Wall clock time and date at job start Tue Mar 31 2020 00:27:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.53006 * 109.47127 * 300.00129 * 4 3 2 6 6 C 1.52999 * 109.47317 * 59.99639 * 4 3 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 4 3 2 8 8 N 1.29948 * 126.28418 * 0.03037 * 7 4 3 9 9 O 1.21300 * 110.25087 * 179.97438 * 8 7 4 10 10 C 1.33647 * 109.81284 * 359.97438 * 9 8 7 11 11 C 1.50693 * 126.55310 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47670 * 269.97969 * 11 10 9 13 13 C 1.52996 * 109.47304 * 180.02562 * 12 11 10 14 14 C 1.53011 * 109.47124 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.46962 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00245 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99960 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99395 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47083 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47107 * 120.00247 * 19 17 15 22 22 H 1.48501 * 109.47139 * 240.00213 * 19 17 15 23 23 N 1.31134 * 106.89458 * 359.77454 * 10 9 8 24 24 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 28 28 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 6 4 3 33 33 H 1.09000 * 109.47486 * 180.02562 * 6 4 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 6 4 3 35 35 H 1.08998 * 109.47314 * 29.98307 * 11 10 9 36 36 H 1.09009 * 109.47201 * 149.97775 * 11 10 9 37 37 H 1.09007 * 109.47140 * 300.00395 * 12 11 10 38 38 H 1.08997 * 109.46940 * 60.00063 * 12 11 10 39 39 H 1.08999 * 109.47482 * 299.99661 * 13 12 11 40 40 H 1.08997 * 109.47086 * 60.00133 * 13 12 11 41 41 H 1.08999 * 109.46747 * 300.00213 * 14 13 12 42 42 H 1.09000 * 109.46690 * 59.99711 * 14 13 12 43 43 H 0.97007 * 119.99434 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 2.2520 1.1963 2.4890 6 6 4.0244 0.1730 1.0560 7 6 3.7889 2.6380 1.1813 8 7 3.6531 3.6044 0.3233 9 8 4.4025 4.5179 0.5977 10 6 5.1086 4.2119 1.6904 11 6 6.1477 5.0750 2.3583 12 6 7.5226 4.7751 1.7579 13 6 8.5776 5.6510 2.4366 14 6 9.9527 5.3507 1.8365 15 6 10.9917 6.2138 2.5045 16 1 10.7005 6.9070 3.2798 17 6 12.3142 6.1179 2.1267 18 7 12.6688 5.2734 1.1829 19 14 13.6023 7.1874 2.9552 20 1 12.9504 8.0456 3.9768 21 1 14.6167 6.3228 3.6100 22 1 14.2638 8.0434 1.9380 23 7 4.7214 3.0188 2.0726 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 2.6213 1.4026 -0.9314 28 1 1.3585 2.1317 0.0896 29 1 1.7071 0.2523 2.4890 30 1 2.9442 1.2158 3.3308 31 1 1.5471 2.0228 2.5786 32 1 4.5822 0.2705 0.1246 33 1 4.7163 0.1927 1.8981 34 1 3.4795 -0.7710 1.0559 35 1 5.9036 6.1255 2.2004 36 1 6.1639 4.8626 3.4274 37 1 7.7668 3.7246 1.9158 38 1 7.5064 4.9876 0.6890 39 1 8.3337 6.7016 2.2790 40 1 8.5937 5.4381 3.5054 41 1 10.1963 4.3001 1.9944 42 1 9.9368 5.5632 0.7675 43 1 13.5992 5.2062 0.9168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590283184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:29 Heat of formation + Delta-G solvation = 46.965121 kcal Electronic energy + Delta-G solvation = -20898.158163 eV Core-core repulsion = 17752.983566 eV Total energy + Delta-G solvation = -3145.174598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -45.53861 -38.52911 -36.10245 -35.15377 -33.49267 -32.71078 -31.70658 -29.40516 -27.61424 -27.09632 -25.69401 -24.59529 -23.07126 -21.83825 -20.52720 -20.17824 -19.12982 -17.97464 -17.22560 -16.22177 -15.81340 -15.40183 -15.12745 -14.65423 -14.48783 -14.24024 -13.92073 -13.33605 -13.01342 -12.92855 -12.46181 -12.24705 -12.09586 -12.06608 -11.96056 -11.74227 -11.66308 -11.43778 -11.11829 -11.06483 -11.05014 -10.88754 -10.65941 -10.57546 -10.51939 -9.89574 -9.71702 -9.64126 -9.30770 -9.03659 -8.35229 -5.99998 -4.02384 1.19664 1.93689 2.25542 2.88978 3.31099 3.38663 3.42479 3.48413 3.94607 4.44599 4.46839 4.56590 4.70165 4.81100 4.88812 5.08730 5.21305 5.24045 5.33823 5.36033 5.41083 5.43937 5.51210 5.55781 5.58106 5.71540 5.74354 5.82680 5.92374 5.96875 6.00132 6.07610 6.10066 6.30516 6.35097 6.43459 6.67954 6.83004 7.10045 7.67861 7.81449 8.00236 8.21261 8.42215 9.05287 9.61808 11.11373 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041798 B = 0.002502 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.729744 B =11186.803959 C =11387.816432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.147 4.147 3 C -0.082 4.082 4 C 0.035 3.965 5 C -0.136 4.136 6 C -0.140 4.140 7 C 0.177 3.823 8 N -0.390 5.390 9 O 0.071 5.929 10 C 0.197 3.803 11 C -0.031 4.031 12 C -0.115 4.115 13 C -0.108 4.108 14 C 0.019 3.981 15 C -0.520 4.520 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.895 5.895 19 Si 0.892 3.108 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.483 5.483 24 H 0.095 0.905 25 H 0.098 0.902 26 H 0.113 0.887 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.054 0.946 32 H 0.058 0.942 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.108 0.892 37 H 0.066 0.934 38 H 0.064 0.936 39 H 0.052 0.948 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.016 0.984 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.182 -8.808 0.023 24.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.165 4.165 3 C -0.120 4.120 4 C 0.034 3.966 5 C -0.194 4.194 6 C -0.198 4.198 7 C -0.096 4.096 8 N -0.098 5.098 9 O 0.015 5.985 10 C -0.023 4.023 11 C -0.070 4.070 12 C -0.154 4.154 13 C -0.146 4.146 14 C -0.018 4.018 15 C -0.558 4.558 16 H 0.074 0.926 17 C -0.146 4.146 18 N -0.535 5.535 19 Si 0.720 3.280 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.210 1.210 23 N -0.216 5.216 24 H 0.113 0.887 25 H 0.116 0.884 26 H 0.131 0.869 27 H 0.097 0.903 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.088 0.912 34 H 0.089 0.911 35 H 0.119 0.881 36 H 0.127 0.873 37 H 0.085 0.915 38 H 0.083 0.917 39 H 0.071 0.929 40 H 0.071 0.929 41 H 0.034 0.966 42 H 0.034 0.966 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -23.603 -9.240 -0.483 25.352 hybrid contribution 0.948 0.681 0.331 1.213 sum -22.656 -8.559 -0.151 24.219 Atomic orbital electron populations 1.23861 0.95886 1.01855 1.01452 1.22896 0.95930 0.98146 0.99521 1.20760 0.97653 0.96018 0.97547 1.18878 0.93596 0.86887 0.97280 1.21849 0.99794 1.02272 0.95457 1.21906 0.98540 0.96354 1.03029 1.25703 0.96296 0.98358 0.89249 1.74590 1.13371 0.98712 1.23160 1.85290 1.38492 1.36153 1.38607 1.29160 0.94890 0.92408 0.85849 1.20524 0.89615 0.96975 0.99847 1.21728 0.91231 1.01855 1.00542 1.21633 0.96023 0.97708 0.99244 1.19107 0.89490 0.97021 0.96148 1.21299 0.92300 1.21879 1.20353 0.92570 1.25046 0.98761 0.95606 0.95199 1.69980 1.17258 1.36383 1.29869 0.86543 0.81660 0.80419 0.79415 1.19721 1.21052 1.21046 1.71854 1.12963 1.10079 1.26672 0.88658 0.88407 0.86946 0.90311 0.90906 0.91102 0.91352 0.92682 0.92337 0.91180 0.91103 0.88142 0.87334 0.91509 0.91697 0.92910 0.92923 0.96577 0.96575 0.93073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.32 14.32 29.02 0.42 -0.91 16 2 C -0.15 -1.10 7.65 -36.02 -0.28 -1.38 16 3 C -0.08 -0.77 4.23 -27.88 -0.12 -0.89 16 4 C 0.04 0.37 0.77 -155.66 -0.12 0.25 16 5 C -0.14 -1.24 8.21 37.16 0.31 -0.94 16 6 C -0.14 -1.34 8.20 37.16 0.30 -1.03 16 7 C 0.18 2.40 6.40 -156.37 -1.00 1.40 16 8 N -0.39 -5.66 11.47 30.90 0.35 -5.31 16 9 O 0.07 1.03 11.31 18.09 0.20 1.23 16 10 C 0.20 2.71 7.77 -13.06 -0.10 2.61 16 11 C -0.03 -0.37 5.84 -27.89 -0.16 -0.54 16 12 C -0.11 -1.79 5.20 -26.73 -0.14 -1.93 16 13 C -0.11 -2.05 5.15 -26.73 -0.14 -2.19 16 14 C 0.02 0.49 4.97 -27.88 -0.14 0.35 16 15 C -0.52 -14.52 9.11 -34.44 -0.31 -14.84 16 16 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 17 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 18 N -0.90 -26.91 13.29 55.43 0.74 -26.18 16 19 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 20 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.40 16 22 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 23 N -0.48 -6.99 11.55 -9.87 -0.11 -7.11 16 24 H 0.10 0.64 7.84 -52.48 -0.41 0.23 16 25 H 0.10 0.54 8.06 -52.49 -0.42 0.12 16 26 H 0.11 0.73 6.80 -52.49 -0.36 0.37 16 27 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.07 0.72 7.79 -51.93 -0.40 0.32 16 29 H 0.07 0.53 7.22 -51.93 -0.37 0.16 16 30 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.07 0.52 6.52 -51.93 -0.34 0.18 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.11 1.21 8.14 -51.92 -0.42 0.79 16 37 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 38 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 39 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.02 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 357.88 15.07 5.39 5.39 Total: -1.00 -31.01 357.88 -7.37 -38.38 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -7.35 Total: -4.36 kcal Atomic # 6 Polarization: -16.98 SS G_CDS: -1.58 Total: -18.56 kcal Atomic # 7 Polarization: -39.57 SS G_CDS: 0.98 Total: -38.59 kcal Atomic # 8 Polarization: 1.03 SS G_CDS: 0.20 Total: 1.23 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -31.01 -7.37 -38.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590283184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.344 kcal (2) G-P(sol) polarization free energy of solvation -31.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds