Wall clock time and date at job start Tue Mar 31 2020 00:54:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47186 * 2 1 4 4 C 1.52997 * 109.47254 * 239.99701 * 2 1 3 5 5 C 1.53006 * 109.46762 * 120.00104 * 2 1 3 6 6 N 1.46895 * 109.47323 * 84.24634 * 5 2 1 7 7 C 1.46898 * 111.00371 * 66.97063 * 6 5 2 8 8 C 1.50704 * 109.46933 * 39.34860 * 7 6 5 9 9 H 1.07996 * 120.00019 * 5.76977 * 8 7 6 10 10 C 1.37882 * 119.99865 * 185.77461 * 8 7 6 11 11 N 1.31511 * 119.99657 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00119 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47155 * 90.00358 * 12 10 8 14 14 H 1.48498 * 109.47267 * 210.00389 * 12 10 8 15 15 H 1.48507 * 109.47250 * 330.00273 * 12 10 8 16 16 C 1.46899 * 110.99782 * 303.01739 * 6 5 2 17 17 C 1.50701 * 109.47336 * 302.13569 * 16 6 5 18 18 N 1.31847 * 119.65632 * 319.97047 * 17 16 6 19 19 C 1.31848 * 121.77824 * 179.74537 * 18 17 16 20 20 C 1.38260 * 120.88674 * 0.54271 * 19 18 17 21 21 C 1.38533 * 119.22036 * 359.47254 * 20 19 18 22 22 C 1.38702 * 119.66128 * 139.99072 * 17 16 6 23 23 O 1.35912 * 120.47070 * 359.95883 * 22 17 16 24 24 H 1.08999 * 109.46727 * 294.39895 * 1 2 3 25 25 H 1.08992 * 109.46752 * 54.39404 * 1 2 3 26 26 H 1.08999 * 109.46901 * 174.40063 * 1 2 3 27 27 H 1.08999 * 109.46857 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.46930 * 299.99747 * 3 2 1 29 29 H 1.08995 * 109.47313 * 60.00193 * 3 2 1 30 30 H 1.09003 * 109.47275 * 307.80226 * 4 2 1 31 31 H 1.09002 * 109.46918 * 67.79522 * 4 2 1 32 32 H 1.08995 * 109.47822 * 187.79678 * 4 2 1 33 33 H 1.08991 * 109.47402 * 324.24159 * 5 2 1 34 34 H 1.09002 * 109.46693 * 204.24332 * 5 2 1 35 35 H 1.08997 * 109.47439 * 159.34973 * 7 6 5 36 36 H 1.09001 * 109.47011 * 279.35094 * 7 6 5 37 37 H 0.96999 * 119.99820 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.47031 * 182.13868 * 16 6 5 39 39 H 1.09004 * 109.47439 * 62.13746 * 16 6 5 40 40 H 1.08001 * 119.55555 * 180.26594 * 19 18 17 41 41 H 1.07997 * 120.39050 * 179.74725 * 20 19 18 42 42 H 1.07991 * 120.81251 * 180.27723 * 21 20 19 43 43 H 0.96704 * 114.00178 * 228.62825 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 2.0723 -2.1686 1.0002 7 6 3.0823 -2.5064 -0.0115 8 6 4.3091 -1.6571 0.2004 9 1 4.3733 -1.0061 1.0596 10 6 5.3495 -1.7112 -0.7029 11 7 6.4202 -0.9705 -0.5176 12 14 5.2387 -2.8377 -2.1888 13 1 4.6212 -2.1030 -3.3220 14 1 6.6013 -3.2857 -2.5731 15 1 4.4054 -4.0201 -1.8526 16 6 0.7468 -2.6648 0.6068 17 6 -0.2523 -2.3396 1.6872 18 7 0.0933 -2.4620 2.9537 19 6 -0.7455 -2.1842 3.9323 20 6 -2.0340 -1.7608 3.6639 21 6 -2.4386 -1.6186 2.3466 22 6 -1.5260 -1.9150 1.3390 23 8 -1.8776 -1.7900 0.0321 24 1 -0.3633 0.4245 0.9359 25 1 -0.3632 0.5983 -0.8355 26 1 -0.3633 -1.0228 -0.1003 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.5673 -1.7008 -1.3217 31 1 1.7950 -0.1333 -2.1337 32 1 3.1211 -0.8437 -1.1823 33 1 1.3749 -0.5115 2.0869 34 1 3.0446 -0.3710 1.4864 35 1 3.3493 -3.5593 0.0788 36 1 2.6775 -2.3182 -1.0060 37 1 7.1523 -1.0088 -1.1528 38 1 0.7903 -3.7447 0.4654 39 1 0.4422 -2.1883 -0.3250 40 1 -0.4231 -2.2930 4.9573 41 1 -2.7157 -1.5393 4.4717 42 1 -3.4376 -1.2854 2.1077 43 1 -2.3040 -0.9488 -0.1818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000571602783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:55 Heat of formation + Delta-G solvation = 80.764188 kcal Electronic energy + Delta-G solvation = -23794.684388 eV Core-core repulsion = 20650.975428 eV Total energy + Delta-G solvation = -3143.708960 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.08091 -38.89327 -37.51781 -33.73841 -33.04494 -31.84321 -30.67909 -28.48874 -27.53551 -26.23230 -25.69932 -24.17730 -23.33296 -21.64265 -19.96372 -18.59270 -18.27757 -17.06912 -17.03124 -16.07221 -15.60354 -14.89408 -14.70375 -14.38045 -14.03661 -13.84146 -13.47610 -13.10127 -12.96657 -12.81963 -12.40042 -12.36675 -11.91198 -11.72948 -11.58475 -11.26220 -10.99745 -10.80930 -10.65777 -10.39005 -10.32884 -10.10476 -9.80003 -9.62246 -9.52269 -9.33900 -9.19847 -8.83379 -8.52310 -8.41858 -6.84392 -6.04742 -3.99373 1.13953 1.27528 3.28971 3.38099 3.42171 3.70769 3.99159 4.42501 4.55027 4.60262 4.78878 5.05847 5.19559 5.27734 5.41017 5.46868 5.56062 5.57821 5.68427 5.97746 6.00976 6.05098 6.09566 6.12526 6.22602 6.27507 6.30515 6.47116 6.50102 6.57513 6.70405 6.72509 6.84849 6.98528 7.01107 7.22276 7.24556 7.36683 7.55736 7.66471 8.00288 8.21104 8.28416 8.72112 9.03572 9.55454 11.06670 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024462 B = 0.006079 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.351849 B = 4604.881539 C = 4774.022319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.084 4.084 3 C -0.133 4.133 4 C -0.185 4.185 5 C 0.072 3.928 6 N -0.505 5.505 7 C 0.113 3.887 8 C -0.505 4.505 9 H 0.087 0.913 10 C 0.071 3.929 11 N -0.897 5.897 12 Si 0.865 3.135 13 H -0.275 1.275 14 H -0.287 1.287 15 H -0.264 1.264 16 C 0.082 3.918 17 C 0.137 3.863 18 N -0.423 5.423 19 C 0.075 3.925 20 C -0.161 4.161 21 C -0.140 4.140 22 C 0.066 3.934 23 O -0.474 6.474 24 H 0.035 0.965 25 H 0.039 0.961 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.040 0.960 29 H 0.040 0.960 30 H 0.058 0.942 31 H 0.024 0.976 32 H 0.125 0.875 33 H 0.046 0.954 34 H 0.098 0.902 35 H 0.020 0.980 36 H 0.038 0.962 37 H 0.263 0.737 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.155 0.845 41 H 0.132 0.868 42 H 0.134 0.866 43 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.211 1.243 3.232 18.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.086 4.086 3 C -0.191 4.191 4 C -0.241 4.241 5 C -0.056 4.056 6 N -0.228 5.228 7 C -0.013 4.013 8 C -0.542 4.542 9 H 0.105 0.895 10 C -0.131 4.131 11 N -0.536 5.536 12 Si 0.692 3.308 13 H -0.201 1.201 14 H -0.213 1.213 15 H -0.188 1.188 16 C -0.047 4.047 17 C -0.003 4.003 18 N -0.132 5.132 19 C -0.082 4.082 20 C -0.181 4.181 21 C -0.167 4.167 22 C 0.018 3.982 23 O -0.281 6.281 24 H 0.055 0.945 25 H 0.058 0.942 26 H 0.128 0.872 27 H 0.084 0.916 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.077 0.923 31 H 0.043 0.957 32 H 0.142 0.858 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.037 0.963 36 H 0.055 0.945 37 H 0.073 0.927 38 H 0.097 0.903 39 H 0.093 0.907 40 H 0.172 0.828 41 H 0.150 0.850 42 H 0.152 0.848 43 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -16.806 0.184 3.728 17.216 hybrid contribution -1.491 0.809 -1.656 2.370 sum -18.297 0.993 2.073 18.440 Atomic orbital electron populations 1.23407 0.97531 1.05478 0.99519 1.21045 0.93727 0.96025 0.97814 1.21795 1.02170 0.95550 0.99592 1.23327 1.07807 0.97895 0.95032 1.22293 1.02349 0.87126 0.93855 1.62135 1.02271 1.13270 1.45088 1.21419 0.91141 0.96917 0.91794 1.21171 0.98983 1.23794 1.10292 0.89510 1.24891 0.95148 0.95207 0.97852 1.69884 1.06822 1.39986 1.36918 0.87025 0.77670 0.82350 0.83790 1.20088 1.21272 1.18821 1.21408 0.89377 1.00665 0.93203 1.21356 0.90110 0.96140 0.92697 1.67748 1.34612 1.11891 0.98986 1.22851 0.90039 0.96275 0.99039 1.21984 0.98054 1.01571 0.96484 1.21801 0.99309 1.02289 0.93251 1.19342 0.93440 1.01618 0.83763 1.84925 1.78336 1.42298 1.22532 0.94545 0.94153 0.87173 0.91590 0.94109 0.94086 0.92336 0.95721 0.85769 0.93585 0.88392 0.96254 0.94548 0.92668 0.90331 0.90679 0.82753 0.85028 0.84817 0.75224 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.08 5.46 37.16 0.20 -2.87 16 2 C -0.08 -1.55 0.77 -154.51 -0.12 -1.67 16 3 C -0.13 -2.38 8.34 37.16 0.31 -2.07 16 4 C -0.19 -3.74 6.26 37.16 0.23 -3.51 16 5 C 0.07 1.48 4.41 -3.82 -0.02 1.46 16 6 N -0.51 -10.80 4.72 -237.52 -1.12 -11.92 16 7 C 0.11 2.68 3.42 -4.97 -0.02 2.66 16 8 C -0.50 -13.61 7.06 -34.44 -0.24 -13.85 16 9 H 0.09 2.55 5.74 -52.49 -0.30 2.25 16 10 C 0.07 1.97 5.09 -17.82 -0.09 1.88 16 11 N -0.90 -26.61 13.96 55.43 0.77 -25.84 16 12 Si 0.86 21.01 26.90 -169.99 -4.57 16.43 16 13 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 14 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 15 H -0.26 -6.23 6.71 56.52 0.38 -5.86 16 16 C 0.08 1.50 4.47 -4.98 -0.02 1.48 16 17 C 0.14 2.23 4.43 -82.41 -0.37 1.87 16 18 N -0.42 -7.10 9.33 -9.35 -0.09 -7.18 16 19 C 0.08 0.98 11.18 -17.54 -0.20 0.78 16 20 C -0.16 -1.69 10.11 -39.46 -0.40 -2.09 16 21 C -0.14 -1.50 10.11 -39.14 -0.40 -1.89 16 22 C 0.07 0.87 5.03 -39.08 -0.20 0.67 16 23 O -0.47 -5.46 10.47 -19.46 -0.20 -5.66 16 24 H 0.04 0.53 7.66 -51.93 -0.40 0.14 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.11 1.62 0.85 -23.74 -0.02 1.60 16 27 H 0.07 1.32 8.12 -51.93 -0.42 0.90 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 30 H 0.06 1.16 3.60 -51.93 -0.19 0.97 16 31 H 0.02 0.46 8.13 -51.93 -0.42 0.03 16 32 H 0.12 2.94 3.33 -51.93 -0.17 2.76 16 33 H 0.05 0.92 6.37 -51.93 -0.33 0.59 16 34 H 0.10 2.31 5.05 -51.93 -0.26 2.04 16 35 H 0.02 0.49 7.60 -51.93 -0.39 0.09 16 36 H 0.04 0.85 2.66 -63.36 -0.17 0.68 16 37 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 38 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 39 H 0.08 1.34 2.87 -51.93 -0.15 1.19 16 40 H 0.16 1.60 8.06 -52.49 -0.42 1.18 16 41 H 0.13 0.97 8.06 -52.49 -0.42 0.54 16 42 H 0.13 1.02 8.06 -52.49 -0.42 0.59 16 43 H 0.39 2.88 8.24 75.76 0.62 3.51 16 LS Contribution 307.71 15.07 4.64 4.64 Total: -1.00 -30.88 307.71 -6.61 -37.49 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: -4.72 Total: 9.19 kcal Atomic # 6 Polarization: -15.84 SS G_CDS: -1.31 Total: -17.15 kcal Atomic # 7 Polarization: -44.51 SS G_CDS: -0.44 Total: -44.94 kcal Atomic # 8 Polarization: -5.46 SS G_CDS: -0.20 Total: -5.66 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -4.57 Total: 16.43 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.88 -6.61 -37.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571602783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.257 kcal (2) G-P(sol) polarization free energy of solvation -30.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.493 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.764 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds