Wall clock time and date at job start Tue Mar 31 2020 00:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.52995 * 109.47020 * 2 1 4 4 C 1.50699 * 109.47237 * 179.97438 * 3 2 1 5 5 N 1.34654 * 125.80401 * 264.97573 * 4 3 2 6 6 H 0.96999 * 124.85551 * 0.03861 * 5 4 3 7 7 C 1.36450 * 110.30162 * 180.02562 * 5 4 3 8 8 C 1.34489 * 108.85417 * 0.22655 * 7 5 4 9 9 C 1.36767 * 125.80031 * 85.00001 * 4 3 2 10 10 C 1.47264 * 126.94333 * 359.97438 * 9 4 3 11 11 O 1.21626 * 119.99838 * 43.89489 * 10 9 4 12 12 N 1.34776 * 120.00263 * 223.89270 * 10 9 4 13 13 C 1.46499 * 120.00336 * 184.99977 * 12 10 9 14 14 C 1.50696 * 109.47323 * 89.99923 * 13 12 10 15 15 H 1.08003 * 119.99820 * 0.02562 * 14 13 12 16 16 C 1.37872 * 120.00202 * 180.02562 * 14 13 12 17 17 N 1.31514 * 119.99970 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 120.00012 * 179.97438 * 16 14 13 19 19 H 1.48502 * 109.47105 * 60.00121 * 18 16 14 20 20 H 1.48503 * 109.47212 * 179.97438 * 18 16 14 21 21 H 1.48496 * 109.47387 * 300.00049 * 18 16 14 22 22 C 1.46501 * 119.99773 * 5.00277 * 12 10 9 23 23 C 1.52998 * 109.47139 * 125.48769 * 22 12 10 24 24 C 1.53003 * 109.46763 * 245.48310 * 22 12 10 25 25 H 1.09004 * 109.46945 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47735 * 299.99962 * 1 2 3 27 27 H 1.09005 * 109.47068 * 60.00644 * 1 2 3 28 28 H 1.08997 * 109.47362 * 239.99653 * 2 1 3 29 29 H 1.09004 * 109.47287 * 119.99860 * 2 1 3 30 30 H 1.09008 * 109.47316 * 60.00076 * 3 2 1 31 31 H 1.08997 * 109.47489 * 299.99621 * 3 2 1 32 32 H 1.08000 * 125.57632 * 179.97438 * 7 5 4 33 33 H 1.07997 * 126.83514 * 179.75312 * 8 7 5 34 34 H 1.09000 * 109.47208 * 210.00573 * 13 12 10 35 35 H 1.09001 * 109.46958 * 330.00047 * 13 12 10 36 36 H 0.97004 * 119.99703 * 179.97438 * 17 16 14 37 37 H 1.08997 * 109.47224 * 5.48085 * 22 12 10 38 38 H 1.08997 * 109.47621 * 59.99559 * 23 22 12 39 39 H 1.09002 * 109.47034 * 180.02562 * 23 22 12 40 40 H 1.09003 * 109.46954 * 299.99555 * 23 22 12 41 41 H 1.09004 * 109.47017 * 60.00358 * 24 22 12 42 42 H 1.09002 * 109.46739 * 179.97438 * 24 22 12 43 43 H 1.08997 * 109.47066 * 299.99871 * 24 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5469 1.4425 0.0006 5 7 4.3342 1.5384 1.0888 6 1 4.0126 1.6181 2.0005 7 6 5.6492 1.5070 0.7260 8 6 5.7284 1.3946 -0.6118 9 6 4.3474 1.3457 -1.1041 10 6 3.9112 1.2224 -2.5052 11 8 3.0058 1.9184 -2.9237 12 7 4.5152 0.3383 -3.3238 13 6 4.1573 0.2917 -4.7436 14 6 5.0458 1.2317 -5.5168 15 1 5.8018 1.8061 -5.0021 16 6 4.8936 1.3585 -6.8812 17 7 3.9733 0.6586 -7.5081 18 14 5.9945 2.5242 -7.8395 19 1 7.4124 2.1152 -7.6732 20 1 5.6319 2.4769 -9.2788 21 1 5.8151 3.9069 -7.3286 22 6 5.5296 -0.5761 -2.7937 23 6 5.1453 -2.0172 -3.1347 24 6 6.8874 -0.2489 -3.4184 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 6.4892 1.5671 1.4022 33 1 6.6294 1.3479 -1.2054 34 1 4.2888 -0.7234 -5.1183 35 1 3.1167 0.5921 -4.8660 36 1 3.8660 0.7481 -8.4680 37 1 5.5909 -0.4627 -1.7113 38 1 5.0840 -2.1306 -4.2170 39 1 5.8998 -2.6976 -2.7399 40 1 4.1780 -2.2503 -2.6896 41 1 7.1612 0.7778 -3.1755 42 1 7.6423 -0.9290 -3.0237 43 1 6.8261 -0.3623 -4.5008 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000582779239.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:19:42 Heat of formation + Delta-G solvation = -29.638065 kcal Electronic energy + Delta-G solvation = -22760.986943 eV Core-core repulsion = 19612.490582 eV Total energy + Delta-G solvation = -3148.496361 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.20141 -40.13810 -37.45774 -35.85203 -34.92065 -32.34763 -32.07379 -30.83713 -29.26635 -28.00812 -26.92841 -25.20533 -23.33318 -22.52779 -21.63888 -21.55484 -19.07232 -18.59614 -18.46761 -17.25303 -16.85398 -16.17870 -16.01235 -15.61659 -15.17389 -15.00678 -14.80417 -14.56350 -14.26178 -14.07982 -13.86105 -13.67151 -13.36136 -13.32603 -13.20811 -12.83649 -12.72999 -12.68148 -12.48952 -12.20141 -12.19190 -12.13379 -12.05176 -11.65857 -11.60789 -11.47544 -10.60366 -10.57743 -9.58439 -9.31244 -9.00657 -8.16525 -6.29268 1.01956 1.35925 1.40548 1.47654 1.65377 2.28699 2.36960 2.47887 2.70245 3.11860 3.80727 3.98169 4.05357 4.12229 4.16164 4.33467 4.37418 4.48863 4.54188 4.59805 4.71894 4.81269 4.86461 4.87571 4.94543 5.01185 5.05227 5.10946 5.11604 5.17246 5.20621 5.28128 5.37527 5.39197 5.44613 5.61957 5.68524 5.87035 5.98528 6.10764 6.16411 6.76803 6.80218 6.97652 7.34649 7.64138 8.90255 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017930 B = 0.005620 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1561.234205 B = 4980.627104 C = 5400.426867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.110 4.110 3 C -0.059 4.059 4 C 0.086 3.914 5 N -0.533 5.533 6 H 0.434 0.566 7 C 0.013 3.987 8 C -0.196 4.196 9 C -0.251 4.251 10 C 0.571 3.429 11 O -0.608 6.608 12 N -0.590 5.590 13 C 0.264 3.736 14 C -0.527 4.527 15 H 0.052 0.948 16 C 0.006 3.994 17 N -0.931 5.931 18 Si 0.963 3.037 19 H -0.260 1.260 20 H -0.278 1.278 21 H -0.280 1.280 22 C 0.126 3.874 23 C -0.155 4.155 24 C -0.150 4.150 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.037 0.963 28 H 0.030 0.970 29 H 0.083 0.917 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.215 0.785 33 H 0.143 0.857 34 H 0.026 0.974 35 H -0.011 1.011 36 H 0.265 0.735 37 H 0.112 0.888 38 H 0.040 0.960 39 H 0.096 0.904 40 H 0.047 0.953 41 H 0.044 0.956 42 H 0.089 0.911 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.318 -3.676 22.384 22.926 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.148 4.148 3 C -0.097 4.097 4 C -0.032 4.032 5 N -0.130 5.130 6 H 0.274 0.726 7 C -0.115 4.115 8 C -0.220 4.220 9 C -0.261 4.261 10 C 0.361 3.639 11 O -0.492 6.492 12 N -0.320 5.320 13 C 0.142 3.858 14 C -0.565 4.565 15 H 0.070 0.930 16 C -0.192 4.192 17 N -0.571 5.571 18 Si 0.787 3.213 19 H -0.184 1.184 20 H -0.203 1.203 21 H -0.206 1.206 22 C 0.023 3.977 23 C -0.213 4.213 24 C -0.208 4.208 25 H 0.083 0.917 26 H 0.095 0.905 27 H 0.056 0.944 28 H 0.049 0.951 29 H 0.101 0.899 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.232 0.768 33 H 0.161 0.839 34 H 0.044 0.956 35 H 0.008 0.992 36 H 0.074 0.926 37 H 0.130 0.870 38 H 0.059 0.941 39 H 0.115 0.885 40 H 0.067 0.933 41 H 0.063 0.937 42 H 0.108 0.892 43 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 2.782 -3.384 22.118 22.547 hybrid contribution 0.056 0.734 -1.240 1.442 sum 2.838 -2.651 20.878 21.236 Atomic orbital electron populations 1.21750 0.94414 1.02365 1.02072 1.21410 0.96827 0.94935 1.01592 1.20327 0.86883 0.98703 1.03807 1.20133 0.93513 1.03362 0.86207 1.41421 1.05704 1.57269 1.08627 0.72594 1.22245 0.86467 1.07224 0.95583 1.22178 0.94501 1.10290 0.95053 1.20219 0.95766 1.19004 0.91096 1.18176 0.80885 0.78984 0.85823 1.90656 1.33341 1.46940 1.78252 1.48148 1.39365 1.35173 1.09292 1.18653 0.94157 0.96160 0.76781 1.21633 1.17758 1.24407 0.92727 0.93003 1.25823 0.97086 0.97650 0.98682 1.70060 1.34686 1.42647 1.09727 0.85544 0.79545 0.78853 0.77336 1.18399 1.20337 1.20586 1.21436 0.87595 0.88851 0.99781 1.22102 1.01964 0.95817 1.01373 1.22099 0.96178 1.01250 1.01289 0.91737 0.90483 0.94374 0.95056 0.89881 0.87830 0.92105 0.76838 0.83930 0.95638 0.99243 0.92600 0.86994 0.94123 0.88540 0.93343 0.93685 0.89234 0.93817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.13 9.91 71.98 0.71 -2.42 16 2 C -0.11 -2.66 5.92 30.59 0.18 -2.47 16 3 C -0.06 -1.56 5.51 29.85 0.16 -1.39 16 4 C 0.09 2.41 6.43 41.78 0.27 2.68 16 5 N -0.53 -9.49 5.90 -182.72 -1.08 -10.57 16 6 H 0.43 3.92 8.96 -92.71 -0.83 3.09 16 7 C 0.01 0.24 11.89 83.12 0.99 1.23 16 8 C -0.20 -5.49 8.76 23.62 0.21 -5.28 16 9 C -0.25 -9.11 5.15 -19.04 -0.10 -9.20 16 10 C 0.57 27.68 7.38 86.62 0.64 28.32 16 11 O -0.61 -35.32 15.46 -4.11 -0.06 -35.39 16 12 N -0.59 -28.08 2.39 -806.18 -1.92 -30.01 16 13 C 0.26 15.25 4.77 85.63 0.41 15.66 16 14 C -0.53 -31.74 7.86 25.60 0.20 -31.53 16 15 H 0.05 3.11 7.59 -2.91 -0.02 3.09 16 16 C 0.01 0.35 5.46 84.65 0.46 0.81 16 17 N -0.93 -58.55 13.29 21.45 0.28 -58.27 16 18 Si 0.96 46.82 29.54 68.60 2.03 48.84 16 19 H -0.26 -11.80 7.11 99.48 0.71 -11.09 16 20 H -0.28 -13.03 7.11 99.48 0.71 -12.32 16 21 H -0.28 -13.68 7.11 99.48 0.71 -12.98 16 22 C 0.13 4.55 2.63 44.99 0.12 4.67 16 23 C -0.15 -5.05 9.06 71.98 0.65 -4.40 16 24 C -0.15 -5.18 8.32 71.98 0.60 -4.59 16 25 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 26 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.04 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.55 8.14 -2.38 -0.02 1.53 16 30 H 0.10 1.89 8.14 -2.38 -0.02 1.87 16 31 H 0.06 2.16 6.98 -2.39 -0.02 2.14 16 32 H 0.22 1.77 8.06 -2.91 -0.02 1.75 16 33 H 0.14 3.95 6.56 -2.91 -0.02 3.93 16 34 H 0.03 1.50 6.15 -2.39 -0.01 1.48 16 35 H -0.01 -0.71 7.36 -2.39 -0.02 -0.73 16 36 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 37 H 0.11 3.54 4.78 -2.39 -0.01 3.53 16 38 H 0.04 1.54 6.51 -2.39 -0.02 1.52 16 39 H 0.10 2.34 8.14 -2.39 -0.02 2.32 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.04 1.59 7.22 -2.38 -0.02 1.57 16 42 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 43 H 0.04 1.81 6.93 -2.39 -0.02 1.80 16 Total: -1.00 -82.72 345.62 4.92 -77.80 By element: Atomic # 1 Polarization: 15.34 SS G_CDS: 0.17 Total: 15.51 kcal Atomic # 6 Polarization: -13.43 SS G_CDS: 5.50 Total: -7.92 kcal Atomic # 7 Polarization: -96.13 SS G_CDS: -2.72 Total: -98.84 kcal Atomic # 8 Polarization: -35.32 SS G_CDS: -0.06 Total: -35.39 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.84 kcal Total: -82.72 4.92 -77.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000582779239.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.163 kcal (2) G-P(sol) polarization free energy of solvation -82.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds