 0.58 6.35 16 11 N -0.61 -30.46 2.95 -698.20 -2.06 -32.52 16 12 C -0.27 -14.54 9.56 84.03 0.80 -13.73 16 13 H 0.07 3.44 7.84 -2.91 -0.02 3.42 16 14 C -0.04 -2.24 5.12 84.86 0.43 -1.80 16 15 N -0.93 -53.32 11.02 21.65 0.24 -53.08 16 16 Si 0.97 43.58 29.56 68.60 2.03 45.61 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 19 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 20 C 0.16 7.65 5.44 86.42 0.47 8.12 16 21 C 0.09 3.37 6.51 86.42 0.56 3.93 16 22 C -0.07 -1.63 4.53 29.85 0.14 -1.50 16 23 C -0.14 -2.58 9.89 71.98 0.71 -1.87 16 24 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.07 1.26 7.88 -2.39 -0.02 1.24 16 26 H 0.05 1.20 7.42 -2.39 -0.02 1.18 16 27 H 0.11 2.38 8.05 -2.91 -0.02 2.35 16 28 H 0.17 2.48 8.06 -2.91 -0.02 2.45 16 29 H 0.15 3.40 5.90 -2.91 -0.02 3.38 16 30 H 0.08 3.11 7.02 -2.38 -0.02 3.10 16 31 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 32 H 0.01 0.30 8.14 -2.38 -0.02 0.28 16 33 H 0.07 2.93 7.93 -2.39 -0.02 2.91 16 34 H 0.25 13.96 8.31 -92.71 -0.77 13.19 16 35 H 0.08 3.87 6.11 -2.38 -0.01 3.85 16 36 H 0.00 -0.11 8.14 -2.39 -0.02 -0.13 16 37 H 0.06 2.30 8.14 -2.38 -0.02 2.28 16 38 H 0.11 3.07 5.31 -2.39 -0.01 3.06 16 39 H 0.04 1.28 6.62 -2.39 -0.02 1.26 16 40 H 0.06 1.61 6.32 -2.39 -0.02 1.59 16 41 H 0.06 1.02 7.92 -2.38 -0.02 1.00 16 42 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 Total: -1.00 -64.77 339.52 4.83 -59.94 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: 0.98 Total: 16.66 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.13 Total: 9.43 kcal Atomic # 7 Polarization: -105.75 SS G_CDS: -4.25 Total: -110.00 kcal Atomic # 8 Polarization: -21.59 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -64.77 4.83 -59.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000493402498.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.210 kcal (2) G-P(sol) polarization free energy of solvation -64.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.936 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds