Wall clock time and date at job start Tue Mar 31 2020 00:04:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.34331 * 126.44692 * 2 1 4 4 N 1.34478 * 107.67396 * 179.97438 * 3 2 1 5 5 C 1.30255 * 108.69684 * 359.97438 * 4 3 2 6 6 C 1.50706 * 125.61836 * 179.97438 * 5 4 3 7 7 H 1.08996 * 109.46822 * 195.02962 * 6 5 4 8 8 C 1.52997 * 109.47238 * 75.02180 * 6 5 4 9 9 N 1.46902 * 109.46577 * 315.02477 * 6 5 4 10 10 C 1.46847 * 111.00074 * 304.20444 * 9 6 5 11 11 C 1.53043 * 109.52242 * 174.16099 * 10 9 6 12 12 C 1.53116 * 109.27359 * 59.18722 * 11 10 9 13 13 C 1.53001 * 109.51982 * 182.43807 * 12 11 10 14 14 C 1.50694 * 109.47241 * 294.67915 * 13 12 11 15 15 H 1.08007 * 120.00017 * 0.02562 * 14 13 12 16 16 C 1.37884 * 120.00077 * 179.97438 * 14 13 12 17 17 N 1.31513 * 119.99859 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 119.99950 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47016 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.46869 * 120.00008 * 18 16 14 21 21 H 1.48496 * 109.47332 * 240.00099 * 18 16 14 22 22 C 1.53121 * 109.16142 * 302.34007 * 12 11 10 23 23 C 1.46855 * 110.99825 * 180.02562 * 9 6 5 24 24 O 1.33967 * 108.76391 * 0.22789 * 5 4 3 25 25 H 1.08995 * 109.47351 * 90.02746 * 1 2 3 26 26 H 1.09005 * 109.46842 * 210.02709 * 1 2 3 27 27 H 1.08995 * 109.46816 * 330.01851 * 1 2 3 28 28 H 1.08002 * 126.16237 * 359.94153 * 3 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 8 6 5 30 30 H 1.09001 * 109.46832 * 60.00314 * 8 6 5 31 31 H 1.09004 * 109.47261 * 300.00295 * 8 6 5 32 32 H 1.08990 * 109.46792 * 294.18274 * 10 9 6 33 33 H 1.09009 * 109.45678 * 54.15320 * 10 9 6 34 34 H 1.08999 * 109.50585 * 299.24589 * 11 10 9 35 35 H 1.08999 * 109.50241 * 179.12546 * 11 10 9 36 36 H 1.09004 * 109.52735 * 62.24724 * 12 11 10 37 37 H 1.08996 * 109.47341 * 54.68368 * 13 12 11 38 38 H 1.09003 * 109.47262 * 174.68171 * 13 12 11 39 39 H 0.97000 * 119.99538 * 179.97438 * 17 16 14 40 40 H 1.08997 * 109.50149 * 297.71888 * 22 12 11 41 41 H 1.08996 * 109.50554 * 177.59869 * 22 12 11 42 42 H 1.08999 * 109.45985 * 305.85562 * 23 9 6 43 43 H 1.09003 * 109.45716 * 65.81924 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0806 0.0000 4 7 3.5783 0.6478 0.0006 5 6 3.5765 -0.6548 0.0015 6 6 4.8005 -1.5341 0.0018 7 1 4.5164 -2.5523 -0.2639 8 6 5.4325 -1.5279 1.3951 9 7 5.7695 -1.0246 -0.9777 10 6 5.1647 -0.9221 -2.3120 11 6 6.1527 -0.2545 -3.2714 12 6 7.4363 -1.0868 -3.3350 13 6 8.4511 -0.3926 -4.2456 14 6 7.9272 -0.3727 -5.6584 15 1 6.9663 -0.8110 -5.8842 16 6 8.6742 0.2060 -6.6626 17 7 9.8440 0.7401 -6.3875 18 14 8.0244 0.2312 -8.4137 19 1 6.6950 -0.4291 -8.4580 20 1 7.8937 1.6374 -8.8729 21 1 8.9677 -0.4939 -9.3023 22 6 8.0199 -1.2190 -1.9256 23 6 6.9777 -1.8590 -1.0056 24 8 2.3075 -1.0840 -0.0036 25 1 -0.3634 -0.0005 -1.0276 26 1 -0.3633 -0.8898 0.5143 27 1 -0.3633 0.8901 0.5135 28 1 1.9822 2.1112 -0.0009 29 1 6.3180 -2.1635 1.3952 30 1 4.7135 -1.9059 2.1219 31 1 5.7166 -0.5096 1.6607 32 1 4.9208 -1.9194 -2.6778 33 1 4.2551 -0.3243 -2.2534 34 1 6.3864 0.7482 -2.9135 35 1 5.7094 -0.1926 -4.2652 36 1 7.2091 -2.0772 -3.7296 37 1 8.6080 0.6298 -3.9018 38 1 9.3962 -0.9348 -4.2162 39 1 10.3696 1.1469 -7.0940 40 1 8.2830 -0.2315 -1.5466 41 1 8.9107 -1.8463 -1.9579 42 1 7.3851 -1.9419 0.0020 43 1 6.7248 -2.8518 -1.3778 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000577390315.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:04:08 Heat of formation + Delta-G solvation = -12.067544 kcal Electronic energy + Delta-G solvation = -22066.923732 eV Core-core repulsion = 18919.189286 eV Total energy + Delta-G solvation = -3147.734446 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -44.34672 -40.31737 -36.93028 -35.65430 -34.73680 -33.27959 -32.10605 -31.58795 -28.98996 -27.74663 -25.97710 -24.61795 -23.70071 -23.05097 -22.27190 -21.32847 -20.46812 -18.44367 -18.13697 -17.84826 -17.13390 -16.51246 -16.00061 -15.64692 -15.24565 -15.09759 -14.86163 -14.56773 -14.46494 -14.19747 -13.90589 -13.75971 -13.42602 -13.24790 -13.20856 -12.98696 -12.87146 -12.55432 -12.49732 -12.33481 -12.28236 -12.16794 -12.01252 -11.61244 -11.39652 -11.26871 -10.92325 -10.68416 -10.52676 -9.60562 -9.31207 -8.17383 -6.26735 0.43041 1.38191 1.38787 1.51512 1.55415 1.73558 2.41316 2.83038 3.09473 3.15670 3.82165 3.91294 3.94707 4.02674 4.08791 4.13766 4.16302 4.35291 4.43631 4.51195 4.54949 4.60917 4.67054 4.72516 4.73769 4.80095 4.85034 4.99567 5.04312 5.08519 5.15215 5.18994 5.24617 5.36517 5.39717 5.40865 5.42617 5.57868 5.80583 5.88965 6.02886 6.11389 6.30446 6.82975 6.89543 7.41412 8.94754 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021456 B = 0.003999 C = 0.003531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.698835 B = 6999.370534 C = 7927.080184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C -0.050 4.050 3 C -0.070 4.070 4 N -0.484 5.484 5 C 0.181 3.819 6 C 0.180 3.820 7 H 0.078 0.922 8 C -0.135 4.135 9 N -0.531 5.531 10 C 0.073 3.927 11 C -0.088 4.088 12 C -0.074 4.074 13 C 0.034 3.966 14 C -0.529 4.529 15 H 0.058 0.942 16 C -0.002 4.002 17 N -0.935 5.935 18 Si 0.960 3.040 19 H -0.263 1.263 20 H -0.280 1.280 21 H -0.277 1.277 22 C -0.106 4.106 23 C 0.065 3.935 24 O -0.216 6.216 25 H 0.094 0.906 26 H 0.087 0.913 27 H 0.115 0.885 28 H 0.201 0.799 29 H 0.094 0.906 30 H 0.077 0.923 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.055 0.945 34 H 0.043 0.957 35 H 0.052 0.948 36 H 0.052 0.948 37 H -0.015 1.015 38 H -0.010 1.010 39 H 0.262 0.738 40 H 0.053 0.947 41 H 0.072 0.928 42 H 0.105 0.895 43 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.708 -5.848 16.849 25.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.103 4.103 3 C -0.208 4.208 4 N -0.213 5.213 5 C -0.026 4.026 6 C 0.071 3.929 7 H 0.095 0.905 8 C -0.192 4.192 9 N -0.258 5.258 10 C -0.055 4.055 11 C -0.126 4.126 12 C -0.093 4.093 13 C -0.003 4.003 14 C -0.567 4.567 15 H 0.076 0.924 16 C -0.199 4.199 17 N -0.576 5.576 18 Si 0.785 3.215 19 H -0.187 1.187 20 H -0.206 1.206 21 H -0.203 1.203 22 C -0.144 4.144 23 C -0.062 4.062 24 O -0.103 6.103 25 H 0.112 0.888 26 H 0.106 0.894 27 H 0.133 0.867 28 H 0.218 0.782 29 H 0.112 0.888 30 H 0.096 0.904 31 H 0.079 0.921 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.004 0.996 38 H 0.009 0.991 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.123 0.877 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -16.907 -4.981 16.926 24.436 hybrid contribution -0.660 -0.512 -1.593 1.799 sum -17.567 -5.494 15.333 23.955 Atomic orbital electron populations 1.20486 0.80755 1.05863 1.04921 1.24293 0.96610 0.83845 1.05553 1.23626 0.87522 1.01809 1.07816 1.70467 1.23860 1.09927 1.17068 1.26245 0.84242 0.90461 1.01677 1.19981 0.84029 0.92797 0.96130 0.90472 1.21879 1.01836 1.03691 0.91842 1.61802 1.05854 1.52226 1.05879 1.21936 0.96538 0.98610 0.88438 1.21342 0.95312 0.98506 0.97434 1.21097 0.95214 0.97946 0.95001 1.18996 0.93680 0.93879 0.93709 1.21684 1.04118 1.36564 0.94382 0.92375 1.25949 0.95181 0.95183 1.03629 1.70111 1.13325 1.39885 1.34231 0.85475 0.78719 0.77845 0.79490 1.18706 1.20614 1.20290 1.21598 0.97790 1.00975 0.94012 1.22210 0.89116 0.93645 1.01219 1.84371 1.17963 1.37635 1.70332 0.88760 0.89438 0.86692 0.78199 0.88763 0.90449 0.92130 0.94665 0.92672 0.93841 0.92907 0.92915 0.99637 0.99117 0.92939 0.92802 0.90990 0.87660 0.93702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.66 10.43 71.24 0.74 0.09 16 2 C -0.05 -1.05 7.39 24.79 0.18 -0.87 16 3 C -0.07 -1.69 11.80 83.39 0.98 -0.70 16 4 N -0.48 -14.92 10.98 -303.82 -3.33 -18.26 16 5 C 0.18 5.02 5.49 88.34 0.49 5.51 16 6 C 0.18 4.34 2.62 44.17 0.12 4.46 16 7 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 8 C -0.13 -2.53 8.95 71.98 0.64 -1.88 16 9 N -0.53 -15.63 4.51 -875.46 -3.94 -19.57 16 10 C 0.07 2.44 5.22 86.33 0.45 2.89 16 11 C -0.09 -3.60 5.15 30.65 0.16 -3.44 16 12 C -0.07 -3.13 2.20 -10.71 -0.02 -3.15 16 13 C 0.03 1.87 4.45 29.85 0.13 2.00 16 14 C -0.53 -30.73 8.45 25.60 0.22 -30.52 16 15 H 0.06 3.26 7.08 -2.91 -0.02 3.24 16 16 C 0.00 -0.13 5.46 84.66 0.46 0.33 16 17 N -0.93 -58.35 13.29 21.45 0.28 -58.07 16 18 Si 0.96 45.46 29.54 68.60 2.03 47.48 16 19 H -0.26 -11.89 7.11 99.48 0.71 -11.19 16 20 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 21 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 22 C -0.11 -3.65 5.38 30.65 0.16 -3.48 16 23 C 0.06 1.71 5.22 86.32 0.45 2.16 16 24 O -0.22 -5.52 10.78 -3.76 -0.04 -5.56 16 25 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.11 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.20 3.66 8.06 -2.91 -0.02 3.63 16 29 H 0.09 1.38 6.28 -2.39 -0.01 1.37 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 32 H 0.04 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.05 1.93 6.52 -2.38 -0.02 1.92 16 34 H 0.04 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.05 2.31 7.05 -2.39 -0.02 2.29 16 36 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 37 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 38 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 39 H 0.26 15.32 8.31 -92.71 -0.77 14.55 16 40 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 41 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 42 H 0.11 2.19 6.01 -2.39 -0.01 2.18 16 43 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 Total: -1.00 -72.67 341.92 1.13 -71.54 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: 0.97 Total: 9.05 kcal Atomic # 6 Polarization: -31.79 SS G_CDS: 5.17 Total: -26.62 kcal Atomic # 7 Polarization: -88.90 SS G_CDS: -6.99 Total: -95.89 kcal Atomic # 8 Polarization: -5.52 SS G_CDS: -0.04 Total: -5.56 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.48 kcal Total: -72.67 1.13 -71.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000577390315.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.472 kcal (2) G-P(sol) polarization free energy of solvation -72.670 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.199 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.539 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds