Wall clock time and date at job start Tue Mar 31 2020 00:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47020 * 2 1 4 4 C 1.50699 * 109.47237 * 179.97438 * 3 2 1 5 5 N 1.34654 * 125.80401 * 264.97573 * 4 3 2 6 6 H 0.96999 * 124.85551 * 0.03861 * 5 4 3 7 7 C 1.36450 * 110.30162 * 180.02562 * 5 4 3 8 8 C 1.34489 * 108.85417 * 0.22655 * 7 5 4 9 9 C 1.36767 * 125.80031 * 85.00001 * 4 3 2 10 10 C 1.47264 * 126.94333 * 359.97438 * 9 4 3 11 11 O 1.21626 * 119.99838 * 43.89489 * 10 9 4 12 12 N 1.34776 * 120.00263 * 223.89270 * 10 9 4 13 13 C 1.46499 * 120.00336 * 184.99977 * 12 10 9 14 14 C 1.50696 * 109.47323 * 89.99923 * 13 12 10 15 15 H 1.08003 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00202 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47105 * 60.00121 * 18 16 14 20 20 H 1.48503 * 109.47212 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47387 * 300.00049 * 18 16 14 22 22 C 1.46501 * 119.99773 * 5.00277 * 12 10 9 23 23 C 1.52998 * 109.47139 * 125.48769 * 22 12 10 24 24 C 1.53003 * 109.46763 * 245.48310 * 22 12 10 25 25 H 1.09004 * 109.46945 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47735 * 299.99962 * 1 2 3 27 27 H 1.09005 * 109.47068 * 60.00644 * 1 2 3 28 28 H 1.08997 * 109.47362 * 239.99653 * 2 1 3 29 29 H 1.09004 * 109.47287 * 119.99860 * 2 1 3 30 30 H 1.09008 * 109.47316 * 60.00076 * 3 2 1 31 31 H 1.08997 * 109.47489 * 299.99621 * 3 2 1 32 32 H 1.08000 * 125.57632 * 179.97438 * 7 5 4 33 33 H 1.07997 * 126.83514 * 179.75312 * 8 7 5 34 34 H 1.09000 * 109.47208 * 210.00573 * 13 12 10 35 35 H 1.09001 * 109.46958 * 330.00047 * 13 12 10 36 36 H 0.97004 * 119.99703 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47224 * 5.48085 * 22 12 10 38 38 H 1.08997 * 109.47621 * 59.99559 * 23 22 12 39 39 H 1.09002 * 109.47034 * 180.02562 * 23 22 12 40 40 H 1.09003 * 109.46954 * 299.99555 * 23 22 12 41 41 H 1.09004 * 109.47017 * 60.00358 * 24 22 12 42 42 H 1.09002 * 109.46739 * 179.97438 * 24 22 12 43 43 H 1.08997 * 109.47066 * 299.99871 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3342 1.5384 1.0888 6 1 4.0126 1.6181 2.0005 7 6 5.6492 1.5070 0.7260 8 6 5.7284 1.3946 -0.6118 9 6 4.3474 1.3457 -1.1041 10 6 3.9112 1.2224 -2.5052 11 8 3.0058 1.9184 -2.9237 12 7 4.5152 0.3383 -3.3238 13 6 4.1573 0.2917 -4.7436 14 6 5.0458 1.2317 -5.5168 15 1 5.8018 1.8061 -5.0021 16 6 4.8936 1.3585 -6.8812 17 7 3.9733 0.6586 -7.5081 18 14 5.9945 2.5242 -7.8395 19 1 7.4124 2.1152 -7.6732 20 1 5.6319 2.4769 -9.2788 21 1 5.8151 3.9069 -7.3286 22 6 5.5296 -0.5761 -2.7937 23 6 5.1453 -2.0172 -3.1347 24 6 6.8874 -0.2489 -3.4184 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4892 1.5671 1.4022 33 1 6.6294 1.3479 -1.2054 34 1 4.2888 -0.7234 -5.1183 35 1 3.1167 0.5921 -4.8660 36 1 3.8660 0.7481 -8.4680 37 1 5.5909 -0.4627 -1.7113 38 1 5.0840 -2.1306 -4.2170 39 1 5.8998 -2.6976 -2.7399 40 1 4.1780 -2.2503 -2.6896 41 1 7.1612 0.7778 -3.1755 42 1 7.6423 -0.9290 -3.0237 43 1 6.8261 -0.3623 -4.5008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000582779239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:43 Heat of formation + Delta-G solvation = -7.672710 kcal Electronic energy + Delta-G solvation = -22760.034454 eV Core-core repulsion = 19612.490582 eV Total energy + Delta-G solvation = -3147.543872 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.05694 -38.45205 -35.75410 -34.80735 -32.74426 -30.84625 -30.59491 -29.78820 -27.30101 -26.60412 -25.75897 -23.28616 -21.81007 -21.43365 -20.47287 -20.15068 -17.64228 -17.28312 -16.31067 -15.74066 -15.08539 -14.85690 -14.36760 -14.14147 -13.91161 -13.80217 -13.46390 -13.03042 -12.87986 -12.68645 -12.63974 -12.14569 -11.99508 -11.73198 -11.57334 -11.35893 -11.18866 -11.14526 -11.06934 -10.82877 -10.67595 -10.60551 -10.47031 -10.21330 -9.87512 -9.41949 -8.81928 -8.39582 -8.30508 -7.92067 -7.41024 -5.92712 -3.95456 2.27285 2.76455 3.34398 3.38547 3.42664 3.46550 4.03496 4.25133 4.55736 4.84401 5.00073 5.13727 5.17001 5.39591 5.43104 5.49209 5.55129 5.55958 5.72867 5.78743 5.85330 5.90366 5.95723 6.08416 6.12898 6.16870 6.24338 6.32829 6.36029 6.41698 6.46213 6.52674 6.77334 7.02832 7.11123 7.16217 7.35248 7.62768 7.64777 7.78542 8.06418 8.39020 8.70286 9.05027 9.36498 9.68882 11.15162 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.005620 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.234205 B = 4980.627104 C = 5400.426867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.116 4.116 3 C -0.060 4.060 4 C 0.078 3.922 5 N -0.557 5.557 6 H 0.410 0.590 7 C -0.026 4.026 8 C -0.166 4.166 9 C -0.205 4.205 10 C 0.580 3.420 11 O -0.550 6.550 12 N -0.585 5.585 13 C 0.245 3.755 14 C -0.516 4.516 15 H 0.057 0.943 16 C 0.060 3.940 17 N -0.897 5.897 18 Si 0.893 3.107 19 H -0.278 1.278 20 H -0.288 1.288 21 H -0.277 1.277 22 C 0.131 3.869 23 C -0.160 4.160 24 C -0.158 4.158 25 H 0.054 0.946 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.068 0.932 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.103 0.897 32 H 0.164 0.836 33 H 0.145 0.855 34 H 0.034 0.966 35 H 0.041 0.959 36 H 0.262 0.738 37 H 0.087 0.913 38 H 0.067 0.933 39 H 0.055 0.945 40 H 0.049 0.951 41 H 0.051 0.949 42 H 0.046 0.954 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.105 -3.541 18.761 19.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.154 4.154 3 C -0.098 4.098 4 C -0.037 4.037 5 N -0.152 5.152 6 H 0.245 0.755 7 C -0.153 4.153 8 C -0.191 4.191 9 C -0.215 4.215 10 C 0.368 3.632 11 O -0.429 6.429 12 N -0.316 5.316 13 C 0.126 3.874 14 C -0.555 4.555 15 H 0.076 0.924 16 C -0.142 4.142 17 N -0.537 5.537 18 Si 0.721 3.279 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.026 3.974 23 C -0.218 4.218 24 C -0.216 4.216 25 H 0.073 0.927 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.087 0.913 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.121 0.879 32 H 0.181 0.819 33 H 0.162 0.838 34 H 0.052 0.948 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.105 0.895 38 H 0.086 0.914 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.065 0.935 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 0.536 -3.219 18.437 18.723 hybrid contribution 0.779 0.711 -0.212 1.076 sum 1.315 -2.508 18.225 18.444 Atomic orbital electron populations 1.21760 0.95500 1.01646 1.01929 1.21465 0.95863 0.95820 1.02206 1.20343 0.87289 0.98067 1.04064 1.20138 0.93031 1.04691 0.85869 1.41456 1.06101 1.59323 1.08361 0.75474 1.21613 0.85534 1.11745 0.96448 1.22125 0.96133 1.07504 0.93308 1.20487 0.93087 1.14690 0.93246 1.17340 0.81964 0.80168 0.83750 1.90712 1.30744 1.44794 1.76670 1.48120 1.38294 1.34174 1.11030 1.19228 0.97279 0.97228 0.73690 1.21449 1.17771 1.24178 0.92121 0.92435 1.24915 0.95623 0.95996 0.97637 1.69930 1.33185 1.41230 1.09310 0.86634 0.80773 0.81711 0.78738 1.20332 1.21336 1.20297 1.21094 0.88646 0.89135 0.98529 1.22139 1.00643 0.95952 1.03095 1.22187 0.95371 1.00490 1.03597 0.92716 0.93060 0.92112 0.91296 0.92624 0.91617 0.87906 0.81850 0.83772 0.94800 0.94056 0.92872 0.89497 0.91360 0.92600 0.93139 0.92975 0.93509 0.90259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.91 37.16 0.37 -1.26 16 2 C -0.12 -1.43 5.92 -26.74 -0.16 -1.59 16 3 C -0.06 -0.80 5.51 -27.89 -0.15 -0.95 16 4 C 0.08 1.16 6.43 -81.89 -0.53 0.63 16 5 N -0.56 -6.19 5.90 -9.11 -0.05 -6.24 16 6 H 0.41 3.03 8.96 -40.82 -0.37 2.67 16 7 C -0.03 -0.30 11.89 -16.82 -0.20 -0.50 16 8 C -0.17 -2.50 8.76 -37.50 -0.33 -2.83 16 9 C -0.21 -3.71 5.15 -103.35 -0.53 -4.24 16 10 C 0.58 13.20 7.38 -12.59 -0.09 13.11 16 11 O -0.55 -14.62 15.46 5.25 0.08 -14.54 16 12 N -0.59 -13.10 2.39 -168.79 -0.40 -13.50 16 13 C 0.24 6.55 4.77 -5.20 -0.02 6.52 16 14 C -0.52 -14.76 7.86 -34.44 -0.27 -15.03 16 15 H 0.06 1.65 7.59 -52.48 -0.40 1.25 16 16 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 17 N -0.90 -27.02 13.29 55.43 0.74 -26.28 16 18 Si 0.89 22.28 29.54 -169.99 -5.02 17.26 16 19 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 20 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 21 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 22 C 0.13 2.34 2.63 -67.93 -0.18 2.16 16 23 C -0.16 -2.61 9.06 37.16 0.34 -2.28 16 24 C -0.16 -2.77 8.32 37.16 0.31 -2.46 16 25 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.10 1.70 6.98 -51.93 -0.36 1.34 16 32 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 33 H 0.14 2.12 6.56 -52.49 -0.34 1.78 16 34 H 0.03 0.91 6.15 -51.93 -0.32 0.59 16 35 H 0.04 1.26 7.36 -51.93 -0.38 0.87 16 36 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 37 H 0.09 1.42 4.78 -51.93 -0.25 1.18 16 38 H 0.07 1.24 6.51 -51.93 -0.34 0.91 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.93 7.22 -51.93 -0.38 0.55 16 42 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.08 1.62 6.93 -51.93 -0.36 1.26 16 LS Contribution 345.62 15.07 5.21 5.21 Total: -1.00 -34.05 345.62 -7.86 -41.90 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -6.86 Total: 3.29 kcal Atomic # 6 Polarization: -5.54 SS G_CDS: -1.55 Total: -7.09 kcal Atomic # 7 Polarization: -46.31 SS G_CDS: 0.28 Total: -46.03 kcal Atomic # 8 Polarization: -14.62 SS G_CDS: 0.08 Total: -14.54 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -34.05 -7.86 -41.90 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582779239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.229 kcal (2) G-P(sol) polarization free energy of solvation -34.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.902 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.673 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds