Wall clock time and date at job start Tue Mar 31 2020 00:06:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.27570 * 126.41708 * 2 1 4 4 N 1.39144 * 113.16195 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.43833 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.43931 * 181.06136 * 5 4 3 7 7 C 1.54896 * 110.48592 * 58.52260 * 5 4 3 8 8 C 1.54889 * 102.74871 * 203.38210 * 7 5 4 9 9 C 1.54261 * 104.19785 * 37.93910 * 8 7 5 10 10 C 1.53870 * 106.60054 * 336.39308 * 9 8 7 11 11 C 1.53001 * 110.03381 * 240.71697 * 10 9 8 12 12 C 1.53000 * 110.03735 * 119.28346 * 10 9 8 13 13 C 1.34952 * 111.12865 * 359.97438 * 4 3 2 14 14 O 1.21296 * 127.50698 * 179.97438 * 13 4 3 15 15 C 1.51446 * 126.41353 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.60455 * 61.52585 * 15 2 1 17 17 C 1.52995 * 110.61032 * 298.55305 * 15 2 1 18 18 C 1.50697 * 109.47065 * 175.00086 * 17 15 2 19 19 H 1.08002 * 119.99965 * 0.02562 * 18 17 15 20 20 C 1.37874 * 119.99748 * 179.97438 * 18 17 15 21 21 N 1.31516 * 120.00205 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99830 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47522 * 60.00076 * 22 20 18 24 24 H 1.48512 * 109.47169 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47260 * 299.99875 * 22 20 18 26 26 H 1.08999 * 109.47153 * 270.04070 * 1 2 3 27 27 H 1.08997 * 109.47203 * 30.04383 * 1 2 3 28 28 H 1.09010 * 109.47377 * 150.03893 * 1 2 3 29 29 H 1.09004 * 110.75372 * 321.69479 * 7 5 4 30 30 H 1.08994 * 110.75636 * 85.06411 * 7 5 4 31 31 H 1.08998 * 110.48533 * 156.62304 * 8 7 5 32 32 H 1.09003 * 110.48270 * 279.13022 * 8 7 5 33 33 H 1.09003 * 110.03136 * 95.67270 * 9 8 7 34 34 H 1.09000 * 110.03515 * 217.05344 * 9 8 7 35 35 H 1.08994 * 109.47403 * 177.16401 * 11 10 9 36 36 H 1.09006 * 109.46792 * 297.16021 * 11 10 9 37 37 H 1.08998 * 109.47519 * 57.16104 * 11 10 9 38 38 H 1.09000 * 109.46942 * 302.83143 * 12 10 9 39 39 H 1.08999 * 109.47208 * 62.82808 * 12 10 9 40 40 H 1.08999 * 109.47216 * 182.83728 * 12 10 9 41 41 H 1.09003 * 109.46871 * 295.00283 * 17 15 2 42 42 H 1.08995 * 109.47166 * 54.99944 * 17 15 2 43 43 H 0.96998 * 119.99910 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7075 0.0006 5 6 4.7021 1.6936 0.0002 6 1 5.6710 1.1946 -0.0182 7 6 4.5927 2.6197 1.2370 8 6 5.3558 3.8886 0.7824 9 6 4.9770 4.0455 -0.7047 10 6 4.5613 2.6500 -1.2021 11 6 5.4831 2.2025 -2.3384 12 6 3.1094 2.6761 -1.6838 13 6 3.8035 -0.6293 0.0016 14 8 4.8578 -1.2290 0.0018 15 6 2.4060 -1.2188 0.0005 16 1 2.2422 -1.8166 -0.8960 17 6 2.1748 -2.0579 1.2588 18 6 2.9895 -3.3230 1.1755 19 1 3.6103 -3.5096 0.3117 20 6 2.9430 -4.2417 2.2025 21 7 2.1873 -4.0142 3.2546 22 14 3.9533 -5.8095 2.0997 23 1 5.3936 -5.4641 1.9923 24 1 3.7289 -6.6241 3.3210 25 1 3.5402 -6.5870 0.9039 26 1 -0.3633 0.0007 1.0277 27 1 -0.3633 0.8896 -0.5145 28 1 -0.3634 -0.8904 -0.5133 29 1 3.5502 2.8528 1.4539 30 1 5.0767 2.1671 2.1024 31 1 5.0268 4.7567 1.3536 32 1 6.4311 3.7466 0.8913 33 1 4.1442 4.7414 -0.8065 34 1 5.8351 4.4049 -1.2727 35 1 5.2128 1.1935 -2.6495 36 1 5.3764 2.8839 -3.1825 37 1 6.5168 2.2114 -1.9927 38 1 2.4645 3.0199 -0.8751 39 1 3.0203 3.3541 -2.5326 40 1 2.8089 1.6731 -1.9866 41 1 2.4782 -1.4875 2.1367 42 1 1.1176 -2.3111 1.3375 43 1 2.1549 -4.6604 3.9773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601944779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:11 Heat of formation + Delta-G solvation = 6.303207 kcal Electronic energy + Delta-G solvation = -22967.861360 eV Core-core repulsion = 19820.923530 eV Total energy + Delta-G solvation = -3146.937830 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.97805 -38.68729 -36.72812 -33.70328 -32.46679 -32.18815 -30.34562 -29.07924 -27.39461 -26.84152 -25.64423 -24.19339 -22.32258 -20.87505 -20.04607 -19.40478 -18.24418 -16.51655 -16.17479 -15.45235 -15.26182 -14.71771 -14.49886 -14.16269 -13.91163 -13.54098 -13.25864 -13.17854 -12.97755 -12.80903 -12.35375 -12.28684 -12.10166 -12.05077 -11.55704 -11.41485 -11.31383 -11.12923 -11.06062 -10.78517 -10.68677 -10.60463 -10.51266 -10.47683 -10.38055 -10.06247 -9.46817 -9.31661 -8.72088 -8.34126 -7.98745 -6.01075 -4.02142 2.24006 2.89239 3.28691 3.37849 3.40742 3.46975 4.41813 4.48484 4.56723 4.61969 4.76229 4.89639 5.25264 5.26535 5.34721 5.36099 5.41915 5.46869 5.52844 5.61325 5.72993 5.81051 5.83202 5.86338 5.88583 5.91306 5.98492 6.04167 6.09390 6.15147 6.16601 6.26016 6.31711 6.39147 6.48820 6.56322 6.78247 7.01194 7.45030 7.50542 7.96972 8.26254 8.32416 8.62142 9.02593 9.62002 11.10153 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.005213 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.589084 B = 5370.066629 C = 5833.008024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.089 3.911 3 N -0.245 5.245 4 N -0.472 5.472 5 C 0.174 3.826 6 H 0.102 0.898 7 C -0.132 4.132 8 C -0.122 4.122 9 C -0.111 4.111 10 C -0.078 4.078 11 C -0.139 4.139 12 C -0.122 4.122 13 C 0.509 3.491 14 O -0.490 6.490 15 C -0.131 4.131 16 H 0.118 0.882 17 C 0.057 3.943 18 C -0.514 4.514 19 H 0.062 0.938 20 C 0.059 3.941 21 N -0.898 5.898 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.288 1.288 25 H -0.276 1.276 26 H 0.086 0.914 27 H 0.074 0.926 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.053 0.947 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.040 0.960 40 H 0.053 0.947 41 H 0.018 0.982 42 H 0.037 0.963 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.273 15.874 -8.216 17.876 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.103 4.103 3 N -0.051 5.051 4 N -0.292 5.292 5 C 0.071 3.929 6 H 0.120 0.880 7 C -0.170 4.170 8 C -0.160 4.160 9 C -0.149 4.149 10 C -0.079 4.079 11 C -0.196 4.196 12 C -0.180 4.180 13 C 0.297 3.703 14 O -0.361 6.361 15 C -0.154 4.154 16 H 0.135 0.865 17 C 0.019 3.981 18 C -0.553 4.553 19 H 0.080 0.920 20 C -0.142 4.142 21 N -0.538 5.538 22 Si 0.723 3.277 23 H -0.202 1.202 24 H -0.214 1.214 25 H -0.202 1.202 26 H 0.105 0.895 27 H 0.093 0.907 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.072 0.928 41 H 0.037 0.963 42 H 0.055 0.945 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.528 16.514 -8.056 18.382 hybrid contribution 0.757 -1.733 0.086 1.893 sum 1.285 14.781 -7.970 16.842 Atomic orbital electron populations 1.20247 0.85559 1.03317 1.03844 1.25436 0.97230 0.92010 0.95636 1.74578 0.89140 1.26394 1.15023 1.49733 1.02355 1.05979 1.71150 1.21949 0.88235 0.87946 0.94771 0.88009 1.22832 1.01814 0.95173 0.97228 1.22281 1.00013 0.97733 0.95938 1.22229 1.00963 0.95925 0.95786 1.21461 0.97012 0.94550 0.94836 1.21913 0.98847 1.01213 0.97625 1.21936 0.94331 1.01216 1.00493 1.21453 0.91977 0.81996 0.74833 1.90702 1.31272 1.65948 1.48151 1.22054 0.90808 0.96463 1.06100 0.86450 1.18853 0.98415 0.93166 0.87693 1.21141 1.26266 1.02906 1.04937 0.91961 1.24946 0.95488 0.98501 0.95216 1.69943 1.39496 1.36250 1.08070 0.86602 0.80995 0.82924 0.77224 1.20152 1.21351 1.20159 0.89513 0.90749 0.89797 0.90090 0.91330 0.91436 0.91600 0.91461 0.91740 0.92803 0.92639 0.92625 0.90741 0.94149 0.92806 0.96338 0.94517 0.92915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.87 10.47 36.00 0.38 -0.49 16 2 C 0.09 1.48 6.93 -78.72 -0.55 0.94 16 3 N -0.24 -4.09 7.71 35.53 0.27 -3.82 16 4 N -0.47 -8.65 2.81 -51.79 -0.15 -8.79 16 5 C 0.17 2.70 3.07 -66.27 -0.20 2.49 16 6 H 0.10 1.70 7.46 -51.93 -0.39 1.31 16 7 C -0.13 -1.81 6.54 -24.73 -0.16 -1.98 16 8 C -0.12 -1.29 6.83 -25.07 -0.17 -1.46 16 9 C -0.11 -1.15 6.11 -25.62 -0.16 -1.31 16 10 C -0.08 -0.98 0.91 -153.39 -0.14 -1.12 16 11 C -0.14 -1.67 8.16 37.16 0.30 -1.37 16 12 C -0.12 -1.58 6.70 37.16 0.25 -1.33 16 13 C 0.51 11.28 7.60 -10.42 -0.08 11.20 16 14 O -0.49 -12.53 16.82 5.54 0.09 -12.43 16 15 C -0.13 -2.71 2.96 -92.08 -0.27 -2.98 16 16 H 0.12 2.34 8.14 -51.93 -0.42 1.92 16 17 C 0.06 1.43 4.49 -27.89 -0.13 1.31 16 18 C -0.51 -14.68 8.44 -34.44 -0.29 -14.97 16 19 H 0.06 1.81 7.43 -52.49 -0.39 1.42 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 22 Si 0.89 22.40 29.54 -169.99 -5.02 17.38 16 23 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 25 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 26 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 28 H 0.08 0.93 8.14 -51.92 -0.42 0.51 16 29 H 0.08 1.17 7.88 -51.93 -0.41 0.76 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.07 0.66 7.67 -51.93 -0.40 0.26 16 34 H 0.06 0.59 7.67 -51.93 -0.40 0.19 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 38 H 0.07 1.00 7.00 -51.93 -0.36 0.64 16 39 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.80 6.59 -51.93 -0.34 0.46 16 41 H 0.02 0.51 8.12 -51.93 -0.42 0.09 16 42 H 0.04 0.92 8.12 -51.93 -0.42 0.49 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 LS Contribution 341.96 15.07 5.15 5.15 Total: -1.00 -32.25 341.96 -7.54 -39.79 By element: Atomic # 1 Polarization: 5.52 SS G_CDS: -7.32 Total: -1.80 kcal Atomic # 6 Polarization: -8.13 SS G_CDS: -1.32 Total: -9.44 kcal Atomic # 7 Polarization: -39.52 SS G_CDS: 0.86 Total: -38.65 kcal Atomic # 8 Polarization: -12.53 SS G_CDS: 0.09 Total: -12.43 kcal Atomic # 14 Polarization: 22.40 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.25 -7.54 -39.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601944779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.096 kcal (2) G-P(sol) polarization free energy of solvation -32.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.845 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds