Wall clock time and date at job start Tue Mar 31 2020 00:16:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53011 * 1 3 3 C 1.50697 * 109.46629 * 2 1 4 4 N 1.30260 * 125.61928 * 89.97562 * 3 2 1 5 5 C 1.34472 * 108.70166 * 179.77158 * 4 3 2 6 6 C 1.50702 * 126.16688 * 180.26990 * 5 4 3 7 7 C 1.34328 * 107.66969 * 0.39653 * 5 4 3 8 8 C 1.50703 * 126.44544 * 179.87416 * 7 5 4 9 9 N 1.46899 * 109.47107 * 89.71067 * 8 7 5 10 10 C 1.46851 * 110.99898 * 45.79103 * 9 8 7 11 11 C 1.53039 * 109.52490 * 185.83779 * 10 9 8 12 12 C 1.53116 * 109.27694 * 300.82213 * 11 10 9 13 13 C 1.50701 * 109.57285 * 177.58822 * 12 11 10 14 14 H 1.08007 * 119.99710 * 240.27981 * 13 12 11 15 15 C 1.37876 * 120.00105 * 60.29025 * 13 12 11 16 16 N 1.31509 * 119.99922 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00069 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47258 * 359.97438 * 17 15 13 19 19 H 1.48491 * 109.47314 * 119.99402 * 17 15 13 20 20 H 1.48506 * 109.46797 * 239.99651 * 17 15 13 21 21 C 1.53121 * 109.16460 * 57.65281 * 12 11 10 22 22 C 1.46842 * 111.00041 * 169.99728 * 9 8 7 23 23 O 1.33969 * 125.62211 * 269.99437 * 3 2 1 24 24 H 1.09001 * 109.47204 * 60.00158 * 1 2 3 25 25 H 1.09002 * 109.46321 * 179.97438 * 1 2 3 26 26 H 1.09001 * 109.47233 * 299.99817 * 1 2 3 27 27 H 1.08997 * 109.46891 * 239.99836 * 2 1 3 28 28 H 1.08995 * 109.46543 * 119.99992 * 2 1 3 29 29 H 1.09001 * 109.47088 * 270.14614 * 6 5 4 30 30 H 1.09003 * 109.47057 * 30.14895 * 6 5 4 31 31 H 1.08998 * 109.47185 * 150.14720 * 6 5 4 32 32 H 1.09002 * 109.47152 * 329.71154 * 8 7 5 33 33 H 1.09001 * 109.46980 * 209.71254 * 8 7 5 34 34 H 1.08996 * 109.46471 * 305.85679 * 10 9 8 35 35 H 1.09004 * 109.45929 * 65.82278 * 10 9 8 36 36 H 1.08992 * 109.50519 * 180.88071 * 11 10 9 37 37 H 1.09003 * 109.50071 * 60.76201 * 11 10 9 38 38 H 1.08999 * 109.52546 * 297.75036 * 12 11 10 39 39 H 0.96996 * 120.00279 * 180.02562 * 16 15 13 40 40 H 1.08994 * 109.50961 * 182.40006 * 21 12 11 41 41 H 1.09008 * 109.53352 * 62.30425 * 21 12 11 42 42 H 1.08996 * 109.46789 * 294.18136 * 22 9 8 43 43 H 1.09007 * 109.45854 * 54.15867 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2847 2.1362 1.0589 5 6 2.7184 3.3475 0.6676 6 6 3.1266 4.4811 1.5728 7 6 2.7195 3.3658 -0.6756 8 6 3.1277 4.5197 -1.5548 9 7 4.5661 4.4329 -1.8401 10 6 4.9467 3.0649 -2.2146 11 6 6.4676 2.9794 -2.3621 12 6 6.9277 3.9692 -3.4360 13 6 8.4303 3.9331 -3.5452 14 1 9.0071 4.8264 -3.3557 15 6 9.0686 2.7599 -3.8874 16 7 8.3663 1.6722 -4.1179 17 14 10.9312 2.7150 -4.0222 18 1 11.4823 4.0594 -3.7156 19 1 11.4737 1.7255 -3.0570 20 1 11.3184 2.3246 -5.4017 21 6 6.4767 5.3796 -3.0459 22 6 4.9556 5.3954 -2.8785 23 8 2.2924 2.1565 -1.0890 24 1 -0.3634 0.5138 -0.8900 25 1 -0.3632 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 2.2572 5.0999 1.7949 30 1 3.5319 4.0773 2.5006 31 1 3.8861 5.0860 1.0775 32 1 2.9146 5.4588 -1.0441 33 1 2.5687 4.4796 -2.4897 34 1 4.6174 2.3716 -1.4407 35 1 4.4746 2.8029 -3.1615 36 1 6.7484 1.9679 -2.6553 37 1 6.9399 3.2279 -1.4117 38 1 6.4860 3.6978 -4.3948 39 1 8.8154 0.8467 -4.3582 40 1 6.7642 6.0828 -3.8274 41 1 6.9493 5.6665 -2.1064 42 1 4.4835 5.1225 -3.8222 43 1 4.6329 6.3949 -2.5866 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573754361.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:16:04 Heat of formation + Delta-G solvation = -15.657187 kcal Electronic energy + Delta-G solvation = -22291.938312 eV Core-core repulsion = 19144.048207 eV Total energy + Delta-G solvation = -3147.890105 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -44.40703 -39.87591 -36.25601 -36.13333 -35.05742 -33.53176 -31.66112 -31.52954 -29.37075 -27.61509 -26.22753 -24.47952 -23.77536 -23.06793 -22.41810 -21.35446 -20.38131 -18.51597 -18.03415 -17.54987 -16.76116 -16.30364 -16.13443 -15.93552 -15.41622 -14.95557 -14.81310 -14.60609 -14.27283 -14.11861 -14.03984 -13.74726 -13.51423 -13.30956 -13.07843 -12.96992 -12.87859 -12.62456 -12.59763 -12.29490 -12.09545 -12.04989 -11.92225 -11.86363 -11.53141 -11.40318 -10.83644 -10.70286 -10.41112 -9.65173 -9.23355 -8.09582 -6.23145 0.38936 1.39065 1.41034 1.52471 1.59923 1.69423 2.42805 2.98605 3.04016 3.17921 3.65352 3.88387 4.03249 4.12875 4.19800 4.21957 4.26485 4.29034 4.39238 4.47155 4.58832 4.70253 4.73291 4.78404 4.80240 4.89977 4.92336 4.94245 4.98038 5.04385 5.10196 5.13255 5.20452 5.26381 5.30024 5.47046 5.52226 5.60422 5.92993 5.95251 6.12947 6.22627 6.38223 6.73537 6.89407 7.45228 8.95454 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021205 B = 0.004370 C = 0.003952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.100001 B = 6405.845860 C = 7082.793991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.029 4.029 3 C 0.186 3.814 4 N -0.508 5.508 5 C -0.007 4.007 6 C -0.067 4.067 7 C -0.061 4.061 8 C 0.142 3.858 9 N -0.533 5.533 10 C 0.080 3.920 11 C -0.092 4.092 12 C 0.043 3.957 13 C -0.530 4.530 14 H 0.054 0.946 15 C 0.010 3.990 16 N -0.921 5.921 17 Si 0.954 3.046 18 H -0.265 1.265 19 H -0.282 1.282 20 H -0.281 1.281 21 C -0.099 4.099 22 C 0.065 3.935 23 O -0.217 6.217 24 H 0.053 0.947 25 H 0.098 0.902 26 H 0.056 0.944 27 H 0.102 0.898 28 H 0.116 0.884 29 H 0.092 0.908 30 H 0.071 0.929 31 H 0.086 0.914 32 H 0.137 0.863 33 H 0.053 0.947 34 H 0.047 0.953 35 H 0.010 0.990 36 H 0.056 0.944 37 H 0.029 0.971 38 H -0.012 1.012 39 H 0.259 0.741 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.025 0.975 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.902 2.363 8.041 17.975 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.067 4.067 3 C -0.021 4.021 4 N -0.238 5.238 5 C -0.127 4.127 6 C -0.124 4.124 7 C -0.113 4.113 8 C 0.015 3.985 9 N -0.258 5.258 10 C -0.048 4.048 11 C -0.130 4.130 12 C 0.025 3.975 13 C -0.568 4.568 14 H 0.073 0.927 15 C -0.188 4.188 16 N -0.561 5.561 17 Si 0.779 3.221 18 H -0.189 1.189 19 H -0.208 1.208 20 H -0.206 1.206 21 C -0.137 4.137 22 C -0.062 4.062 23 O -0.105 6.105 24 H 0.072 0.928 25 H 0.116 0.884 26 H 0.075 0.925 27 H 0.121 0.879 28 H 0.134 0.866 29 H 0.111 0.889 30 H 0.090 0.910 31 H 0.105 0.895 32 H 0.155 0.845 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.028 0.972 36 H 0.075 0.925 37 H 0.047 0.953 38 H 0.006 0.994 39 H 0.068 0.932 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.044 0.956 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -15.703 2.105 8.975 18.209 hybrid contribution 0.872 -0.598 -1.732 2.029 sum -14.830 1.507 7.243 16.573 Atomic orbital electron populations 1.21736 0.91637 1.04293 1.02168 1.20332 0.97940 0.82233 1.06199 1.27089 0.98946 0.97796 0.78286 1.70342 1.18168 1.04328 1.30986 1.21974 1.02988 0.95211 0.92553 1.20206 1.02363 0.92605 0.97253 1.23239 1.06083 0.86541 0.95437 1.20712 0.87988 0.92888 0.96862 1.62213 1.13972 1.05573 1.44069 1.21901 0.97096 0.89380 0.96429 1.21399 0.91694 1.01843 0.98070 1.18672 0.94269 0.91983 0.92589 1.21632 0.93247 0.95839 1.46131 0.92741 1.25774 1.02569 0.95464 0.94994 1.70033 1.36614 1.00991 1.48433 0.85569 0.80665 0.78263 0.77557 1.18905 1.20839 1.20637 1.21542 0.94091 0.97562 1.00477 1.22145 0.96169 0.96264 0.91610 1.84411 1.64497 1.23095 1.38481 0.92820 0.88377 0.92494 0.87948 0.86619 0.88928 0.91009 0.89490 0.84535 0.92897 0.93489 0.97164 0.92522 0.95260 0.99395 0.93172 0.92115 0.92630 0.95639 0.87720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.11 9.90 71.99 0.71 -1.39 16 2 C -0.03 -0.57 6.56 29.85 0.20 -0.37 16 3 C 0.19 5.41 7.60 88.34 0.67 6.08 16 4 N -0.51 -16.07 11.29 -291.98 -3.30 -19.37 16 5 C -0.01 -0.21 7.11 41.26 0.29 0.08 16 6 C -0.07 -1.54 10.05 71.24 0.72 -0.82 16 7 C -0.06 -1.88 5.05 24.79 0.13 -1.76 16 8 C 0.14 3.89 5.43 85.56 0.46 4.35 16 9 N -0.53 -18.23 4.80 -900.91 -4.32 -22.55 16 10 C 0.08 3.36 4.99 86.33 0.43 3.79 16 11 C -0.09 -4.60 5.12 30.65 0.16 -4.45 16 12 C 0.04 2.22 2.16 -11.46 -0.02 2.20 16 13 C -0.53 -29.77 8.56 25.60 0.22 -29.55 16 14 H 0.05 2.99 7.75 -2.91 -0.02 2.97 16 15 C 0.01 0.57 5.31 84.66 0.45 1.02 16 16 N -0.92 -54.60 11.37 21.45 0.24 -54.35 16 17 Si 0.95 44.39 29.54 68.60 2.03 46.42 16 18 H -0.26 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.28 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 21 C -0.10 -4.00 5.32 30.65 0.16 -3.84 16 22 C 0.07 2.12 5.42 86.33 0.47 2.59 16 23 O -0.22 -7.09 10.02 -3.75 -0.04 -7.13 16 24 H 0.05 0.86 8.14 -2.39 -0.02 0.85 16 25 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 26 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 28 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 29 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.09 1.93 7.80 -2.39 -0.02 1.91 16 32 H 0.14 2.78 7.81 -2.39 -0.02 2.76 16 33 H 0.05 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.05 2.01 6.03 -2.39 -0.01 2.00 16 35 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 36 H 0.06 3.23 6.17 -2.39 -0.01 3.21 16 37 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 38 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 39 H 0.26 14.60 8.31 -92.71 -0.77 13.83 16 40 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 41 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 42 H 0.03 0.85 8.14 -2.39 -0.02 0.83 16 43 H 0.10 2.59 8.12 -2.38 -0.02 2.57 16 Total: -1.00 -68.30 342.85 0.62 -67.68 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.97 Total: 11.39 kcal Atomic # 6 Polarization: -27.12 SS G_CDS: 5.04 Total: -22.08 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -7.38 Total: -96.28 kcal Atomic # 8 Polarization: -7.09 SS G_CDS: -0.04 Total: -7.13 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -68.30 0.62 -67.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573754361.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.023 kcal (2) G-P(sol) polarization free energy of solvation -68.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.279 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.622 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds