Wall clock time and date at job start Tue Mar 31 2020 00:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 113.53050 * 2 1 4 4 C 1.56565 * 114.56146 * 134.22018 * 2 1 3 5 5 H 1.09002 * 114.55447 * 315.12393 * 4 2 1 6 6 N 1.46901 * 114.56069 * 181.38421 * 4 2 1 7 7 C 1.46895 * 110.99994 * 96.93908 * 6 4 2 8 8 C 1.53006 * 109.46897 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.47315 * 54.99623 * 8 7 6 10 10 C 1.47200 * 109.47012 * 294.99682 * 8 7 6 11 11 N 6.21514 * 143.81311 * 133.11645 * 2 1 3 12 12 C 1.52999 * 109.46931 * 175.00051 * 8 7 6 13 13 C 1.50706 * 109.46787 * 184.99954 * 12 8 7 14 14 H 1.08001 * 119.99991 * 359.97438 * 13 12 8 15 15 C 1.37874 * 119.99808 * 179.97438 * 13 12 8 16 16 N 1.31520 * 120.00045 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47181 * 90.00169 * 17 15 13 19 19 H 1.48497 * 109.47295 * 209.99840 * 17 15 13 20 20 H 1.48501 * 109.47406 * 330.00226 * 17 15 13 21 21 C 1.50324 * 81.31650 * 68.27288 * 4 2 1 22 22 H 1.09000 * 114.28687 * 288.94654 * 21 4 2 23 23 C 1.51853 * 127.88449 * 133.34828 * 21 4 2 24 24 C 1.55787 * 102.16254 * 241.64570 * 23 21 4 25 25 O 1.45374 * 105.21979 * 6.10279 * 24 23 21 26 26 C 1.40077 * 103.90272 * 30.53131 * 25 24 23 27 27 H 1.08999 * 110.77285 * 66.09346 * 26 25 24 28 28 H 1.09003 * 109.46792 * 272.15121 * 1 2 3 29 29 H 1.08999 * 109.46977 * 32.14410 * 1 2 3 30 30 H 1.08993 * 109.47401 * 152.15090 * 1 2 3 31 31 H 1.08998 * 109.46888 * 194.21294 * 3 2 1 32 32 H 1.08994 * 109.47203 * 314.21870 * 3 2 1 33 33 H 1.08997 * 109.46494 * 74.21975 * 3 2 1 34 34 H 1.00897 * 110.99833 * 220.89098 * 6 4 2 35 35 H 1.09003 * 109.47424 * 299.99543 * 7 6 4 36 36 H 1.08996 * 109.47659 * 60.00054 * 7 6 4 37 37 H 1.08998 * 109.47057 * 304.99739 * 12 8 7 38 38 H 1.08990 * 109.47363 * 65.00155 * 12 8 7 39 39 H 0.96993 * 120.00263 * 179.97438 * 16 15 13 40 40 H 1.08997 * 110.86521 * 359.81323 * 23 21 4 41 41 H 1.09003 * 110.86749 * 123.48029 * 23 21 4 42 42 H 1.08990 * 110.25158 * 125.34939 * 24 23 21 43 43 H 1.09002 * 110.25184 * 247.36638 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1408 1.4028 0.0000 4 6 2.1807 -0.9931 1.0205 5 1 1.7300 -0.9828 2.0129 6 7 3.6494 -0.9701 1.0431 7 6 4.1458 -0.1128 2.1277 8 6 5.6758 -0.1136 2.1188 9 1 6.0336 0.1822 1.1326 10 6 6.1676 -1.4647 2.4343 11 7 6.5462 -2.5081 2.6786 12 6 6.1925 0.8747 3.1663 13 6 7.6940 0.9653 3.0740 14 1 8.2264 0.3765 2.3417 15 6 8.3878 1.7998 3.9244 16 7 9.6982 1.8785 3.8441 17 14 7.4668 2.8186 5.1904 18 1 7.3421 2.0455 6.4522 19 1 8.2128 4.0757 5.4519 20 1 6.1132 3.1446 4.6739 21 6 1.5861 -1.9979 0.0737 22 1 0.4986 -2.0615 0.1123 23 6 2.2498 -3.2296 -0.5165 24 6 2.2111 -2.9234 -2.0435 25 8 1.7035 -1.5652 -2.1476 26 6 2.1503 -0.9479 -0.9723 27 1 3.2376 -0.8707 -0.9654 28 1 -0.3633 0.0386 1.0270 29 1 -0.3633 0.8701 -0.5468 30 1 -0.3634 -0.9086 -0.4800 31 1 3.1992 1.3382 -0.2523 32 1 1.6288 2.0221 -0.7365 33 1 2.0296 1.8474 0.9889 34 1 4.0245 -1.9036 1.1197 35 1 3.7826 0.9046 1.9820 36 1 3.7875 -0.4929 3.0844 37 1 5.7573 1.8573 2.9845 38 1 5.9098 0.5305 4.1611 39 1 10.1863 2.4658 4.4421 40 1 3.2774 -3.3229 -0.1651 41 1 1.6766 -4.1277 -0.2860 42 1 3.2129 -2.9915 -2.4674 43 1 1.5384 -3.6155 -2.5501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000562188125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:36 Heat of formation + Delta-G solvation = 67.817260 kcal Electronic energy + Delta-G solvation = -22304.372408 eV Core-core repulsion = 19160.102027 eV Total energy + Delta-G solvation = -3144.270381 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.31488 -37.66776 -36.67003 -34.50426 -33.26455 -32.09181 -31.21421 -29.04491 -27.75010 -26.69735 -24.21934 -23.26539 -22.86176 -21.54071 -20.02293 -18.76095 -17.10580 -17.00550 -16.46839 -16.16148 -15.76886 -15.18506 -14.58505 -14.36138 -14.19737 -13.69130 -13.61654 -13.26035 -13.05896 -12.78505 -12.64154 -12.41797 -12.28908 -12.04167 -11.87875 -11.65022 -11.48811 -11.35483 -11.27118 -11.11959 -10.91096 -10.73376 -10.51532 -10.33250 -10.03256 -9.90840 -9.76831 -9.36872 -9.13470 -8.64368 -8.36211 -6.13273 -4.14313 3.07037 3.24553 3.32018 3.32848 3.45461 3.48778 3.76134 4.13127 4.24680 4.35652 4.63408 4.70295 4.71561 4.92388 4.94546 5.17429 5.19151 5.21430 5.30797 5.36301 5.40456 5.47246 5.52715 5.55543 5.69622 5.75240 5.76283 5.87483 5.92562 5.94429 5.98263 6.09688 6.17188 6.19871 6.30164 6.38359 6.87952 6.90784 6.96483 7.07602 7.19456 7.60165 8.27391 8.38933 8.89945 9.46361 10.99825 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.004275 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.621398 B = 6547.468905 C = 7168.942324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.044 4.044 3 C -0.137 4.137 4 C 0.091 3.909 5 H 0.066 0.934 6 N -0.669 5.669 7 C 0.063 3.937 8 C 0.017 3.983 9 H 0.117 0.883 10 C 0.236 3.764 11 N -0.467 5.467 12 C -0.004 4.004 13 C -0.529 4.529 14 H 0.074 0.926 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.877 3.123 18 H -0.277 1.277 19 H -0.286 1.286 20 H -0.262 1.262 21 C -0.208 4.208 22 H 0.120 0.880 23 C -0.137 4.137 24 C 0.053 3.947 25 O -0.367 6.367 26 C 0.039 3.961 27 H 0.121 0.879 28 H 0.060 0.940 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.053 0.947 33 H 0.058 0.942 34 H 0.345 0.655 35 H 0.096 0.904 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.019 0.981 39 H 0.265 0.735 40 H 0.075 0.925 41 H 0.070 0.930 42 H 0.063 0.937 43 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.249 -4.091 -8.251 22.244 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.045 4.045 3 C -0.194 4.194 4 C -0.019 4.019 5 H 0.084 0.916 6 N -0.301 5.301 7 C -0.067 4.067 8 C -0.005 4.005 9 H 0.135 0.865 10 C -0.081 4.081 11 N -0.144 5.144 12 C -0.043 4.043 13 C -0.567 4.567 14 H 0.092 0.908 15 C -0.131 4.131 16 N -0.534 5.534 17 Si 0.704 3.296 18 H -0.203 1.203 19 H -0.212 1.212 20 H -0.187 1.187 21 C -0.226 4.226 22 H 0.138 0.862 23 C -0.175 4.175 24 C -0.023 4.023 25 O -0.285 6.285 26 C -0.019 4.019 27 H 0.138 0.862 28 H 0.079 0.921 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.092 0.908 32 H 0.072 0.928 33 H 0.077 0.923 34 H 0.166 0.834 35 H 0.114 0.886 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.037 0.963 39 H 0.075 0.925 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.082 0.918 43 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -19.567 -5.019 -8.467 21.903 hybrid contribution -0.365 0.219 1.580 1.636 sum -19.933 -4.799 -6.887 21.628 Atomic orbital electron populations 1.21788 0.92484 1.02602 1.02013 1.21925 0.95187 0.94252 0.93137 1.21759 1.01916 0.94110 1.01578 1.22151 0.88360 0.95551 0.95853 0.91644 1.60464 1.05194 1.16634 1.47839 1.22224 0.93716 0.98931 0.91809 1.19081 0.92516 0.85042 1.03845 0.86548 1.29210 0.92491 0.94222 0.92143 1.81084 1.09270 1.13929 1.10083 1.19629 0.98033 0.93683 0.92909 1.21019 0.89228 1.26276 1.20140 0.90795 1.24987 0.94703 0.96406 0.96964 1.69904 1.06485 1.38499 1.38557 0.86820 0.80493 0.80072 0.82167 1.20330 1.21220 1.18669 1.24521 1.01276 0.95002 1.01820 0.86200 1.22265 1.01661 0.98011 0.95595 1.23944 0.99309 0.83316 0.95773 1.88279 1.75770 1.22843 1.41649 1.24577 0.99577 0.96580 0.81177 0.86174 0.92126 0.91913 0.91361 0.90790 0.92831 0.92288 0.83399 0.88574 0.94346 0.94220 0.96286 0.92535 0.90685 0.91091 0.91830 0.89830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.13 8.69 37.16 0.32 -0.80 16 2 C -0.04 -0.44 1.58 -166.66 -0.26 -0.70 16 3 C -0.14 -1.36 8.03 37.16 0.30 -1.06 16 4 C 0.09 0.93 3.96 -80.59 -0.32 0.61 16 5 H 0.07 0.66 8.05 -51.93 -0.42 0.24 16 6 N -0.67 -7.68 4.27 -120.97 -0.52 -8.20 16 7 C 0.06 0.80 4.92 -3.82 -0.02 0.78 16 8 C 0.02 0.29 2.42 -93.40 -0.23 0.06 16 9 H 0.12 1.90 8.14 -51.93 -0.42 1.48 16 10 C 0.24 4.53 12.98 -20.74 -0.27 4.26 16 11 N -0.47 -9.84 18.54 42.17 0.78 -9.06 16 12 C 0.00 -0.07 3.49 -27.88 -0.10 -0.17 16 13 C -0.53 -13.98 9.15 -34.44 -0.32 -14.29 16 14 H 0.07 2.15 7.84 -52.49 -0.41 1.74 16 15 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 16 N -0.90 -26.82 13.96 55.43 0.77 -26.04 16 17 Si 0.88 20.35 27.47 -169.99 -4.67 15.68 16 18 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 19 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 20 H -0.26 -5.59 6.54 56.52 0.37 -5.22 16 21 C -0.21 -2.06 4.23 -101.68 -0.43 -2.49 16 22 H 0.12 1.13 5.33 -51.93 -0.28 0.85 16 23 C -0.14 -1.30 6.73 -25.83 -0.17 -1.48 16 24 C 0.05 0.52 7.76 38.64 0.30 0.82 16 25 O -0.37 -4.57 11.41 -33.12 -0.38 -4.95 16 26 C 0.04 0.44 3.96 -38.93 -0.15 0.29 16 27 H 0.12 1.51 6.28 -51.93 -0.33 1.18 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.51 7.90 -51.93 -0.41 0.10 16 30 H 0.07 0.60 6.03 -51.93 -0.31 0.29 16 31 H 0.07 0.81 7.74 -51.93 -0.40 0.41 16 32 H 0.05 0.51 8.00 -51.93 -0.42 0.09 16 33 H 0.06 0.55 7.76 -51.93 -0.40 0.15 16 34 H 0.35 4.20 6.58 -39.29 -0.26 3.94 16 35 H 0.10 1.12 6.67 -51.93 -0.35 0.78 16 36 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.04 0.77 7.20 -51.93 -0.37 0.40 16 38 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 39 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 40 H 0.07 0.75 6.94 -51.93 -0.36 0.39 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.26 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -30.28 336.84 -7.19 -37.47 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -6.81 Total: 2.31 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.44 Total: -12.29 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 1.04 Total: -43.30 kcal Atomic # 8 Polarization: -4.57 SS G_CDS: -0.38 Total: -4.95 kcal Atomic # 14 Polarization: 20.35 SS G_CDS: -4.67 Total: 15.68 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.28 -7.19 -37.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562188125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.285 kcal (2) G-P(sol) polarization free energy of solvation -30.280 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.467 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds