Wall clock time and date at job start Tue Mar 31 2020 00:54:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47186 * 2 1 4 4 C 1.52997 * 109.47254 * 239.99701 * 2 1 3 5 5 C 1.53006 * 109.46762 * 120.00104 * 2 1 3 6 6 N 1.46895 * 109.47323 * 84.24634 * 5 2 1 7 7 C 1.46898 * 111.00371 * 66.97063 * 6 5 2 8 8 C 1.50704 * 109.46933 * 39.34860 * 7 6 5 9 9 H 1.07996 * 120.00019 * 5.76977 * 8 7 6 10 10 C 1.37882 * 119.99865 * 185.77461 * 8 7 6 11 11 N 1.31511 * 119.99657 * 180.02562 * 10 8 7 12 12 Si 1.86796 * 120.00119 * 359.97438 * 10 8 7 13 13 H 1.48500 * 109.47155 * 90.00358 * 12 10 8 14 14 H 1.48498 * 109.47267 * 210.00389 * 12 10 8 15 15 H 1.48507 * 109.47250 * 330.00273 * 12 10 8 16 16 C 1.46899 * 110.99782 * 303.01739 * 6 5 2 17 17 C 1.50701 * 109.47336 * 302.13569 * 16 6 5 18 18 N 1.31847 * 119.65632 * 319.97047 * 17 16 6 19 19 C 1.31848 * 121.77824 * 179.74537 * 18 17 16 20 20 C 1.38260 * 120.88674 * 0.54271 * 19 18 17 21 21 C 1.38533 * 119.22036 * 359.47254 * 20 19 18 22 22 C 1.38702 * 119.66128 * 139.99072 * 17 16 6 23 23 O 1.35912 * 120.47070 * 359.95883 * 22 17 16 24 24 H 1.08999 * 109.46727 * 294.39895 * 1 2 3 25 25 H 1.08992 * 109.46752 * 54.39404 * 1 2 3 26 26 H 1.08999 * 109.46901 * 174.40063 * 1 2 3 27 27 H 1.08999 * 109.46857 * 180.02562 * 3 2 1 28 28 H 1.08994 * 109.46930 * 299.99747 * 3 2 1 29 29 H 1.08995 * 109.47313 * 60.00193 * 3 2 1 30 30 H 1.09003 * 109.47275 * 307.80226 * 4 2 1 31 31 H 1.09002 * 109.46918 * 67.79522 * 4 2 1 32 32 H 1.08995 * 109.47822 * 187.79678 * 4 2 1 33 33 H 1.08991 * 109.47402 * 324.24159 * 5 2 1 34 34 H 1.09002 * 109.46693 * 204.24332 * 5 2 1 35 35 H 1.08997 * 109.47439 * 159.34973 * 7 6 5 36 36 H 1.09001 * 109.47011 * 279.35094 * 7 6 5 37 37 H 0.96999 * 119.99820 * 179.97438 * 11 10 8 38 38 H 1.09003 * 109.47031 * 182.13868 * 16 6 5 39 39 H 1.09004 * 109.47439 * 62.13746 * 16 6 5 40 40 H 1.08001 * 119.55555 * 180.26594 * 19 18 17 41 41 H 1.07997 * 120.39050 * 179.74725 * 20 19 18 42 42 H 1.07991 * 120.81251 * 180.27723 * 21 20 19 43 43 H 0.96704 * 114.00178 * 228.62825 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2492 5 6 2.0400 -0.7213 1.2493 6 7 2.0723 -2.1686 1.0002 7 6 3.0823 -2.5064 -0.0115 8 6 4.3091 -1.6571 0.2004 9 1 4.3733 -1.0061 1.0596 10 6 5.3495 -1.7112 -0.7029 11 7 6.4202 -0.9705 -0.5176 12 14 5.2387 -2.8377 -2.1888 13 1 4.6212 -2.1030 -3.3220 14 1 6.6013 -3.2857 -2.5731 15 1 4.4054 -4.0201 -1.8526 16 6 0.7468 -2.6648 0.6068 17 6 -0.2523 -2.3396 1.6872 18 7 0.0933 -2.4620 2.9537 19 6 -0.7455 -2.1842 3.9323 20 6 -2.0340 -1.7608 3.6639 21 6 -2.4386 -1.6186 2.3466 22 6 -1.5260 -1.9150 1.3390 23 8 -1.8776 -1.7900 0.0321 24 1 -0.3633 0.4245 0.9359 25 1 -0.3632 0.5983 -0.8355 26 1 -0.3633 -1.0228 -0.1003 27 1 3.1301 1.4424 -0.0005 28 1 1.6768 1.9562 -0.8900 29 1 1.6768 1.9563 0.8899 30 1 1.5673 -1.7008 -1.3217 31 1 1.7950 -0.1333 -2.1337 32 1 3.1211 -0.8437 -1.1823 33 1 1.3749 -0.5115 2.0869 34 1 3.0446 -0.3710 1.4864 35 1 3.3493 -3.5593 0.0788 36 1 2.6775 -2.3182 -1.0060 37 1 7.1523 -1.0088 -1.1528 38 1 0.7903 -3.7447 0.4654 39 1 0.4422 -2.1883 -0.3250 40 1 -0.4231 -2.2930 4.9573 41 1 -2.7157 -1.5393 4.4717 42 1 -3.4376 -1.2854 2.1077 43 1 -2.3040 -0.9488 -0.1818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000571602783.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:54 Heat of formation + Delta-G solvation = 57.201896 kcal Electronic energy + Delta-G solvation = -23795.706126 eV Core-core repulsion = 20650.975428 eV Total energy + Delta-G solvation = -3144.730698 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.23478 -40.29903 -38.44072 -35.32561 -34.76682 -33.18955 -31.86375 -30.14127 -28.93432 -27.67611 -27.30131 -25.68265 -24.34426 -22.98158 -21.62746 -19.95687 -19.30821 -19.00716 -18.12417 -17.16269 -16.84657 -16.51772 -16.14632 -16.04682 -15.45218 -15.00368 -14.95927 -14.50042 -14.24653 -14.11315 -13.84584 -13.63675 -13.32458 -13.09794 -12.97825 -12.87418 -12.67814 -12.34646 -12.30869 -12.13105 -11.86542 -11.73995 -11.49914 -11.11508 -11.08938 -10.78450 -10.64353 -10.51136 -10.19211 -9.40698 -8.50765 -8.21536 -6.19898 0.19068 0.39218 1.34108 1.37687 1.48046 2.37244 2.79310 3.07054 3.11564 3.34069 3.50591 3.94017 4.00956 4.03653 4.08103 4.17843 4.24194 4.53537 4.57343 4.62319 4.68127 4.76549 4.80909 4.85159 4.91519 4.95086 4.99335 5.02540 5.13420 5.16596 5.21672 5.26554 5.32433 5.41517 5.46625 5.59686 5.67257 5.73250 5.88339 6.08652 6.49063 6.65396 6.79365 6.84265 7.26623 7.38631 8.92947 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024462 B = 0.006079 C = 0.005864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1144.351849 B = 4604.881539 C = 4774.022319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.084 4.084 3 C -0.128 4.128 4 C -0.183 4.183 5 C 0.086 3.914 6 N -0.522 5.522 7 C 0.123 3.877 8 C -0.496 4.496 9 H 0.048 0.952 10 C 0.018 3.982 11 N -0.945 5.945 12 Si 0.925 3.075 13 H -0.260 1.260 14 H -0.287 1.287 15 H -0.253 1.253 16 C 0.085 3.915 17 C 0.101 3.899 18 N -0.469 5.469 19 C 0.057 3.943 20 C -0.143 4.143 21 C -0.132 4.132 22 C 0.072 3.928 23 O -0.479 6.479 24 H 0.043 0.957 25 H 0.061 0.939 26 H 0.118 0.882 27 H 0.028 0.972 28 H 0.060 0.940 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.040 0.960 32 H 0.087 0.913 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.003 0.997 36 H 0.052 0.948 37 H 0.264 0.736 38 H 0.067 0.933 39 H 0.084 0.916 40 H 0.170 0.830 41 H 0.172 0.828 42 H 0.175 0.825 43 H 0.413 0.587 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.445 1.465 2.690 22.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.086 4.086 3 C -0.186 4.186 4 C -0.239 4.239 5 C -0.043 4.043 6 N -0.244 5.244 7 C -0.003 4.003 8 C -0.534 4.534 9 H 0.066 0.934 10 C -0.179 4.179 11 N -0.586 5.586 12 Si 0.749 3.251 13 H -0.185 1.185 14 H -0.213 1.213 15 H -0.177 1.177 16 C -0.043 4.043 17 C -0.038 4.038 18 N -0.179 5.179 19 C -0.101 4.101 20 C -0.162 4.162 21 C -0.158 4.158 22 C 0.024 3.976 23 O -0.289 6.289 24 H 0.062 0.938 25 H 0.080 0.920 26 H 0.135 0.865 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.059 0.941 32 H 0.105 0.895 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.021 0.979 36 H 0.069 0.931 37 H 0.073 0.927 38 H 0.085 0.915 39 H 0.101 0.899 40 H 0.188 0.812 41 H 0.189 0.811 42 H 0.192 0.808 43 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -21.070 0.416 3.183 21.314 hybrid contribution -0.262 0.789 -1.335 1.573 sum -21.332 1.205 1.848 21.446 Atomic orbital electron populations 1.23295 0.94089 1.06574 1.00821 1.21014 0.96473 0.95504 0.95623 1.21740 0.99808 0.95819 1.01268 1.23159 1.05316 0.98802 0.96642 1.22033 0.99911 0.86959 0.95348 1.61979 1.03860 1.13950 1.44630 1.21250 0.90793 0.94988 0.93292 1.21268 1.00368 1.23042 1.08713 0.93368 1.25633 0.94688 0.96703 1.00878 1.70030 1.07913 1.42222 1.38443 0.86058 0.77795 0.80763 0.80528 1.18489 1.21277 1.17657 1.21353 0.88161 0.99877 0.94877 1.20993 0.91143 0.99570 0.92107 1.67570 1.36864 1.13531 0.99946 1.23243 0.91110 0.96736 0.99005 1.22399 0.97263 0.98763 0.97786 1.22235 1.00394 1.00723 0.92436 1.19240 0.92584 1.00863 0.84943 1.84876 1.78412 1.43796 1.21792 0.93777 0.92011 0.86508 0.95263 0.92116 0.92619 0.91871 0.94089 0.89468 0.93016 0.92832 0.97910 0.93059 0.92679 0.91520 0.89910 0.81248 0.81099 0.80778 0.72862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -5.21 5.46 71.98 0.39 -4.82 16 2 C -0.08 -3.06 0.77 -52.18 -0.04 -3.10 16 3 C -0.13 -4.55 8.34 71.98 0.60 -3.95 16 4 C -0.18 -7.29 6.26 71.98 0.45 -6.84 16 5 C 0.09 3.63 4.41 86.31 0.38 4.01 16 6 N -0.52 -22.99 4.72 -905.37 -4.28 -27.26 16 7 C 0.12 6.02 3.42 85.56 0.29 6.31 16 8 C -0.50 -28.25 7.06 25.60 0.18 -28.07 16 9 H 0.05 3.08 5.74 -2.91 -0.02 3.06 16 10 C 0.02 1.06 5.09 84.66 0.43 1.49 16 11 N -0.94 -58.76 13.96 21.45 0.30 -58.46 16 12 Si 0.92 44.13 26.90 68.60 1.85 45.97 16 13 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 14 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 15 H -0.25 -11.52 6.71 99.48 0.67 -10.85 16 16 C 0.09 3.10 4.47 85.56 0.38 3.48 16 17 C 0.10 3.16 4.43 42.67 0.19 3.35 16 18 N -0.47 -15.48 9.33 -183.50 -1.71 -17.19 16 19 C 0.06 1.35 11.18 84.70 0.95 2.30 16 20 C -0.14 -2.37 10.11 22.35 0.23 -2.14 16 21 C -0.13 -2.16 10.11 22.56 0.23 -1.93 16 22 C 0.07 1.65 5.03 22.60 0.11 1.76 16 23 O -0.48 -9.11 10.47 -92.56 -0.97 -10.08 16 24 H 0.04 1.14 7.66 -2.39 -0.02 1.12 16 25 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.12 3.08 0.85 15.46 0.01 3.09 16 27 H 0.03 1.21 8.12 -2.39 -0.02 1.19 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.06 2.43 3.60 -2.39 -0.01 2.42 16 31 H 0.04 1.46 8.13 -2.39 -0.02 1.44 16 32 H 0.09 4.20 3.33 -2.39 -0.01 4.19 16 33 H 0.05 2.11 6.37 -2.39 -0.02 2.09 16 34 H 0.05 2.73 5.05 -2.39 -0.01 2.71 16 35 H 0.00 0.15 7.60 -2.39 -0.02 0.13 16 36 H 0.05 2.40 2.66 -13.12 -0.03 2.37 16 37 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 38 H 0.07 2.50 8.14 -2.39 -0.02 2.48 16 39 H 0.08 2.83 2.87 -2.39 -0.01 2.83 16 40 H 0.17 3.24 8.06 -2.91 -0.02 3.22 16 41 H 0.17 1.49 8.06 -2.91 -0.02 1.46 16 42 H 0.17 1.45 8.06 -2.92 -0.02 1.43 16 43 H 0.41 3.97 8.24 -24.41 -0.20 3.77 16 Total: -1.00 -71.98 307.71 0.76 -71.22 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.80 Total: 23.95 kcal Atomic # 6 Polarization: -32.91 SS G_CDS: 4.78 Total: -28.14 kcal Atomic # 7 Polarization: -97.23 SS G_CDS: -5.69 Total: -102.92 kcal Atomic # 8 Polarization: -9.11 SS G_CDS: -0.97 Total: -10.08 kcal Atomic # 14 Polarization: 44.13 SS G_CDS: 1.85 Total: 45.97 kcal Total: -71.98 0.76 -71.22 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000571602783.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.419 kcal (2) G-P(sol) polarization free energy of solvation -71.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.217 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds