Wall clock time and date at job start Tue Mar 31 2020 00:01:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53006 * 113.53050 * 2 1 4 4 C 1.56565 * 114.56146 * 134.22018 * 2 1 3 5 5 H 1.09002 * 114.55447 * 315.12393 * 4 2 1 6 6 N 1.46901 * 114.56069 * 181.38421 * 4 2 1 7 7 C 1.46895 * 110.99994 * 96.93908 * 6 4 2 8 8 C 1.53006 * 109.46897 * 180.02562 * 7 6 4 9 9 H 1.08998 * 109.47315 * 54.99623 * 8 7 6 10 10 C 1.47200 * 109.47012 * 294.99682 * 8 7 6 11 11 N 6.21514 * 143.81311 * 133.11645 * 2 1 3 12 12 C 1.52999 * 109.46931 * 175.00051 * 8 7 6 13 13 C 1.50706 * 109.46787 * 184.99954 * 12 8 7 14 14 H 1.08001 * 119.99991 * 359.97438 * 13 12 8 15 15 C 1.37874 * 119.99808 * 179.97438 * 13 12 8 16 16 N 1.31520 * 120.00045 * 179.97438 * 15 13 12 17 17 Si 1.86795 * 120.00219 * 359.97438 * 15 13 12 18 18 H 1.48504 * 109.47181 * 90.00169 * 17 15 13 19 19 H 1.48497 * 109.47295 * 209.99840 * 17 15 13 20 20 H 1.48501 * 109.47406 * 330.00226 * 17 15 13 21 21 C 1.50324 * 81.31650 * 68.27288 * 4 2 1 22 22 H 1.09000 * 114.28687 * 288.94654 * 21 4 2 23 23 C 1.51853 * 127.88449 * 133.34828 * 21 4 2 24 24 C 1.55787 * 102.16254 * 241.64570 * 23 21 4 25 25 O 1.45374 * 105.21979 * 6.10279 * 24 23 21 26 26 C 1.40077 * 103.90272 * 30.53131 * 25 24 23 27 27 H 1.08999 * 110.77285 * 66.09346 * 26 25 24 28 28 H 1.09003 * 109.46792 * 272.15121 * 1 2 3 29 29 H 1.08999 * 109.46977 * 32.14410 * 1 2 3 30 30 H 1.08993 * 109.47401 * 152.15090 * 1 2 3 31 31 H 1.08998 * 109.46888 * 194.21294 * 3 2 1 32 32 H 1.08994 * 109.47203 * 314.21870 * 3 2 1 33 33 H 1.08997 * 109.46494 * 74.21975 * 3 2 1 34 34 H 1.00897 * 110.99833 * 220.89098 * 6 4 2 35 35 H 1.09003 * 109.47424 * 299.99543 * 7 6 4 36 36 H 1.08996 * 109.47659 * 60.00054 * 7 6 4 37 37 H 1.08998 * 109.47057 * 304.99739 * 12 8 7 38 38 H 1.08990 * 109.47363 * 65.00155 * 12 8 7 39 39 H 0.96993 * 120.00263 * 179.97438 * 16 15 13 40 40 H 1.08997 * 110.86521 * 359.81323 * 23 21 4 41 41 H 1.09003 * 110.86749 * 123.48029 * 23 21 4 42 42 H 1.08990 * 110.25158 * 125.34939 * 24 23 21 43 43 H 1.09002 * 110.25184 * 247.36638 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1408 1.4028 0.0000 4 6 2.1807 -0.9931 1.0205 5 1 1.7300 -0.9828 2.0129 6 7 3.6494 -0.9701 1.0431 7 6 4.1458 -0.1128 2.1277 8 6 5.6758 -0.1136 2.1188 9 1 6.0336 0.1822 1.1326 10 6 6.1676 -1.4647 2.4343 11 7 6.5462 -2.5081 2.6786 12 6 6.1925 0.8747 3.1663 13 6 7.6940 0.9653 3.0740 14 1 8.2264 0.3765 2.3417 15 6 8.3878 1.7998 3.9244 16 7 9.6982 1.8785 3.8441 17 14 7.4668 2.8186 5.1904 18 1 7.3421 2.0455 6.4522 19 1 8.2128 4.0757 5.4519 20 1 6.1132 3.1446 4.6739 21 6 1.5861 -1.9979 0.0737 22 1 0.4986 -2.0615 0.1123 23 6 2.2498 -3.2296 -0.5165 24 6 2.2111 -2.9234 -2.0435 25 8 1.7035 -1.5652 -2.1476 26 6 2.1503 -0.9479 -0.9723 27 1 3.2376 -0.8707 -0.9654 28 1 -0.3633 0.0386 1.0270 29 1 -0.3633 0.8701 -0.5468 30 1 -0.3634 -0.9086 -0.4800 31 1 3.1992 1.3382 -0.2523 32 1 1.6288 2.0221 -0.7365 33 1 2.0296 1.8474 0.9889 34 1 4.0245 -1.9036 1.1197 35 1 3.7826 0.9046 1.9820 36 1 3.7875 -0.4929 3.0844 37 1 5.7573 1.8573 2.9845 38 1 5.9098 0.5305 4.1611 39 1 10.1863 2.4658 4.4421 40 1 3.2774 -3.3229 -0.1651 41 1 1.6766 -4.1277 -0.2860 42 1 3.2129 -2.9915 -2.4674 43 1 1.5384 -3.6155 -2.5501 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000562188125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:01:35 Heat of formation + Delta-G solvation = 48.697649 kcal Electronic energy + Delta-G solvation = -22305.201497 eV Core-core repulsion = 19160.102027 eV Total energy + Delta-G solvation = -3145.099470 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -43.11399 -38.87385 -37.76006 -35.91412 -34.90848 -33.28205 -32.43853 -29.93017 -28.75262 -27.95708 -25.14974 -24.08104 -24.00997 -23.28192 -20.80412 -19.56448 -18.94912 -18.37511 -17.45955 -17.16427 -16.60982 -16.46616 -15.83713 -15.44878 -15.11748 -15.03484 -14.62234 -14.55210 -14.28261 -14.12707 -13.96089 -13.58682 -13.43475 -13.20663 -12.96504 -12.74461 -12.66897 -12.53454 -12.33710 -12.10394 -11.98416 -11.90803 -11.71062 -11.65992 -11.42948 -11.26945 -11.22389 -10.72859 -10.67720 -9.95499 -9.22360 -8.23814 -6.29594 1.44390 1.45412 1.56574 1.92565 1.93343 2.28844 2.41924 2.87405 3.12205 3.22276 3.31741 3.42658 3.93939 3.95802 4.12272 4.18676 4.21913 4.38081 4.41737 4.45866 4.58759 4.64169 4.67385 4.69363 4.86089 4.87515 4.93155 4.97158 5.00862 5.07452 5.16750 5.22744 5.24823 5.26952 5.38093 5.43258 5.47958 5.60678 5.64608 6.00105 6.14481 6.23420 6.26888 6.73798 6.80656 7.35051 8.93193 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024245 B = 0.004275 C = 0.003905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1154.621398 B = 6547.468905 C = 7168.942324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.039 4.039 3 C -0.137 4.137 4 C 0.092 3.908 5 H 0.078 0.922 6 N -0.670 5.670 7 C 0.075 3.925 8 C 0.024 3.976 9 H 0.119 0.881 10 C 0.247 3.753 11 N -0.506 5.506 12 C -0.002 4.002 13 C -0.531 4.531 14 H 0.028 0.972 15 C 0.003 3.997 16 N -0.955 5.955 17 Si 0.947 3.053 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.220 1.220 21 C -0.198 4.198 22 H 0.131 0.869 23 C -0.136 4.136 24 C 0.049 3.951 25 O -0.387 6.387 26 C 0.024 3.976 27 H 0.104 0.896 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.065 0.935 31 H 0.060 0.940 32 H 0.055 0.945 33 H 0.069 0.931 34 H 0.341 0.659 35 H 0.116 0.884 36 H 0.047 0.953 37 H 0.066 0.934 38 H 0.026 0.974 39 H 0.264 0.736 40 H 0.065 0.935 41 H 0.084 0.916 42 H 0.060 0.940 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.607 -3.312 -7.493 24.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.040 4.040 3 C -0.194 4.194 4 C -0.018 4.018 5 H 0.095 0.905 6 N -0.303 5.303 7 C -0.054 4.054 8 C 0.002 3.998 9 H 0.136 0.864 10 C -0.069 4.069 11 N -0.183 5.183 12 C -0.041 4.041 13 C -0.569 4.569 14 H 0.046 0.954 15 C -0.194 4.194 16 N -0.596 5.596 17 Si 0.770 3.230 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.143 1.143 21 C -0.216 4.216 22 H 0.148 0.852 23 C -0.174 4.174 24 C -0.027 4.027 25 O -0.307 6.307 26 C -0.033 4.033 27 H 0.121 0.879 28 H 0.094 0.906 29 H 0.084 0.916 30 H 0.084 0.916 31 H 0.079 0.921 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.065 0.935 37 H 0.084 0.916 38 H 0.044 0.956 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -22.961 -4.252 -7.732 24.598 hybrid contribution 0.751 -0.101 1.225 1.440 sum -22.210 -4.353 -6.507 23.549 Atomic orbital electron populations 1.21776 0.91173 1.02620 1.03021 1.21994 0.96090 0.93909 0.92046 1.21757 1.01095 0.94271 1.02275 1.22158 0.87281 0.95897 0.96493 0.90472 1.60415 1.06354 1.16229 1.47272 1.22096 0.90264 1.00390 0.92681 1.19112 0.95450 0.82588 1.02608 0.86359 1.29766 0.91445 0.94540 0.91134 1.81083 1.10606 1.15342 1.11266 1.19583 0.94017 0.96073 0.94433 1.21409 0.92467 1.24660 1.18343 0.95406 1.26042 0.95455 0.98183 0.99691 1.70092 1.08854 1.40285 1.40380 0.85711 0.80843 0.77640 0.78799 1.20287 1.21714 1.14263 1.24560 1.01761 0.94507 1.00755 0.85184 1.22260 1.01350 0.98576 0.95210 1.24075 0.99611 0.82718 0.96314 1.88251 1.75973 1.23991 1.42447 1.24604 0.98978 0.98255 0.81511 0.87872 0.90601 0.91624 0.91637 0.92114 0.92566 0.91188 0.83924 0.86641 0.93511 0.91560 0.95583 0.92704 0.91612 0.89687 0.92135 0.88188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.82 8.69 71.98 0.63 -1.19 16 2 C -0.04 -0.68 1.58 -60.05 -0.09 -0.78 16 3 C -0.14 -2.39 8.03 71.98 0.58 -1.81 16 4 C 0.09 1.62 3.96 36.57 0.14 1.77 16 5 H 0.08 1.24 8.05 -2.39 -0.02 1.22 16 6 N -0.67 -14.08 4.27 -536.63 -2.29 -16.37 16 7 C 0.08 1.70 4.92 86.31 0.42 2.12 16 8 C 0.02 0.77 2.42 -12.60 -0.03 0.74 16 9 H 0.12 3.76 8.14 -2.39 -0.02 3.74 16 10 C 0.25 9.39 12.98 89.44 1.16 10.55 16 11 N -0.51 -21.45 18.54 20.01 0.37 -21.08 16 12 C 0.00 -0.08 3.49 29.85 0.10 0.03 16 13 C -0.53 -28.24 9.15 25.60 0.23 -28.00 16 14 H 0.03 1.68 7.84 -2.91 -0.02 1.66 16 15 C 0.00 0.16 5.47 84.65 0.46 0.62 16 16 N -0.96 -58.93 13.96 21.45 0.30 -58.63 16 17 Si 0.95 40.82 27.47 68.60 1.88 42.70 16 18 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 19 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.22 -7.97 6.54 99.48 0.65 -7.32 16 21 C -0.20 -3.48 4.23 -17.96 -0.08 -3.55 16 22 H 0.13 2.07 5.33 -2.39 -0.01 2.06 16 23 C -0.14 -2.37 6.73 31.18 0.21 -2.16 16 24 C 0.05 0.91 7.76 72.95 0.57 1.47 16 25 O -0.39 -9.27 11.41 -141.43 -1.61 -10.88 16 26 C 0.02 0.52 3.96 22.69 0.09 0.61 16 27 H 0.10 2.54 6.28 -2.39 -0.02 2.52 16 28 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.06 0.90 7.90 -2.39 -0.02 0.88 16 30 H 0.06 0.97 6.03 -2.39 -0.01 0.96 16 31 H 0.06 1.22 7.74 -2.39 -0.02 1.20 16 32 H 0.06 0.94 8.00 -2.39 -0.02 0.92 16 33 H 0.07 1.06 7.76 -2.39 -0.02 1.04 16 34 H 0.34 7.85 6.58 -89.70 -0.59 7.26 16 35 H 0.12 2.21 6.67 -2.39 -0.02 2.19 16 36 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.07 2.29 7.20 -2.39 -0.02 2.27 16 38 H 0.03 1.00 7.57 -2.39 -0.02 0.98 16 39 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 40 H 0.07 1.27 6.94 -2.39 -0.02 1.25 16 41 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 43 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 Total: -1.00 -67.44 336.84 3.41 -64.03 By element: Atomic # 1 Polarization: 19.46 SS G_CDS: 0.36 Total: 19.82 kcal Atomic # 6 Polarization: -23.99 SS G_CDS: 4.40 Total: -19.59 kcal Atomic # 7 Polarization: -94.46 SS G_CDS: -1.62 Total: -96.08 kcal Atomic # 8 Polarization: -9.27 SS G_CDS: -1.61 Total: -10.88 kcal Atomic # 14 Polarization: 40.82 SS G_CDS: 1.88 Total: 42.70 kcal Total: -67.44 3.41 -64.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000562188125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.730 kcal (2) G-P(sol) polarization free energy of solvation -67.441 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.033 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds