Wall clock time and date at job start Tue Mar 31 2020 00:14:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50697 * 109.47353 * 2 1 4 4 N 1.30176 * 126.80381 * 269.69147 * 3 2 1 5 5 O 1.20921 * 111.60545 * 180.26170 * 4 3 2 6 6 C 1.34046 * 111.56751 * 359.97438 * 5 4 3 7 7 C 1.50693 * 126.77888 * 179.97438 * 6 5 4 8 8 C 1.35454 * 106.44246 * 359.97438 * 6 5 4 9 9 C 1.50700 * 128.00471 * 180.02562 * 8 6 5 10 10 N 1.46898 * 109.47276 * 269.96412 * 9 8 6 11 11 C 1.46844 * 111.00480 * 66.04623 * 10 9 8 12 12 C 1.53037 * 109.52690 * 174.16230 * 11 10 9 13 13 C 1.53113 * 109.27714 * 59.17823 * 12 11 10 14 14 C 1.53124 * 109.16326 * 302.34537 * 13 12 11 15 15 H 1.09002 * 109.50260 * 297.67516 * 14 13 12 16 16 C 1.50693 * 109.50576 * 177.59779 * 14 13 12 17 17 H 1.07996 * 120.00326 * 245.43596 * 16 14 13 18 18 C 1.37885 * 120.00286 * 65.43468 * 16 14 13 19 19 N 1.31515 * 119.99629 * 9.56449 * 18 16 14 20 20 Si 1.86796 * 120.00191 * 189.56773 * 18 16 14 21 21 H 1.48499 * 109.47456 * 94.99065 * 20 18 16 22 22 H 1.48504 * 109.47247 * 214.99246 * 20 18 16 23 23 H 1.48507 * 109.47119 * 334.98871 * 20 18 16 24 24 C 1.46845 * 110.99868 * 301.83074 * 10 9 8 25 25 H 1.08999 * 109.47300 * 179.97438 * 1 2 3 26 26 H 1.09000 * 109.46471 * 299.99666 * 1 2 3 27 27 H 1.08998 * 109.47137 * 59.99202 * 1 2 3 28 28 H 1.09000 * 109.46471 * 240.00334 * 2 1 3 29 29 H 1.08998 * 109.47137 * 120.00798 * 2 1 3 30 30 H 1.09005 * 109.47197 * 270.02240 * 7 6 5 31 31 H 1.08999 * 109.47262 * 30.02421 * 7 6 5 32 32 H 1.08999 * 109.47731 * 150.02412 * 7 6 5 33 33 H 1.09005 * 109.47074 * 29.95785 * 9 8 6 34 34 H 1.08996 * 109.47165 * 149.96340 * 9 8 6 35 35 H 1.09001 * 109.46009 * 294.17648 * 11 10 9 36 36 H 1.09001 * 109.46464 * 54.14260 * 11 10 9 37 37 H 1.08999 * 109.50196 * 179.11605 * 12 11 10 38 38 H 1.08995 * 109.50013 * 299.23816 * 12 11 10 39 39 H 1.09004 * 109.52861 * 62.25164 * 13 12 11 40 40 H 1.09005 * 109.52609 * 182.44032 * 13 12 11 41 41 H 0.96996 * 119.99520 * 179.97438 * 19 18 16 42 42 H 1.08999 * 109.46948 * 305.86007 * 24 10 9 43 43 H 1.09002 * 109.46114 * 65.82690 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4208 0.0000 4 7 2.2978 2.1541 -1.0423 5 8 2.6900 3.2531 -0.7253 6 6 2.7362 3.3945 0.6069 7 6 3.1724 4.6187 1.3697 8 6 2.3135 2.2197 1.1321 9 6 2.1754 1.8496 2.5864 10 7 3.4342 1.2615 3.0636 11 6 4.5152 2.2554 3.0572 12 6 5.7689 1.6516 3.6942 13 6 6.1884 0.4086 2.9047 14 6 5.0279 -0.5902 2.8858 15 1 4.8023 -0.9053 3.9046 16 6 5.4115 -1.7916 2.0609 17 1 4.8880 -2.0042 1.1405 18 6 6.4309 -2.6195 2.4811 19 7 6.9414 -2.4751 3.6845 20 14 7.0868 -3.9461 1.3413 21 1 8.2786 -3.4332 0.6189 22 1 7.4668 -5.1401 2.1383 23 1 6.0362 -4.3197 0.3604 24 6 3.7957 0.0786 2.2723 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 4.2451 4.5674 1.5565 31 1 2.9477 5.5106 0.7847 32 1 2.6400 4.6638 2.3198 33 1 1.9480 2.7426 3.1686 34 1 1.3692 1.1253 2.7020 35 1 4.7342 2.5470 2.0300 36 1 4.2055 3.1325 3.6255 37 1 6.5756 2.3843 3.6750 38 1 5.5544 1.3724 4.7257 39 1 6.4403 0.6936 1.8832 40 1 7.0556 -0.0496 3.3803 41 1 7.6582 -3.0578 3.9803 42 1 2.9635 -0.6254 2.2704 43 1 4.0181 0.3804 1.2488 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595617423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:29 Heat of formation + Delta-G solvation = 23.684796 kcal Electronic energy + Delta-G solvation = -23167.478387 eV Core-core repulsion = 20021.294279 eV Total energy + Delta-G solvation = -3146.184108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -45.91831 -40.07575 -36.85138 -35.67978 -34.44388 -33.13750 -32.22179 -31.64927 -29.06481 -27.52588 -26.83113 -25.25020 -24.22568 -23.07633 -22.10481 -20.84660 -20.15189 -18.70960 -18.42449 -17.96471 -16.80232 -16.21447 -15.91012 -15.76765 -15.44268 -15.19197 -14.79995 -14.55520 -14.33398 -14.04042 -13.97605 -13.89406 -13.48103 -13.35654 -13.07687 -12.88422 -12.86485 -12.60448 -12.50225 -12.48845 -12.14235 -11.96314 -11.70125 -11.58090 -11.42459 -10.96719 -10.72184 -10.64317 -10.42441 -10.10952 -9.20090 -8.14587 -6.22225 0.53457 1.22996 1.35957 1.38128 1.47456 2.26114 2.40079 3.15266 3.15837 3.25426 3.54118 3.88112 4.02411 4.15329 4.22648 4.29150 4.32108 4.38283 4.41990 4.58586 4.64452 4.65082 4.70523 4.77649 4.85255 4.87809 4.90707 4.97163 4.98879 5.02911 5.08374 5.11685 5.17134 5.26081 5.33560 5.41908 5.45576 5.61977 5.94066 6.04388 6.15127 6.33916 6.45793 6.90537 7.34701 7.43965 8.94111 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017458 B = 0.006145 C = 0.005209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1603.430696 B = 4555.648481 C = 5373.711577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.060 4.060 3 C 0.028 3.972 4 N -0.403 5.403 5 O 0.080 5.920 6 C -0.022 4.022 7 C -0.075 4.075 8 C -0.239 4.239 9 C 0.133 3.867 10 N -0.531 5.531 11 C 0.065 3.935 12 C -0.112 4.112 13 C -0.099 4.099 14 C 0.051 3.949 15 H 0.005 0.995 16 C -0.536 4.536 17 H 0.045 0.955 18 C 0.021 3.979 19 N -0.913 5.913 20 Si 0.943 3.057 21 H -0.279 1.279 22 H -0.280 1.280 23 H -0.270 1.270 24 C 0.091 3.909 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.050 0.950 28 H 0.067 0.933 29 H 0.087 0.913 30 H 0.094 0.906 31 H 0.101 0.899 32 H 0.114 0.886 33 H 0.115 0.885 34 H 0.087 0.913 35 H 0.023 0.977 36 H 0.103 0.897 37 H 0.072 0.928 38 H 0.056 0.944 39 H 0.018 0.982 40 H 0.037 0.963 41 H 0.261 0.739 42 H 0.057 0.943 43 H 0.006 0.994 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.576 14.045 -1.835 17.677 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.098 4.098 3 C -0.131 4.131 4 N -0.111 5.111 5 O 0.017 5.983 6 C -0.087 4.087 7 C -0.132 4.132 8 C -0.245 4.245 9 C 0.005 3.995 10 N -0.253 5.253 11 C -0.063 4.063 12 C -0.150 4.150 13 C -0.138 4.138 14 C 0.032 3.968 15 H 0.024 0.976 16 C -0.574 4.574 17 H 0.063 0.937 18 C -0.179 4.179 19 N -0.552 5.552 20 Si 0.768 3.232 21 H -0.205 1.205 22 H -0.206 1.206 23 H -0.194 1.194 24 C -0.037 4.037 25 H 0.098 0.902 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.085 0.915 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.119 0.881 32 H 0.132 0.868 33 H 0.133 0.867 34 H 0.105 0.895 35 H 0.041 0.959 36 H 0.121 0.879 37 H 0.090 0.910 38 H 0.074 0.926 39 H 0.037 0.963 40 H 0.056 0.944 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.024 0.976 Dipole moment (debyes) X Y Z Total from point charges -10.572 13.631 -2.535 17.436 hybrid contribution 0.960 -1.147 -0.922 1.757 sum -9.612 12.484 -3.457 16.131 Atomic orbital electron populations 1.21640 0.91931 1.03263 1.02234 1.20200 0.98064 0.87845 1.03680 1.23746 1.00979 0.99421 0.88990 1.73774 1.18618 0.93662 1.25055 1.84721 1.62973 1.26612 1.23945 1.25015 1.00710 0.99856 0.83071 1.20669 1.03183 0.90193 0.99140 1.22054 1.08904 0.93836 0.99668 1.20749 0.92645 1.01056 0.85095 1.62357 1.03738 1.06852 1.52396 1.22160 0.90871 0.94593 0.98664 1.21601 0.97141 0.96858 0.99414 1.21415 1.00033 0.95607 0.96720 1.18601 0.90914 0.92141 0.95098 0.97648 1.21465 1.17887 1.10595 1.07479 0.93670 1.25617 0.97147 0.99195 0.95918 1.70082 1.27027 1.40248 1.17869 0.85785 0.78781 0.79193 0.79399 1.20488 1.20555 1.19408 1.21956 0.97713 0.90952 0.93056 0.90190 0.91503 0.93037 0.91461 0.89478 0.88754 0.88067 0.86795 0.86664 0.89475 0.95860 0.87858 0.90988 0.92567 0.96341 0.94382 0.93011 0.92449 0.97614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.90 71.99 0.71 -2.29 16 2 C -0.06 -1.77 6.20 29.85 0.19 -1.59 16 3 C 0.03 0.88 5.56 43.58 0.24 1.12 16 4 N -0.40 -13.78 12.07 -49.56 -0.60 -14.38 16 5 O 0.08 2.41 11.20 71.58 0.80 3.21 16 6 C -0.02 -0.54 6.65 25.04 0.17 -0.38 16 7 C -0.07 -1.06 9.31 71.23 0.66 -0.39 16 8 C -0.24 -6.60 4.09 -19.74 -0.08 -6.68 16 9 C 0.13 3.34 5.70 85.56 0.49 3.83 16 10 N -0.53 -17.44 4.86 -900.94 -4.38 -21.82 16 11 C 0.06 1.91 4.19 86.33 0.36 2.27 16 12 C -0.11 -4.04 6.09 30.64 0.19 -3.85 16 13 C -0.10 -4.71 5.09 30.67 0.16 -4.56 16 14 C 0.05 2.61 2.13 -11.49 -0.02 2.58 16 15 H 0.01 0.31 8.09 -2.39 -0.02 0.29 16 16 C -0.54 -30.21 8.48 25.60 0.22 -29.99 16 17 H 0.05 2.54 7.77 -2.91 -0.02 2.52 16 18 C 0.02 1.17 5.22 84.66 0.44 1.61 16 19 N -0.91 -53.81 12.18 21.45 0.26 -53.55 16 20 Si 0.94 44.63 29.55 68.60 2.03 46.66 16 21 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 22 H -0.28 -12.89 7.11 99.48 0.71 -12.19 16 23 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 24 C 0.09 3.77 3.18 86.33 0.27 4.04 16 25 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 29 H 0.09 2.76 5.17 -2.39 -0.01 2.75 16 30 H 0.09 1.31 7.23 -2.38 -0.02 1.29 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.11 1.11 7.44 -2.39 -0.02 1.09 16 33 H 0.12 2.11 7.37 -2.38 -0.02 2.09 16 34 H 0.09 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.02 0.72 5.86 -2.39 -0.01 0.71 16 36 H 0.10 2.22 8.04 -2.39 -0.02 2.20 16 37 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 38 H 0.06 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.86 16 40 H 0.04 2.03 6.98 -2.38 -0.02 2.01 16 41 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 42 H 0.06 2.39 6.26 -2.39 -0.01 2.37 16 43 H 0.01 0.25 6.46 -2.39 -0.02 0.24 16 Total: -1.00 -67.70 331.20 3.09 -64.60 By element: Atomic # 1 Polarization: 8.57 SS G_CDS: 0.99 Total: 9.55 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 3.99 Total: -34.28 kcal Atomic # 7 Polarization: -85.03 SS G_CDS: -4.71 Total: -89.75 kcal Atomic # 8 Polarization: 2.41 SS G_CDS: 0.80 Total: 3.21 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -67.70 3.09 -64.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.286 kcal (2) G-P(sol) polarization free energy of solvation -67.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.602 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds