Wall clock time and date at job start Tue Mar 31 2020 00:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30998 * 1 3 3 C 1.50701 * 119.99872 * 2 1 4 4 C 1.52997 * 109.47212 * 124.99896 * 3 2 1 5 5 C 1.53006 * 109.47127 * 300.00129 * 4 3 2 6 6 C 1.52999 * 109.47317 * 59.99639 * 4 3 2 7 7 C 1.50697 * 109.47466 * 179.97438 * 4 3 2 8 8 N 1.29948 * 126.28418 * 0.03037 * 7 4 3 9 9 O 1.21300 * 110.25087 * 179.97438 * 8 7 4 10 10 C 1.33647 * 109.81284 * 359.97438 * 9 8 7 11 11 C 1.50693 * 126.55310 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.47670 * 269.97969 * 11 10 9 13 13 C 1.52996 * 109.47304 * 180.02562 * 12 11 10 14 14 C 1.53011 * 109.47124 * 179.97438 * 13 12 11 15 15 C 1.50693 * 109.46962 * 179.97438 * 14 13 12 16 16 H 1.07998 * 120.00245 * 0.02562 * 15 14 13 17 17 C 1.37885 * 119.99960 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99395 * 0.02562 * 17 15 14 19 19 Si 1.86796 * 120.00100 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47083 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47107 * 120.00247 * 19 17 15 22 22 H 1.48501 * 109.47139 * 240.00213 * 19 17 15 23 23 N 1.31134 * 106.89458 * 359.77454 * 10 9 8 24 24 H 1.08005 * 120.00182 * 0.02562 * 1 2 3 25 25 H 1.08002 * 120.00350 * 180.02562 * 1 2 3 26 26 H 1.07995 * 120.00180 * 179.97438 * 2 1 3 27 27 H 1.09002 * 109.47060 * 244.99951 * 3 2 1 28 28 H 1.09001 * 109.47380 * 5.00038 * 3 2 1 29 29 H 1.08993 * 109.46955 * 60.00011 * 5 4 3 30 30 H 1.09000 * 109.47050 * 179.97438 * 5 4 3 31 31 H 1.09001 * 109.47002 * 299.99574 * 5 4 3 32 32 H 1.09002 * 109.46716 * 60.00091 * 6 4 3 33 33 H 1.09000 * 109.47486 * 180.02562 * 6 4 3 34 34 H 1.09001 * 109.47362 * 300.00732 * 6 4 3 35 35 H 1.08998 * 109.47314 * 29.98307 * 11 10 9 36 36 H 1.09009 * 109.47201 * 149.97775 * 11 10 9 37 37 H 1.09007 * 109.47140 * 300.00395 * 12 11 10 38 38 H 1.08997 * 109.46940 * 60.00063 * 12 11 10 39 39 H 1.08999 * 109.47482 * 299.99661 * 13 12 11 40 40 H 1.08997 * 109.47086 * 60.00133 * 13 12 11 41 41 H 1.08999 * 109.46747 * 300.00213 * 14 13 12 42 42 H 1.09000 * 109.46690 * 59.99711 * 14 13 12 43 43 H 0.97007 * 119.99434 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3332 1.1816 5 6 2.2520 1.1963 2.4890 6 6 4.0244 0.1730 1.0560 7 6 3.7889 2.6380 1.1813 8 7 3.6531 3.6044 0.3233 9 8 4.4025 4.5179 0.5977 10 6 5.1086 4.2119 1.6904 11 6 6.1477 5.0750 2.3583 12 6 7.5226 4.7751 1.7579 13 6 8.5776 5.6510 2.4366 14 6 9.9527 5.3507 1.8365 15 6 10.9917 6.2138 2.5045 16 1 10.7005 6.9070 3.2798 17 6 12.3142 6.1179 2.1267 18 7 12.6688 5.2734 1.1829 19 14 13.6023 7.1874 2.9552 20 1 12.9504 8.0456 3.9768 21 1 14.6167 6.3228 3.6100 22 1 14.2638 8.0434 1.9380 23 7 4.7214 3.0188 2.0726 24 1 -0.5401 0.9353 -0.0004 25 1 -0.5401 -0.9353 0.0004 26 1 1.8500 -0.9353 0.0004 27 1 2.6213 1.4026 -0.9314 28 1 1.3585 2.1317 0.0896 29 1 1.7071 0.2523 2.4890 30 1 2.9442 1.2158 3.3308 31 1 1.5471 2.0228 2.5786 32 1 4.5822 0.2705 0.1246 33 1 4.7163 0.1927 1.8981 34 1 3.4795 -0.7710 1.0559 35 1 5.9036 6.1255 2.2004 36 1 6.1639 4.8626 3.4274 37 1 7.7668 3.7246 1.9158 38 1 7.5064 4.9876 0.6890 39 1 8.3337 6.7016 2.2790 40 1 8.5937 5.4381 3.5054 41 1 10.1963 4.3001 1.9944 42 1 9.9368 5.5632 0.7675 43 1 13.5992 5.2062 0.9168 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590283184.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:27:28 Heat of formation + Delta-G solvation = 29.383963 kcal Electronic energy + Delta-G solvation = -20898.920539 eV Core-core repulsion = 17752.983566 eV Total energy + Delta-G solvation = -3145.936974 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -46.62137 -39.33360 -37.39670 -36.30399 -35.06595 -33.82807 -32.98480 -30.94847 -28.35611 -27.95737 -27.28785 -25.59114 -24.59837 -23.07805 -21.80360 -21.30177 -19.88320 -19.09482 -18.40746 -18.24876 -16.67141 -16.46327 -16.37879 -16.13400 -15.58724 -15.21040 -14.68637 -14.64012 -14.31547 -13.97127 -13.70133 -13.62005 -13.43744 -13.18569 -12.85694 -12.84213 -12.70649 -12.62290 -12.36915 -12.35011 -12.17313 -12.15725 -12.00540 -11.80830 -11.73758 -11.36495 -11.34795 -11.16147 -10.76724 -10.53403 -10.22242 -8.17736 -6.28389 0.11161 1.19315 1.38258 1.42126 1.42380 1.55704 1.83396 2.43115 2.55193 2.97264 3.15904 3.63874 3.78667 3.90689 4.03838 4.06753 4.12627 4.16499 4.30087 4.46507 4.64455 4.65616 4.66719 4.72514 4.76068 4.80405 4.83520 4.87100 4.90270 4.95549 5.04198 5.11198 5.17064 5.23464 5.26436 5.32248 5.33725 5.58685 5.74398 5.81272 5.88166 5.91034 6.28078 6.90658 7.13770 7.41120 8.94408 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.041798 B = 0.002502 C = 0.002458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 669.729744 B =11186.803959 C =11387.816432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.156 4.156 3 C -0.075 4.075 4 C 0.031 3.969 5 C -0.129 4.129 6 C -0.137 4.137 7 C 0.175 3.825 8 N -0.406 5.406 9 O 0.063 5.937 10 C 0.197 3.803 11 C -0.020 4.020 12 C -0.105 4.105 13 C -0.095 4.095 14 C 0.018 3.982 15 C -0.539 4.539 16 H 0.066 0.934 17 C -0.006 4.006 18 N -0.937 5.937 19 Si 0.965 3.035 20 H -0.258 1.258 21 H -0.281 1.281 22 H -0.280 1.280 23 N -0.499 5.499 24 H 0.093 0.907 25 H 0.115 0.885 26 H 0.126 0.874 27 H 0.065 0.935 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.059 0.941 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.058 0.942 34 H 0.097 0.903 35 H 0.128 0.872 36 H 0.125 0.875 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.066 0.934 40 H 0.062 0.938 41 H -0.013 1.013 42 H -0.011 1.011 43 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.373 -8.626 1.251 25.885 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.174 4.174 3 C -0.113 4.113 4 C 0.030 3.970 5 C -0.187 4.187 6 C -0.195 4.195 7 C -0.099 4.099 8 N -0.117 5.117 9 O 0.008 5.992 10 C -0.023 4.023 11 C -0.058 4.058 12 C -0.143 4.143 13 C -0.133 4.133 14 C -0.019 4.019 15 C -0.577 4.577 16 H 0.084 0.916 17 C -0.204 4.204 18 N -0.578 5.578 19 Si 0.790 3.210 20 H -0.182 1.182 21 H -0.207 1.207 22 H -0.206 1.206 23 N -0.232 5.232 24 H 0.111 0.889 25 H 0.133 0.867 26 H 0.144 0.856 27 H 0.083 0.917 28 H 0.082 0.918 29 H 0.110 0.890 30 H 0.078 0.922 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.077 0.923 34 H 0.116 0.884 35 H 0.146 0.854 36 H 0.143 0.857 37 H 0.071 0.929 38 H 0.077 0.923 39 H 0.085 0.915 40 H 0.081 0.919 41 H 0.005 0.995 42 H 0.007 0.993 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -24.806 -9.041 0.753 26.413 hybrid contribution 1.291 0.589 -0.090 1.422 sum -23.515 -8.452 0.663 24.996 Atomic orbital electron populations 1.24032 0.95704 1.02625 0.99905 1.22860 0.96147 0.97515 1.00854 1.20665 0.97193 0.97029 0.96423 1.19116 0.93845 0.85645 0.98433 1.21806 0.99412 1.03219 0.94260 1.21896 0.98355 0.97299 1.01904 1.26341 0.95900 0.99124 0.88489 1.74586 1.14060 0.99170 1.23837 1.85267 1.38740 1.36328 1.38855 1.29410 0.94921 0.92398 0.85590 1.20481 0.86881 0.98286 1.00163 1.21495 0.92470 1.00270 1.00101 1.21418 0.93221 0.99134 0.99509 1.19063 0.93036 0.94932 0.94864 1.21798 0.93217 1.22137 1.20506 0.91617 1.26038 1.01423 0.97039 0.95854 1.70121 1.17885 1.38215 1.31534 0.85391 0.78528 0.78551 0.78531 1.18179 1.20659 1.20614 1.71872 1.13522 1.10485 1.27353 0.88865 0.86689 0.85610 0.91688 0.91810 0.89000 0.92165 0.93110 0.93397 0.92321 0.88417 0.85385 0.85671 0.92912 0.92344 0.91495 0.91907 0.99472 0.99257 0.92937 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.14 14.32 67.78 0.97 -1.17 16 2 C -0.16 -2.05 7.65 25.65 0.20 -1.86 16 3 C -0.08 -1.37 4.23 29.85 0.13 -1.24 16 4 C 0.03 0.63 0.77 -52.93 -0.04 0.59 16 5 C -0.13 -2.20 8.21 71.98 0.59 -1.61 16 6 C -0.14 -2.50 8.20 71.98 0.59 -1.91 16 7 C 0.17 4.71 6.40 138.46 0.89 5.59 16 8 N -0.41 -11.83 11.47 -60.30 -0.69 -12.52 16 9 O 0.06 1.79 11.31 74.80 0.85 2.64 16 10 C 0.20 5.26 7.77 88.38 0.69 5.95 16 11 C -0.02 -0.44 5.84 29.85 0.17 -0.27 16 12 C -0.10 -3.20 5.20 30.59 0.16 -3.04 16 13 C -0.10 -3.53 5.15 30.60 0.16 -3.37 16 14 C 0.02 0.94 4.97 29.85 0.15 1.09 16 15 C -0.54 -30.16 9.11 25.60 0.23 -29.93 16 16 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 17 C -0.01 -0.37 5.46 84.66 0.46 0.10 16 18 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 19 Si 0.97 44.03 29.54 68.60 2.03 46.06 16 20 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 21 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 N -0.50 -14.25 11.55 -303.19 -3.50 -17.76 16 24 H 0.09 1.11 7.84 -2.91 -0.02 1.08 16 25 H 0.11 0.94 8.06 -2.91 -0.02 0.92 16 26 H 0.13 1.31 6.80 -2.91 -0.02 1.29 16 27 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.25 7.79 -2.39 -0.02 1.23 16 29 H 0.09 1.16 7.22 -2.39 -0.02 1.15 16 30 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 33 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.10 1.23 6.52 -2.39 -0.02 1.21 16 35 H 0.13 2.23 8.14 -2.39 -0.02 2.21 16 36 H 0.13 2.47 8.14 -2.38 -0.02 2.46 16 37 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 38 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 41 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 42 H -0.01 -0.62 8.14 -2.39 -0.02 -0.64 16 43 H 0.26 15.07 8.31 -92.70 -0.77 14.30 16 Total: -1.00 -67.76 357.88 5.26 -62.50 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 0.96 Total: 7.33 kcal Atomic # 6 Polarization: -36.41 SS G_CDS: 5.34 Total: -31.07 kcal Atomic # 7 Polarization: -83.55 SS G_CDS: -3.91 Total: -87.46 kcal Atomic # 8 Polarization: 1.79 SS G_CDS: 0.85 Total: 2.64 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -67.76 5.26 -62.50 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590283184.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.880 kcal (2) G-P(sol) polarization free energy of solvation -67.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.496 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.384 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds