Wall clock time and date at job start Tue Mar 31 2020 00:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50697 * 109.46629 * 2 1 4 4 N 1.30260 * 125.61928 * 89.97562 * 3 2 1 5 5 C 1.34472 * 108.70166 * 179.77158 * 4 3 2 6 6 C 1.50702 * 126.16688 * 180.26990 * 5 4 3 7 7 C 1.34328 * 107.66969 * 0.39653 * 5 4 3 8 8 C 1.50703 * 126.44544 * 179.87416 * 7 5 4 9 9 N 1.46899 * 109.47107 * 89.71067 * 8 7 5 10 10 C 1.46851 * 110.99898 * 45.79103 * 9 8 7 11 11 C 1.53039 * 109.52490 * 185.83779 * 10 9 8 12 12 C 1.53116 * 109.27694 * 300.82213 * 11 10 9 13 13 C 1.50701 * 109.57285 * 177.58822 * 12 11 10 14 14 H 1.08007 * 119.99710 * 240.27981 * 13 12 11 15 15 C 1.37876 * 120.00105 * 60.29025 * 13 12 11 16 16 N 1.31509 * 119.99922 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00069 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47258 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47314 * 119.99402 * 17 15 13 20 20 H 1.48506 * 109.46797 * 239.99651 * 17 15 13 21 21 C 1.53121 * 109.16460 * 57.65281 * 12 11 10 22 22 C 1.46842 * 111.00041 * 169.99728 * 9 8 7 23 23 O 1.33969 * 125.62211 * 269.99437 * 3 2 1 24 24 H 1.09001 * 109.47204 * 60.00158 * 1 2 3 25 25 H 1.09002 * 109.46321 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47233 * 299.99817 * 1 2 3 27 27 H 1.08997 * 109.46891 * 239.99836 * 2 1 3 28 28 H 1.08995 * 109.46543 * 119.99992 * 2 1 3 29 29 H 1.09001 * 109.47088 * 270.14614 * 6 5 4 30 30 H 1.09003 * 109.47057 * 30.14895 * 6 5 4 31 31 H 1.08998 * 109.47185 * 150.14720 * 6 5 4 32 32 H 1.09002 * 109.47152 * 329.71154 * 8 7 5 33 33 H 1.09001 * 109.46980 * 209.71254 * 8 7 5 34 34 H 1.08996 * 109.46471 * 305.85679 * 10 9 8 35 35 H 1.09004 * 109.45929 * 65.82278 * 10 9 8 36 36 H 1.08992 * 109.50519 * 180.88071 * 11 10 9 37 37 H 1.09003 * 109.50071 * 60.76201 * 11 10 9 38 38 H 1.08999 * 109.52546 * 297.75036 * 12 11 10 39 39 H 0.96996 * 120.00279 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.50961 * 182.40006 * 21 12 11 41 41 H 1.09008 * 109.53352 * 62.30425 * 21 12 11 42 42 H 1.08996 * 109.46789 * 294.18136 * 22 9 8 43 43 H 1.09007 * 109.45854 * 54.15867 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2847 2.1362 1.0589 5 6 2.7184 3.3475 0.6676 6 6 3.1266 4.4811 1.5728 7 6 2.7195 3.3658 -0.6756 8 6 3.1277 4.5197 -1.5548 9 7 4.5661 4.4329 -1.8401 10 6 4.9467 3.0649 -2.2146 11 6 6.4676 2.9794 -2.3621 12 6 6.9277 3.9692 -3.4360 13 6 8.4303 3.9331 -3.5452 14 1 9.0071 4.8264 -3.3557 15 6 9.0686 2.7599 -3.8874 16 7 8.3663 1.6722 -4.1179 17 14 10.9312 2.7150 -4.0222 18 1 11.4823 4.0594 -3.7156 19 1 11.4737 1.7255 -3.0570 20 1 11.3184 2.3246 -5.4017 21 6 6.4767 5.3796 -3.0459 22 6 4.9556 5.3954 -2.8785 23 8 2.2924 2.1565 -1.0890 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2572 5.0999 1.7949 30 1 3.5319 4.0773 2.5006 31 1 3.8861 5.0860 1.0775 32 1 2.9146 5.4588 -1.0441 33 1 2.5687 4.4796 -2.4897 34 1 4.6174 2.3716 -1.4407 35 1 4.4746 2.8029 -3.1615 36 1 6.7484 1.9679 -2.6553 37 1 6.9399 3.2279 -1.4117 38 1 6.4860 3.6978 -4.3948 39 1 8.8154 0.8467 -4.3582 40 1 6.7642 6.0828 -3.8274 41 1 6.9493 5.6665 -2.1064 42 1 4.4835 5.1225 -3.8222 43 1 4.6329 6.3949 -2.5866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573754361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:05 Heat of formation + Delta-G solvation = 4.985528 kcal Electronic energy + Delta-G solvation = -22291.043177 eV Core-core repulsion = 19144.048207 eV Total energy + Delta-G solvation = -3146.994969 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.25267 -38.29857 -35.03462 -34.73576 -33.78979 -31.83836 -30.38658 -29.83831 -28.05419 -26.18341 -24.81493 -23.20340 -22.15002 -21.60282 -21.19305 -20.18791 -18.59884 -16.93105 -16.40364 -16.30523 -15.13122 -15.03174 -14.82002 -14.40635 -14.33789 -13.75934 -13.20978 -13.13889 -13.03970 -12.89672 -12.67605 -12.38257 -12.21813 -11.94022 -11.89361 -11.82150 -11.45235 -11.33321 -10.96849 -10.78704 -10.72496 -10.49576 -10.32799 -10.23043 -9.99544 -9.45799 -8.99166 -8.71735 -8.45654 -8.29593 -7.82777 -5.96774 -4.02204 1.54830 2.71783 2.78859 3.30916 3.39038 3.43010 4.00062 4.42485 4.46638 4.73541 4.88448 4.96067 4.99380 5.14098 5.30750 5.33914 5.47275 5.56524 5.60836 5.65180 5.67698 5.80988 5.83611 5.89256 5.92829 6.03654 6.13226 6.16118 6.24971 6.27987 6.51191 6.58731 6.60051 6.82722 7.04199 7.10910 7.39103 7.54690 7.59846 7.80819 7.88466 8.03829 8.15127 8.48230 9.01768 9.62402 11.09563 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.004370 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.100001 B = 6405.845860 C = 7082.793991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.026 4.026 3 C 0.186 3.814 4 N -0.482 5.482 5 C 0.000 4.000 6 C -0.070 4.070 7 C -0.036 4.036 8 C 0.138 3.862 9 N -0.529 5.529 10 C 0.059 3.941 11 C -0.102 4.102 12 C 0.047 3.953 13 C -0.510 4.510 14 H 0.055 0.945 15 C 0.060 3.940 16 N -0.892 5.892 17 Si 0.889 3.111 18 H -0.273 1.273 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.105 4.105 22 C 0.060 3.940 23 O -0.199 6.199 24 H 0.058 0.942 25 H 0.071 0.929 26 H 0.062 0.938 27 H 0.093 0.907 28 H 0.104 0.896 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.102 0.898 33 H 0.046 0.954 34 H 0.052 0.948 35 H 0.023 0.977 36 H 0.092 0.908 37 H 0.043 0.957 38 H 0.020 0.980 39 H 0.258 0.742 40 H 0.052 0.948 41 H 0.058 0.942 42 H 0.027 0.973 43 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.111 1.242 7.323 16.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.064 4.064 3 C -0.021 4.021 4 N -0.212 5.212 5 C -0.121 4.121 6 C -0.127 4.127 7 C -0.088 4.088 8 C 0.010 3.990 9 N -0.255 5.255 10 C -0.068 4.068 11 C -0.140 4.140 12 C 0.029 3.971 13 C -0.548 4.548 14 H 0.074 0.926 15 C -0.140 4.140 16 N -0.531 5.531 17 Si 0.718 3.282 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.143 4.143 22 C -0.067 4.067 23 O -0.086 6.086 24 H 0.077 0.923 25 H 0.090 0.910 26 H 0.081 0.919 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.120 0.880 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.041 0.959 36 H 0.110 0.890 37 H 0.062 0.938 38 H 0.039 0.961 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.045 0.955 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -14.904 0.961 8.251 17.062 hybrid contribution 0.656 -0.200 -1.533 1.679 sum -14.247 0.761 6.718 15.770 Atomic orbital electron populations 1.21771 0.93348 1.02725 1.02769 1.20023 0.96581 0.84577 1.05194 1.26111 1.00415 0.96672 0.78863 1.70304 1.16889 1.03667 1.30335 1.21425 1.03894 0.94688 0.92064 1.20112 1.01313 0.93301 0.97960 1.22990 1.04697 0.86183 0.94979 1.20569 0.90432 0.91735 0.96244 1.62288 1.11322 1.07620 1.44292 1.22303 1.00063 0.87143 0.97250 1.21657 0.89012 1.04057 0.99307 1.18696 0.95475 0.88976 0.93991 1.21238 0.91636 0.95776 1.46132 0.92640 1.24974 0.98031 0.95769 0.95262 1.69886 1.34891 1.00534 1.47836 0.86576 0.86091 0.78031 0.77545 1.19794 1.21080 1.21137 1.21677 0.91449 1.00598 1.00601 1.22165 0.98776 0.94299 0.91485 1.84416 1.64077 1.22507 1.37598 0.92269 0.91043 0.91904 0.88878 0.87775 0.91350 0.90899 0.89786 0.87998 0.93618 0.92978 0.95859 0.88970 0.93833 0.96142 0.93157 0.92921 0.92317 0.95483 0.92029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.90 37.16 0.37 -0.86 16 2 C -0.03 -0.26 6.56 -27.88 -0.18 -0.45 16 3 C 0.19 2.76 7.60 -12.95 -0.10 2.66 16 4 N -0.48 -7.78 11.29 -7.36 -0.08 -7.86 16 5 C 0.00 0.00 7.11 -82.81 -0.59 -0.59 16 6 C -0.07 -0.87 10.05 36.01 0.36 -0.51 16 7 C -0.04 -0.57 5.05 -35.69 -0.18 -0.75 16 8 C 0.14 2.04 5.43 -4.98 -0.03 2.02 16 9 N -0.53 -9.47 4.80 -236.11 -1.13 -10.60 16 10 C 0.06 1.24 4.99 -3.83 -0.02 1.22 16 11 C -0.10 -2.48 5.12 -26.65 -0.14 -2.62 16 12 C 0.05 1.18 2.16 -91.65 -0.20 0.98 16 13 C -0.51 -14.06 8.56 -34.44 -0.29 -14.35 16 14 H 0.06 1.51 7.75 -52.48 -0.41 1.11 16 15 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 16 N -0.89 -25.69 11.37 55.43 0.63 -25.06 16 17 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 18 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 C -0.11 -2.18 5.32 -26.65 -0.14 -2.32 16 22 C 0.06 1.05 5.42 -3.83 -0.02 1.03 16 23 O -0.20 -3.28 10.02 5.36 0.05 -3.23 16 24 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 25 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 29 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 31 H 0.08 1.04 7.80 -51.93 -0.40 0.63 16 32 H 0.10 1.24 7.81 -51.93 -0.41 0.84 16 33 H 0.05 0.66 8.08 -51.93 -0.42 0.24 16 34 H 0.05 1.10 6.03 -51.93 -0.31 0.78 16 35 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.09 2.50 6.17 -51.93 -0.32 2.18 16 37 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.02 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 40 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.06 1.23 8.14 -51.92 -0.42 0.81 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 43 H 0.06 0.90 8.12 -51.93 -0.42 0.48 16 LS Contribution 342.85 15.07 5.17 5.17 Total: -1.00 -30.80 342.85 -8.96 -39.76 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.32 Total: -1.63 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -1.25 Total: -12.96 kcal Atomic # 7 Polarization: -42.94 SS G_CDS: -0.59 Total: -43.53 kcal Atomic # 8 Polarization: -3.28 SS G_CDS: 0.05 Total: -3.23 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -30.80 -8.96 -39.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573754361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.744 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.758 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.986 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds