Wall clock time and date at job start Tue Mar 31 2020 00:14:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47062 * 2 1 4 4 N 1.30176 * 126.80025 * 270.02333 * 3 2 1 5 5 O 1.20926 * 111.60451 * 179.97438 * 4 3 2 6 6 C 1.34043 * 111.56463 * 359.76280 * 5 4 3 7 7 C 1.50703 * 126.77300 * 180.28570 * 6 5 4 8 8 C 1.35441 * 106.44786 * 0.38033 * 6 5 4 9 9 C 1.50706 * 128.00901 * 179.91398 * 8 6 5 10 10 N 1.46897 * 109.46900 * 269.68113 * 9 8 6 11 11 C 1.46849 * 111.00512 * 66.04184 * 10 9 8 12 12 C 1.53032 * 109.52495 * 185.83703 * 11 10 9 13 13 C 1.53118 * 109.28014 * 300.82166 * 12 11 10 14 14 C 1.53123 * 109.16111 * 57.65567 * 13 12 11 15 15 H 1.09001 * 109.50358 * 62.28517 * 14 13 12 16 16 C 1.50700 * 109.50439 * 182.36522 * 14 13 12 17 17 H 1.07995 * 120.00358 * 119.99889 * 16 14 13 18 18 C 1.37876 * 119.99656 * 299.99963 * 16 14 13 19 19 N 1.31518 * 120.00394 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99815 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47067 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47126 * 119.99831 * 20 18 16 23 23 H 1.48491 * 109.47348 * 239.99867 * 20 18 16 24 24 C 1.46852 * 110.99745 * 190.25613 * 10 9 8 25 25 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46933 * 300.00474 * 1 2 3 27 27 H 1.08998 * 109.47243 * 59.99966 * 1 2 3 28 28 H 1.08992 * 109.47295 * 239.99514 * 2 1 3 29 29 H 1.09006 * 109.47235 * 119.99367 * 2 1 3 30 30 H 1.09002 * 109.47550 * 270.10792 * 7 6 5 31 31 H 1.08995 * 109.47244 * 30.11495 * 7 6 5 32 32 H 1.09006 * 109.46761 * 150.10930 * 7 6 5 33 33 H 1.09000 * 109.46646 * 29.67220 * 9 8 6 34 34 H 1.09000 * 109.47248 * 149.67938 * 9 8 6 35 35 H 1.09000 * 109.46215 * 305.85514 * 11 10 9 36 36 H 1.09004 * 109.45920 * 65.81940 * 11 10 9 37 37 H 1.09005 * 109.50314 * 60.76135 * 12 11 10 38 38 H 1.08997 * 109.50390 * 180.88002 * 12 11 10 39 39 H 1.09005 * 109.52259 * 177.55809 * 13 12 11 40 40 H 1.08995 * 109.52360 * 297.74679 * 13 12 11 41 41 H 0.96997 * 119.99978 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.45985 * 294.17036 * 24 10 9 43 43 H 1.09000 * 109.46486 * 54.14246 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2918 2.1561 -1.0424 5 8 2.6805 3.2565 -0.7254 6 6 2.7253 3.3984 0.6068 7 6 3.1510 4.6265 1.3694 8 6 2.3145 2.2195 1.1320 9 6 2.1825 1.8473 2.5864 10 7 3.4453 1.2646 3.0593 11 6 4.5217 2.2634 3.0506 12 6 5.8481 1.5891 3.4080 13 6 5.7322 0.9484 4.7939 14 6 4.5733 -0.0524 4.7896 15 1 4.7813 -0.8469 4.0729 16 6 4.4153 -0.6451 6.1661 17 1 3.4866 -0.5223 6.7035 18 6 5.4563 -1.3441 6.7393 19 7 6.5870 -1.4941 6.0846 20 14 5.2606 -2.0782 8.4458 21 1 3.9033 -1.7712 8.9641 22 1 5.4416 -3.5504 8.3751 23 1 6.2811 -1.4972 9.3546 24 6 3.2838 0.6696 4.3921 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.2243 4.5851 1.5551 31 1 2.9173 5.5163 0.7850 32 1 2.6191 4.6663 2.3201 33 1 1.9527 2.7387 3.1701 34 1 1.3799 1.1191 2.7037 35 1 4.5963 2.7084 2.0583 36 1 4.3012 3.0414 3.7816 37 1 6.0761 0.8203 2.6696 38 1 6.6442 2.3336 3.4167 39 1 6.6604 0.4298 5.0342 40 1 5.5429 1.7219 5.5381 41 1 7.3192 -1.9863 6.4878 42 1 3.0692 1.4549 5.1168 43 1 2.4593 -0.0431 4.3742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595617429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:33 Heat of formation + Delta-G solvation = 41.409552 kcal Electronic energy + Delta-G solvation = -22553.443508 eV Core-core repulsion = 19408.028003 eV Total energy + Delta-G solvation = -3145.415505 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -44.78782 -38.41094 -35.69203 -34.30105 -32.97272 -31.70353 -31.11005 -29.81826 -28.18657 -26.15862 -24.95659 -24.25609 -22.44332 -21.65682 -20.58770 -19.75524 -18.62541 -17.55880 -16.82551 -16.35138 -15.17634 -14.84753 -14.71451 -14.41709 -14.06568 -13.86894 -13.51750 -13.22477 -13.15424 -12.82589 -12.65266 -12.45308 -12.30687 -12.05261 -11.76205 -11.56669 -11.47081 -11.23832 -10.97892 -10.70285 -10.65879 -10.63227 -10.11500 -9.85687 -9.76240 -9.49680 -9.20064 -8.94363 -8.71479 -8.31962 -7.70898 -5.98674 -4.05089 1.56140 2.34051 3.20151 3.28813 3.37209 3.40319 4.24920 4.40109 4.52532 4.62185 4.88494 5.04325 5.14049 5.28649 5.30092 5.31575 5.33314 5.49001 5.54972 5.68592 5.70728 5.74677 5.85352 5.88192 5.95500 6.05190 6.06823 6.15557 6.23167 6.31642 6.36754 6.47472 6.69377 6.72793 6.93615 7.19922 7.36948 7.62548 7.72826 7.77654 8.06611 8.16328 8.41177 8.46233 8.99311 9.59508 11.07270 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024148 B = 0.004489 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.232180 B = 6235.596844 C = 6858.424829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.048 4.048 3 C 0.042 3.958 4 N -0.374 5.374 5 O 0.090 5.910 6 C -0.038 4.038 7 C -0.074 4.074 8 C -0.176 4.176 9 C 0.130 3.870 10 N -0.532 5.532 11 C 0.060 3.940 12 C -0.117 4.117 13 C -0.110 4.110 14 C 0.055 3.945 15 H 0.034 0.966 16 C -0.514 4.514 17 H 0.054 0.946 18 C 0.063 3.937 19 N -0.888 5.888 20 Si 0.889 3.111 21 H -0.274 1.274 22 H -0.284 1.284 23 H -0.285 1.285 24 C 0.068 3.932 25 H 0.064 0.936 26 H 0.057 0.943 27 H 0.052 0.948 28 H 0.077 0.923 29 H 0.096 0.904 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.088 0.912 33 H 0.039 0.961 34 H 0.083 0.917 35 H 0.059 0.941 36 H 0.023 0.977 37 H 0.059 0.941 38 H 0.045 0.955 39 H 0.091 0.909 40 H 0.030 0.970 41 H 0.259 0.741 42 H 0.020 0.980 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.363 9.405 -9.300 15.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.086 4.086 3 C -0.117 4.117 4 N -0.080 5.080 5 O 0.027 5.973 6 C -0.102 4.102 7 C -0.131 4.131 8 C -0.180 4.180 9 C 0.001 3.999 10 N -0.257 5.257 11 C -0.067 4.067 12 C -0.155 4.155 13 C -0.148 4.148 14 C 0.036 3.964 15 H 0.052 0.948 16 C -0.553 4.553 17 H 0.072 0.928 18 C -0.138 4.138 19 N -0.527 5.527 20 Si 0.717 3.283 21 H -0.199 1.199 22 H -0.210 1.210 23 H -0.211 1.211 24 C -0.058 4.058 25 H 0.083 0.917 26 H 0.076 0.924 27 H 0.071 0.929 28 H 0.096 0.904 29 H 0.114 0.886 30 H 0.108 0.892 31 H 0.099 0.901 32 H 0.107 0.893 33 H 0.057 0.943 34 H 0.102 0.898 35 H 0.077 0.923 36 H 0.041 0.959 37 H 0.078 0.922 38 H 0.064 0.936 39 H 0.109 0.891 40 H 0.048 0.952 41 H 0.069 0.931 42 H 0.038 0.962 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -8.123 8.758 -10.914 16.180 hybrid contribution -0.207 0.174 2.254 2.270 sum -8.330 8.932 -8.660 14.972 Atomic orbital electron populations 1.21704 0.94306 1.02158 1.01984 1.19960 0.95910 0.88378 1.04368 1.23370 1.01190 0.98887 0.88240 1.73789 1.17280 0.92860 1.24064 1.84763 1.63116 1.26975 1.22481 1.24179 1.03183 0.98967 0.83862 1.20402 1.02824 0.91464 0.98436 1.20913 1.06651 0.92842 0.97611 1.20267 0.93896 0.98304 0.87397 1.62002 1.03487 1.32117 1.28094 1.22154 0.92771 0.92883 0.98925 1.21675 0.94207 0.99099 1.00554 1.21652 1.03822 0.97548 0.91801 1.18665 0.88476 0.93238 0.95988 0.94778 1.21172 0.99441 1.33459 1.01212 0.92786 1.24931 0.95322 0.96054 0.97499 1.69902 1.03876 1.41500 1.37400 0.86583 0.78054 0.78948 0.84676 1.19857 1.21049 1.21109 1.22333 1.01468 0.96812 0.85195 0.91685 0.92414 0.92860 0.90406 0.88577 0.89248 0.90140 0.89314 0.94265 0.89833 0.92296 0.95864 0.92227 0.93587 0.89116 0.95163 0.93106 0.96178 0.92164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 37.16 0.37 -1.14 16 2 C -0.05 -0.61 6.44 -27.88 -0.18 -0.79 16 3 C 0.04 0.63 6.58 -82.10 -0.54 0.09 16 4 N -0.37 -5.84 12.07 33.43 0.40 -5.44 16 5 O 0.09 1.31 11.20 17.17 0.19 1.50 16 6 C -0.04 -0.49 6.58 -35.30 -0.23 -0.72 16 7 C -0.07 -0.68 9.35 36.01 0.34 -0.35 16 8 C -0.18 -2.51 5.16 -104.42 -0.54 -3.05 16 9 C 0.13 1.88 5.29 -4.97 -0.03 1.86 16 10 N -0.53 -9.41 4.65 -236.11 -1.10 -10.51 16 11 C 0.06 1.02 4.83 -3.84 -0.02 1.00 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 13 C -0.11 -2.55 5.02 -26.61 -0.13 -2.69 16 14 C 0.06 1.34 2.26 -91.69 -0.21 1.14 16 15 H 0.03 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.51 -13.77 8.57 -34.44 -0.30 -14.07 16 17 H 0.05 1.43 7.74 -52.49 -0.41 1.02 16 18 C 0.06 1.72 5.30 -17.82 -0.09 1.63 16 19 N -0.89 -25.07 11.35 55.43 0.63 -24.44 16 20 Si 0.89 20.94 29.54 -169.99 -5.02 15.92 16 21 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 22 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 23 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 24 C 0.07 1.39 4.68 -3.83 -0.02 1.37 16 25 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 29 H 0.10 1.28 8.14 -51.93 -0.42 0.86 16 30 H 0.09 0.80 7.06 -51.93 -0.37 0.44 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.76 7.44 -51.93 -0.39 0.37 16 33 H 0.04 0.53 7.42 -51.93 -0.39 0.14 16 34 H 0.08 1.16 7.98 -51.93 -0.41 0.75 16 35 H 0.06 0.91 4.68 -51.93 -0.24 0.67 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.09 2.37 6.15 -51.93 -0.32 2.06 16 40 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 41 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 1.19 8.01 -51.93 -0.42 0.78 16 LS Contribution 338.67 15.07 5.10 5.10 Total: -1.00 -29.09 338.67 -8.68 -37.77 By element: Atomic # 1 Polarization: 5.40 SS G_CDS: -7.15 Total: -1.74 kcal Atomic # 6 Polarization: -16.41 SS G_CDS: -1.74 Total: -18.16 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: -0.06 Total: -40.39 kcal Atomic # 8 Polarization: 1.31 SS G_CDS: 0.19 Total: 1.50 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.09 -8.68 -37.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.175 kcal (2) G-P(sol) polarization free energy of solvation -29.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds