Wall clock time and date at job start Tue Mar 31 2020 00:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50699 * 109.47062 * 2 1 4 4 N 1.30176 * 126.80025 * 270.02333 * 3 2 1 5 5 O 1.20926 * 111.60451 * 179.97438 * 4 3 2 6 6 C 1.34043 * 111.56463 * 359.76280 * 5 4 3 7 7 C 1.50703 * 126.77300 * 180.28570 * 6 5 4 8 8 C 1.35441 * 106.44786 * 0.38033 * 6 5 4 9 9 C 1.50706 * 128.00901 * 179.91398 * 8 6 5 10 10 N 1.46897 * 109.46900 * 269.68113 * 9 8 6 11 11 C 1.46849 * 111.00512 * 66.04184 * 10 9 8 12 12 C 1.53032 * 109.52495 * 185.83703 * 11 10 9 13 13 C 1.53118 * 109.28014 * 300.82166 * 12 11 10 14 14 C 1.53123 * 109.16111 * 57.65567 * 13 12 11 15 15 H 1.09001 * 109.50358 * 62.28517 * 14 13 12 16 16 C 1.50700 * 109.50439 * 182.36522 * 14 13 12 17 17 H 1.07995 * 120.00358 * 119.99889 * 16 14 13 18 18 C 1.37876 * 119.99656 * 299.99963 * 16 14 13 19 19 N 1.31518 * 120.00394 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 119.99815 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47067 * 0.02562 * 20 18 16 22 22 H 1.48499 * 109.47126 * 119.99831 * 20 18 16 23 23 H 1.48491 * 109.47348 * 239.99867 * 20 18 16 24 24 C 1.46852 * 110.99745 * 190.25613 * 10 9 8 25 25 H 1.08997 * 109.47150 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.46933 * 300.00474 * 1 2 3 27 27 H 1.08998 * 109.47243 * 59.99966 * 1 2 3 28 28 H 1.08992 * 109.47295 * 239.99514 * 2 1 3 29 29 H 1.09006 * 109.47235 * 119.99367 * 2 1 3 30 30 H 1.09002 * 109.47550 * 270.10792 * 7 6 5 31 31 H 1.08995 * 109.47244 * 30.11495 * 7 6 5 32 32 H 1.09006 * 109.46761 * 150.10930 * 7 6 5 33 33 H 1.09000 * 109.46646 * 29.67220 * 9 8 6 34 34 H 1.09000 * 109.47248 * 149.67938 * 9 8 6 35 35 H 1.09000 * 109.46215 * 305.85514 * 11 10 9 36 36 H 1.09004 * 109.45920 * 65.81940 * 11 10 9 37 37 H 1.09005 * 109.50314 * 60.76135 * 12 11 10 38 38 H 1.08997 * 109.50390 * 180.88002 * 12 11 10 39 39 H 1.09005 * 109.52259 * 177.55809 * 13 12 11 40 40 H 1.08995 * 109.52360 * 297.74679 * 13 12 11 41 41 H 0.96997 * 119.99978 * 180.02562 * 19 18 16 42 42 H 1.09000 * 109.45985 * 294.17036 * 24 10 9 43 43 H 1.09000 * 109.46486 * 54.14246 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2918 2.1561 -1.0424 5 8 2.6805 3.2565 -0.7254 6 6 2.7253 3.3984 0.6068 7 6 3.1510 4.6265 1.3694 8 6 2.3145 2.2195 1.1320 9 6 2.1825 1.8473 2.5864 10 7 3.4453 1.2646 3.0593 11 6 4.5217 2.2634 3.0506 12 6 5.8481 1.5891 3.4080 13 6 5.7322 0.9484 4.7939 14 6 4.5733 -0.0524 4.7896 15 1 4.7813 -0.8469 4.0729 16 6 4.4153 -0.6451 6.1661 17 1 3.4866 -0.5223 6.7035 18 6 5.4563 -1.3441 6.7393 19 7 6.5870 -1.4941 6.0846 20 14 5.2606 -2.0782 8.4458 21 1 3.9033 -1.7712 8.9641 22 1 5.4416 -3.5504 8.3751 23 1 6.2811 -1.4972 9.3546 24 6 3.2838 0.6696 4.3921 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8934 -0.5138 0.8901 30 1 4.2243 4.5851 1.5551 31 1 2.9173 5.5163 0.7850 32 1 2.6191 4.6663 2.3201 33 1 1.9527 2.7387 3.1701 34 1 1.3799 1.1191 2.7037 35 1 4.5963 2.7084 2.0583 36 1 4.3012 3.0414 3.7816 37 1 6.0761 0.8203 2.6696 38 1 6.6442 2.3336 3.4167 39 1 6.6604 0.4298 5.0342 40 1 5.5429 1.7219 5.5381 41 1 7.3192 -1.9863 6.4878 42 1 3.0692 1.4549 5.1168 43 1 2.4593 -0.0431 4.3742 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595617429.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:14:32 Heat of formation + Delta-G solvation = 25.114212 kcal Electronic energy + Delta-G solvation = -22554.150127 eV Core-core repulsion = 19408.028003 eV Total energy + Delta-G solvation = -3146.122124 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.87605 -39.90119 -36.90428 -35.65561 -34.46342 -33.18269 -32.16985 -31.58236 -29.20783 -27.36747 -26.85461 -25.24340 -23.90423 -23.26919 -21.88299 -20.76735 -20.32454 -18.68244 -18.38541 -17.85490 -16.77429 -16.32652 -15.93814 -15.67964 -15.40041 -14.99758 -14.93349 -14.44297 -14.27002 -14.21955 -13.99554 -13.68047 -13.51356 -13.32982 -13.10628 -12.87261 -12.81957 -12.50493 -12.47373 -12.39714 -12.25100 -11.79263 -11.70312 -11.65854 -11.37006 -10.97357 -10.75092 -10.62957 -10.35968 -10.09857 -9.08982 -8.05789 -6.19782 0.53087 1.24074 1.41795 1.44140 1.54806 2.23776 2.44871 3.15719 3.21807 3.29892 3.56046 3.82484 4.05996 4.19051 4.23810 4.28516 4.36960 4.39666 4.44452 4.59714 4.62302 4.64342 4.70471 4.71751 4.81507 4.89090 4.91268 5.00519 5.00593 5.04311 5.11782 5.15761 5.20647 5.25089 5.34300 5.40709 5.54721 5.66423 5.98774 6.15203 6.24206 6.34668 6.48479 6.94112 7.35700 7.48562 8.98987 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.024148 B = 0.004489 C = 0.004082 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.232180 B = 6235.596844 C = 6858.424829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.049 4.049 3 C 0.033 3.967 4 N -0.398 5.398 5 O 0.084 5.916 6 C -0.023 4.023 7 C -0.077 4.077 8 C -0.197 4.197 9 C 0.136 3.864 10 N -0.546 5.546 11 C 0.067 3.933 12 C -0.112 4.112 13 C -0.102 4.102 14 C 0.052 3.948 15 H -0.008 1.008 16 C -0.531 4.531 17 H 0.054 0.946 18 C 0.014 3.986 19 N -0.918 5.918 20 Si 0.953 3.047 21 H -0.265 1.265 22 H -0.283 1.283 23 H -0.282 1.282 24 C 0.084 3.916 25 H 0.080 0.920 26 H 0.059 0.941 27 H 0.051 0.949 28 H 0.077 0.923 29 H 0.086 0.914 30 H 0.097 0.903 31 H 0.104 0.896 32 H 0.101 0.899 33 H 0.059 0.941 34 H 0.087 0.913 35 H 0.079 0.921 36 H 0.039 0.961 37 H 0.040 0.960 38 H 0.069 0.931 39 H 0.054 0.946 40 H 0.027 0.973 41 H 0.259 0.741 42 H 0.024 0.976 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.506 11.050 -8.992 17.127 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.087 4.087 3 C -0.126 4.126 4 N -0.106 5.106 5 O 0.022 5.978 6 C -0.088 4.088 7 C -0.134 4.134 8 C -0.202 4.202 9 C 0.009 3.991 10 N -0.271 5.271 11 C -0.060 4.060 12 C -0.150 4.150 13 C -0.141 4.141 14 C 0.033 3.967 15 H 0.011 0.989 16 C -0.570 4.570 17 H 0.073 0.927 18 C -0.185 4.185 19 N -0.557 5.557 20 Si 0.779 3.221 21 H -0.189 1.189 22 H -0.209 1.209 23 H -0.208 1.208 24 C -0.043 4.043 25 H 0.099 0.901 26 H 0.078 0.922 27 H 0.070 0.930 28 H 0.095 0.905 29 H 0.105 0.895 30 H 0.115 0.885 31 H 0.123 0.877 32 H 0.119 0.881 33 H 0.077 0.923 34 H 0.105 0.895 35 H 0.097 0.903 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.087 0.913 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.068 0.932 42 H 0.042 0.958 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.279 10.421 -10.616 17.532 hybrid contribution 0.173 -0.329 2.116 2.149 sum -9.106 10.092 -8.499 16.032 Atomic orbital electron populations 1.21656 0.92560 1.03230 1.01957 1.20010 0.97408 0.87485 1.03822 1.23732 1.00813 0.99573 0.88467 1.73784 1.18610 0.93495 1.24753 1.84738 1.63081 1.26636 1.23357 1.24828 1.00999 0.99665 0.83285 1.20640 1.03284 0.90650 0.98790 1.20918 1.08442 0.93563 0.97242 1.20226 0.92174 0.99049 0.87657 1.61877 1.05426 1.33414 1.26382 1.22108 0.90923 0.92601 1.00387 1.21588 0.96876 0.99117 0.97380 1.21448 1.01513 0.96963 0.94156 1.18589 0.91246 0.92839 0.93990 0.98946 1.21555 0.99398 1.33652 1.02370 0.92737 1.25710 0.95067 0.96584 1.01135 1.70054 1.04546 1.42169 1.38964 0.85589 0.78307 0.77957 0.80289 1.18918 1.20937 1.20760 1.21969 0.98888 0.96685 0.86753 0.90095 0.92223 0.93005 0.90457 0.89548 0.88457 0.87730 0.88078 0.92280 0.89459 0.90311 0.94296 0.94157 0.91277 0.92716 0.95387 0.93203 0.95829 0.92148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.70 9.89 71.98 0.71 -1.99 16 2 C -0.05 -1.22 6.44 29.85 0.19 -1.03 16 3 C 0.03 0.94 6.58 43.58 0.29 1.23 16 4 N -0.40 -12.09 12.07 -49.54 -0.60 -12.69 16 5 O 0.08 2.29 11.20 71.60 0.80 3.09 16 6 C -0.02 -0.55 6.58 25.04 0.16 -0.38 16 7 C -0.08 -1.12 9.35 71.24 0.67 -0.45 16 8 C -0.20 -5.24 5.16 -19.73 -0.10 -5.34 16 9 C 0.14 3.65 5.29 85.56 0.45 4.10 16 10 N -0.55 -18.53 4.65 -900.91 -4.19 -22.72 16 11 C 0.07 2.12 4.83 86.32 0.42 2.54 16 12 C -0.11 -4.24 6.09 30.64 0.19 -4.05 16 13 C -0.10 -4.82 5.02 30.67 0.15 -4.66 16 14 C 0.05 2.60 2.26 -11.49 -0.03 2.57 16 15 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 16 C -0.53 -28.82 8.57 25.60 0.22 -28.60 16 17 H 0.05 2.88 7.74 -2.91 -0.02 2.85 16 18 C 0.01 0.74 5.30 84.65 0.45 1.19 16 19 N -0.92 -53.23 11.35 21.45 0.24 -52.99 16 20 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 22 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 23 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 24 C 0.08 3.35 4.68 86.33 0.40 3.76 16 25 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 26 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 27 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 28 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.09 2.30 8.14 -2.38 -0.02 2.28 16 30 H 0.10 1.34 7.06 -2.39 -0.02 1.33 16 31 H 0.10 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.10 1.28 7.44 -2.38 -0.02 1.26 16 33 H 0.06 1.37 7.42 -2.39 -0.02 1.35 16 34 H 0.09 2.26 7.98 -2.39 -0.02 2.24 16 35 H 0.08 2.19 4.68 -2.39 -0.01 2.18 16 36 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 37 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 38 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 39 H 0.05 2.96 6.15 -2.38 -0.01 2.94 16 40 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.26 14.30 8.31 -92.71 -0.77 13.53 16 42 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.06 2.37 8.01 -2.39 -0.02 2.35 16 Total: -1.00 -63.92 338.67 3.44 -60.48 By element: Atomic # 1 Polarization: 9.73 SS G_CDS: 0.98 Total: 10.71 kcal Atomic # 6 Polarization: -35.29 SS G_CDS: 4.18 Total: -31.11 kcal Atomic # 7 Polarization: -83.85 SS G_CDS: -4.54 Total: -88.39 kcal Atomic # 8 Polarization: 2.29 SS G_CDS: 0.80 Total: 3.09 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.92 3.44 -60.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595617429.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.590 kcal (2) G-P(sol) polarization free energy of solvation -63.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.443 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds