Wall clock time and date at job start Tue Mar 31 2020 00:14:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50697 * 109.47353 * 2 1 4 4 N 1.30176 * 126.80381 * 269.69147 * 3 2 1 5 5 O 1.20921 * 111.60545 * 180.26170 * 4 3 2 6 6 C 1.34046 * 111.56751 * 359.97438 * 5 4 3 7 7 C 1.50693 * 126.77888 * 179.97438 * 6 5 4 8 8 C 1.35454 * 106.44246 * 359.97438 * 6 5 4 9 9 C 1.50700 * 128.00471 * 180.02562 * 8 6 5 10 10 N 1.46898 * 109.47276 * 269.96412 * 9 8 6 11 11 C 1.46844 * 111.00480 * 66.04623 * 10 9 8 12 12 C 1.53037 * 109.52690 * 174.16230 * 11 10 9 13 13 C 1.53113 * 109.27714 * 59.17823 * 12 11 10 14 14 C 1.53124 * 109.16326 * 302.34537 * 13 12 11 15 15 H 1.09002 * 109.50260 * 297.67516 * 14 13 12 16 16 C 1.50693 * 109.50576 * 177.59779 * 14 13 12 17 17 H 1.07996 * 120.00326 * 245.43596 * 16 14 13 18 18 C 1.37885 * 120.00286 * 65.43468 * 16 14 13 19 19 N 1.31515 * 119.99629 * 9.56449 * 18 16 14 20 20 Si 1.86796 * 120.00191 * 189.56773 * 18 16 14 21 21 H 1.48499 * 109.47456 * 94.99065 * 20 18 16 22 22 H 1.48504 * 109.47247 * 214.99246 * 20 18 16 23 23 H 1.48507 * 109.47119 * 334.98871 * 20 18 16 24 24 C 1.46845 * 110.99868 * 301.83074 * 10 9 8 25 25 H 1.08999 * 109.47300 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46471 * 299.99666 * 1 2 3 27 27 H 1.08998 * 109.47137 * 59.99202 * 1 2 3 28 28 H 1.09000 * 109.46471 * 240.00334 * 2 1 3 29 29 H 1.08998 * 109.47137 * 120.00798 * 2 1 3 30 30 H 1.09005 * 109.47197 * 270.02240 * 7 6 5 31 31 H 1.08999 * 109.47262 * 30.02421 * 7 6 5 32 32 H 1.08999 * 109.47731 * 150.02412 * 7 6 5 33 33 H 1.09005 * 109.47074 * 29.95785 * 9 8 6 34 34 H 1.08996 * 109.47165 * 149.96340 * 9 8 6 35 35 H 1.09001 * 109.46009 * 294.17648 * 11 10 9 36 36 H 1.09001 * 109.46464 * 54.14260 * 11 10 9 37 37 H 1.08999 * 109.50196 * 179.11605 * 12 11 10 38 38 H 1.08995 * 109.50013 * 299.23816 * 12 11 10 39 39 H 1.09004 * 109.52861 * 62.25164 * 13 12 11 40 40 H 1.09005 * 109.52609 * 182.44032 * 13 12 11 41 41 H 0.96996 * 119.99520 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.46948 * 305.86007 * 24 10 9 43 43 H 1.09002 * 109.46114 * 65.82690 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2978 2.1541 -1.0423 5 8 2.6900 3.2531 -0.7253 6 6 2.7362 3.3945 0.6069 7 6 3.1724 4.6187 1.3697 8 6 2.3135 2.2197 1.1321 9 6 2.1754 1.8496 2.5864 10 7 3.4342 1.2615 3.0636 11 6 4.5152 2.2554 3.0572 12 6 5.7689 1.6516 3.6942 13 6 6.1884 0.4086 2.9047 14 6 5.0279 -0.5902 2.8858 15 1 4.8023 -0.9053 3.9046 16 6 5.4115 -1.7916 2.0609 17 1 4.8880 -2.0042 1.1405 18 6 6.4309 -2.6195 2.4811 19 7 6.9414 -2.4751 3.6845 20 14 7.0868 -3.9461 1.3413 21 1 8.2786 -3.4332 0.6189 22 1 7.4668 -5.1401 2.1383 23 1 6.0362 -4.3197 0.3604 24 6 3.7957 0.0786 2.2723 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.2451 4.5674 1.5565 31 1 2.9477 5.5106 0.7847 32 1 2.6400 4.6638 2.3198 33 1 1.9480 2.7426 3.1686 34 1 1.3692 1.1253 2.7020 35 1 4.7342 2.5470 2.0300 36 1 4.2055 3.1325 3.6255 37 1 6.5756 2.3843 3.6750 38 1 5.5544 1.3724 4.7257 39 1 6.4403 0.6936 1.8832 40 1 7.0556 -0.0496 3.3803 41 1 7.6582 -3.0578 3.9803 42 1 2.9635 -0.6254 2.2704 43 1 4.0181 0.3804 1.2488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:30 Heat of formation + Delta-G solvation = 41.842879 kcal Electronic energy + Delta-G solvation = -23166.690994 eV Core-core repulsion = 20021.294279 eV Total energy + Delta-G solvation = -3145.396715 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -44.74948 -38.61468 -35.52429 -34.27873 -32.88435 -31.69525 -31.06096 -29.88459 -28.02899 -26.24786 -24.93152 -24.15037 -22.77843 -21.43583 -20.72314 -19.73665 -18.53194 -17.46725 -16.87895 -16.32781 -15.11643 -14.77400 -14.68343 -14.29220 -14.23025 -13.85566 -13.49859 -13.23847 -13.15507 -12.81701 -12.56257 -12.39318 -12.32283 -12.03661 -11.84822 -11.48636 -11.43150 -11.21818 -10.95291 -10.76222 -10.61842 -10.50539 -10.15293 -9.92427 -9.76463 -9.43067 -9.13375 -8.90454 -8.75156 -8.30327 -7.79133 -6.01025 -4.02254 1.61825 2.39706 3.25896 3.30684 3.38215 3.41104 4.31680 4.40619 4.53832 4.64516 4.92529 5.07142 5.18029 5.31068 5.32166 5.34773 5.38596 5.54099 5.56853 5.63991 5.72867 5.81085 5.87301 5.94082 5.96741 6.03795 6.12180 6.17821 6.24116 6.35002 6.39614 6.50010 6.64666 6.70096 6.92770 7.16027 7.28837 7.58057 7.71394 7.75267 7.99934 8.09964 8.46958 8.47553 9.01877 9.60820 11.08174 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.006145 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.430696 B = 4555.648481 C = 5373.711577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.059 4.059 3 C 0.041 3.959 4 N -0.372 5.372 5 O 0.090 5.910 6 C -0.035 4.035 7 C -0.073 4.073 8 C -0.221 4.221 9 C 0.128 3.872 10 N -0.524 5.524 11 C 0.060 3.940 12 C -0.118 4.118 13 C -0.106 4.106 14 C 0.053 3.947 15 H 0.041 0.959 16 C -0.516 4.516 17 H 0.052 0.948 18 C 0.067 3.933 19 N -0.885 5.885 20 Si 0.884 3.116 21 H -0.282 1.282 22 H -0.287 1.287 23 H -0.274 1.274 24 C 0.068 3.932 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.099 0.901 30 H 0.088 0.912 31 H 0.079 0.921 32 H 0.090 0.910 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.058 0.942 37 H 0.046 0.954 38 H 0.063 0.937 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.022 0.978 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.658 12.075 -2.176 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.096 4.096 3 C -0.118 4.118 4 N -0.077 5.077 5 O 0.026 5.974 6 C -0.099 4.099 7 C -0.130 4.130 8 C -0.227 4.227 9 C -0.001 4.001 10 N -0.246 5.246 11 C -0.068 4.068 12 C -0.156 4.156 13 C -0.144 4.144 14 C 0.034 3.966 15 H 0.060 0.940 16 C -0.555 4.555 17 H 0.071 0.929 18 C -0.135 4.135 19 N -0.524 5.524 20 Si 0.712 3.288 21 H -0.208 1.208 22 H -0.213 1.213 23 H -0.199 1.199 24 C -0.059 4.059 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.098 0.902 29 H 0.117 0.883 30 H 0.106 0.894 31 H 0.098 0.902 32 H 0.108 0.892 33 H 0.097 0.903 34 H 0.102 0.898 35 H 0.044 0.956 36 H 0.077 0.923 37 H 0.065 0.935 38 H 0.081 0.919 39 H 0.049 0.951 40 H 0.091 0.909 41 H 0.069 0.931 42 H 0.079 0.921 43 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -9.645 11.644 -2.874 15.390 hybrid contribution 0.666 -0.561 -0.828 1.201 sum -8.979 11.083 -3.701 14.736 Atomic orbital electron populations 1.21693 0.94234 1.02164 1.01887 1.20192 0.96056 0.88421 1.04977 1.23415 1.01131 0.98942 0.88338 1.73785 1.17014 0.92843 1.24103 1.84762 1.62975 1.27073 1.22618 1.24210 1.02979 0.98853 0.83887 1.20378 1.02699 0.91490 0.98422 1.21974 1.07550 0.93437 0.99747 1.20654 0.94582 0.99694 0.85132 1.62436 1.02097 1.07190 1.52906 1.22122 0.92348 0.93906 0.98416 1.21669 0.94836 0.98466 1.00623 1.21594 1.01893 0.93809 0.97085 1.18685 0.88443 0.92019 0.97414 0.94047 1.21097 1.17698 1.09283 1.07426 0.92936 1.24908 0.96904 0.97020 0.94679 1.69973 1.26607 1.39261 1.16518 0.86711 0.79431 0.81542 0.81128 1.20801 1.21253 1.19910 1.22420 0.99840 0.89571 0.94071 0.91640 0.92438 0.92913 0.90215 0.88256 0.89387 0.90239 0.89186 0.90265 0.89789 0.95558 0.92309 0.93508 0.91857 0.95111 0.90893 0.93072 0.92078 0.95982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 9.90 37.16 0.37 -1.30 16 2 C -0.06 -0.86 6.20 -27.88 -0.17 -1.03 16 3 C 0.04 0.67 5.56 -82.10 -0.46 0.21 16 4 N -0.37 -6.39 12.07 33.42 0.40 -5.99 16 5 O 0.09 1.41 11.20 17.16 0.19 1.61 16 6 C -0.03 -0.48 6.65 -35.31 -0.23 -0.71 16 7 C -0.07 -0.68 9.31 36.00 0.34 -0.34 16 8 C -0.22 -3.28 4.09 -104.42 -0.43 -3.71 16 9 C 0.13 1.81 5.70 -4.98 -0.03 1.78 16 10 N -0.52 -9.11 4.86 -236.12 -1.15 -10.26 16 11 C 0.06 0.98 4.19 -3.84 -0.02 0.97 16 12 C -0.12 -2.21 6.09 -26.65 -0.16 -2.37 16 13 C -0.11 -2.45 5.09 -26.61 -0.14 -2.59 16 14 C 0.05 1.31 2.13 -91.69 -0.20 1.11 16 15 H 0.04 1.14 8.09 -51.93 -0.42 0.72 16 16 C -0.52 -14.10 8.48 -34.44 -0.29 -14.39 16 17 H 0.05 1.43 7.77 -52.49 -0.41 1.02 16 18 C 0.07 1.85 5.22 -17.82 -0.09 1.76 16 19 N -0.89 -25.36 12.18 55.43 0.68 -24.69 16 20 Si 0.88 21.38 29.55 -169.99 -5.02 16.36 16 21 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 24 C 0.07 1.39 3.18 -3.83 -0.01 1.38 16 25 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 26 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 29 H 0.10 1.54 5.17 -51.93 -0.27 1.27 16 30 H 0.09 0.82 7.23 -51.93 -0.38 0.44 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.09 0.70 7.44 -51.93 -0.39 0.32 16 33 H 0.08 0.93 7.37 -51.93 -0.38 0.55 16 34 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.03 0.45 5.86 -51.93 -0.30 0.14 16 36 H 0.06 0.80 8.04 -51.93 -0.42 0.38 16 37 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.07 1.89 6.98 -51.93 -0.36 1.52 16 41 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 42 H 0.06 1.24 6.26 -51.93 -0.32 0.92 16 43 H 0.02 0.48 6.46 -51.93 -0.34 0.15 16 LS Contribution 331.20 15.07 4.99 4.99 Total: -1.00 -29.93 331.20 -8.36 -38.28 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -6.92 Total: -1.07 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: -1.52 Total: -19.24 kcal Atomic # 7 Polarization: -40.86 SS G_CDS: -0.07 Total: -40.93 kcal Atomic # 8 Polarization: 1.41 SS G_CDS: 0.19 Total: 1.61 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -29.93 -8.36 -38.28 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.127 kcal (2) G-P(sol) polarization free energy of solvation -29.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds