Wall clock time and date at job start Tue Mar 31 2020 00:06:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.27570 * 126.41708 * 2 1 4 4 N 1.39144 * 113.16195 * 179.97438 * 3 2 1 5 5 C 1.46500 * 124.43833 * 179.97438 * 4 3 2 6 6 H 1.08998 * 110.43931 * 181.06136 * 5 4 3 7 7 C 1.54896 * 110.48592 * 58.52260 * 5 4 3 8 8 C 1.54889 * 102.74871 * 203.38210 * 7 5 4 9 9 C 1.54261 * 104.19785 * 37.93910 * 8 7 5 10 10 C 1.53870 * 106.60054 * 336.39308 * 9 8 7 11 11 C 1.53001 * 110.03381 * 240.71697 * 10 9 8 12 12 C 1.53000 * 110.03735 * 119.28346 * 10 9 8 13 13 C 1.34952 * 111.12865 * 359.97438 * 4 3 2 14 14 O 1.21296 * 127.50698 * 179.97438 * 13 4 3 15 15 C 1.51446 * 126.41353 * 179.97438 * 2 1 3 16 16 H 1.09000 * 110.60455 * 61.52585 * 15 2 1 17 17 C 1.52995 * 110.61032 * 298.55305 * 15 2 1 18 18 C 1.50697 * 109.47065 * 175.00086 * 17 15 2 19 19 H 1.08002 * 119.99965 * 0.02562 * 18 17 15 20 20 C 1.37874 * 119.99748 * 179.97438 * 18 17 15 21 21 N 1.31516 * 120.00205 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99830 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47522 * 60.00076 * 22 20 18 24 24 H 1.48512 * 109.47169 * 180.02562 * 22 20 18 25 25 H 1.48501 * 109.47260 * 299.99875 * 22 20 18 26 26 H 1.08999 * 109.47153 * 270.04070 * 1 2 3 27 27 H 1.08997 * 109.47203 * 30.04383 * 1 2 3 28 28 H 1.09010 * 109.47377 * 150.03893 * 1 2 3 29 29 H 1.09004 * 110.75372 * 321.69479 * 7 5 4 30 30 H 1.08994 * 110.75636 * 85.06411 * 7 5 4 31 31 H 1.08998 * 110.48533 * 156.62304 * 8 7 5 32 32 H 1.09003 * 110.48270 * 279.13022 * 8 7 5 33 33 H 1.09003 * 110.03136 * 95.67270 * 9 8 7 34 34 H 1.09000 * 110.03515 * 217.05344 * 9 8 7 35 35 H 1.08994 * 109.47403 * 177.16401 * 11 10 9 36 36 H 1.09006 * 109.46792 * 297.16021 * 11 10 9 37 37 H 1.08998 * 109.47519 * 57.16104 * 11 10 9 38 38 H 1.09000 * 109.46942 * 302.83143 * 12 10 9 39 39 H 1.08999 * 109.47208 * 62.82808 * 12 10 9 40 40 H 1.08999 * 109.47216 * 182.83728 * 12 10 9 41 41 H 1.09003 * 109.46871 * 295.00283 * 17 15 2 42 42 H 1.08995 * 109.47166 * 54.99944 * 17 15 2 43 43 H 0.96998 * 119.99910 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7075 0.0006 5 6 4.7021 1.6936 0.0002 6 1 5.6710 1.1946 -0.0182 7 6 4.5927 2.6197 1.2370 8 6 5.3558 3.8886 0.7824 9 6 4.9770 4.0455 -0.7047 10 6 4.5613 2.6500 -1.2021 11 6 5.4831 2.2025 -2.3384 12 6 3.1094 2.6761 -1.6838 13 6 3.8035 -0.6293 0.0016 14 8 4.8578 -1.2290 0.0018 15 6 2.4060 -1.2188 0.0005 16 1 2.2422 -1.8166 -0.8960 17 6 2.1748 -2.0579 1.2588 18 6 2.9895 -3.3230 1.1755 19 1 3.6103 -3.5096 0.3117 20 6 2.9430 -4.2417 2.2025 21 7 2.1873 -4.0142 3.2546 22 14 3.9533 -5.8095 2.0997 23 1 5.3936 -5.4641 1.9923 24 1 3.7289 -6.6241 3.3210 25 1 3.5402 -6.5870 0.9039 26 1 -0.3633 0.0007 1.0277 27 1 -0.3633 0.8896 -0.5145 28 1 -0.3634 -0.8904 -0.5133 29 1 3.5502 2.8528 1.4539 30 1 5.0767 2.1671 2.1024 31 1 5.0268 4.7567 1.3536 32 1 6.4311 3.7466 0.8913 33 1 4.1442 4.7414 -0.8065 34 1 5.8351 4.4049 -1.2727 35 1 5.2128 1.1935 -2.6495 36 1 5.3764 2.8839 -3.1825 37 1 6.5168 2.2114 -1.9927 38 1 2.4645 3.0199 -0.8751 39 1 3.0203 3.3541 -2.5326 40 1 2.8089 1.6731 -1.9866 41 1 2.4782 -1.4875 2.1367 42 1 1.1176 -2.3111 1.3375 43 1 2.1549 -4.6604 3.9773 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601944779.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:10 Heat of formation + Delta-G solvation = -12.069423 kcal Electronic energy + Delta-G solvation = -22968.658057 eV Core-core repulsion = 19820.923530 eV Total energy + Delta-G solvation = -3147.734528 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.47342 -39.83930 -38.44355 -35.64015 -34.08619 -33.20145 -32.18453 -30.17241 -28.68386 -28.02618 -27.35112 -25.34896 -24.21862 -21.94091 -21.67839 -20.69863 -19.61813 -18.43825 -17.72183 -17.10987 -16.57022 -16.32723 -16.11922 -15.61834 -15.20821 -14.83668 -14.56640 -14.31238 -14.26439 -14.13221 -13.85733 -13.54809 -13.44637 -13.22833 -13.20038 -13.10949 -12.80929 -12.63683 -12.51204 -12.27901 -12.07909 -11.90481 -11.70351 -11.66210 -11.50861 -11.45332 -11.31002 -11.18545 -10.63997 -10.36159 -9.45493 -8.24219 -6.32003 0.72913 1.35045 1.38677 1.45534 1.47161 1.66921 2.38548 2.99792 3.11372 3.33190 3.48815 3.58513 3.79517 3.99736 4.19600 4.27744 4.32831 4.33590 4.38885 4.43835 4.63727 4.67071 4.74563 4.76433 4.84624 4.90549 4.93540 4.98263 5.03333 5.07226 5.13125 5.15402 5.26852 5.32041 5.34117 5.36847 5.37867 5.47384 5.54491 5.70812 5.73747 6.13559 6.74883 6.78898 6.96457 7.35520 8.86740 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022619 B = 0.005213 C = 0.004799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1237.589084 B = 5370.066629 C = 5833.008024 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.101 3.899 3 N -0.236 5.236 4 N -0.465 5.465 5 C 0.157 3.843 6 H 0.081 0.919 7 C -0.131 4.131 8 C -0.113 4.113 9 C -0.103 4.103 10 C -0.074 4.074 11 C -0.136 4.136 12 C -0.117 4.117 13 C 0.493 3.507 14 O -0.540 6.540 15 C -0.134 4.134 16 H 0.124 0.876 17 C 0.070 3.930 18 C -0.533 4.533 19 H 0.049 0.951 20 C 0.010 3.990 21 N -0.926 5.926 22 Si 0.954 3.046 23 H -0.284 1.284 24 H -0.275 1.275 25 H -0.262 1.262 26 H 0.092 0.908 27 H 0.106 0.894 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.052 0.948 31 H 0.087 0.913 32 H 0.073 0.927 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.026 0.974 36 H 0.079 0.921 37 H 0.060 0.940 38 H 0.070 0.930 39 H 0.062 0.938 40 H 0.029 0.971 41 H -0.017 1.017 42 H 0.038 0.962 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.948 17.759 -9.212 20.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.091 4.091 3 N -0.042 5.042 4 N -0.283 5.283 5 C 0.055 3.945 6 H 0.099 0.901 7 C -0.169 4.169 8 C -0.150 4.150 9 C -0.141 4.141 10 C -0.075 4.075 11 C -0.193 4.193 12 C -0.174 4.174 13 C 0.282 3.718 14 O -0.415 6.415 15 C -0.158 4.158 16 H 0.142 0.858 17 C 0.032 3.968 18 C -0.571 4.571 19 H 0.067 0.933 20 C -0.188 4.188 21 N -0.566 5.566 22 Si 0.780 3.220 23 H -0.210 1.210 24 H -0.200 1.200 25 H -0.186 1.186 26 H 0.111 0.889 27 H 0.125 0.875 28 H 0.116 0.884 29 H 0.093 0.907 30 H 0.071 0.929 31 H 0.106 0.894 32 H 0.092 0.908 33 H 0.100 0.900 34 H 0.102 0.898 35 H 0.045 0.955 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.048 0.952 41 H 0.001 0.999 42 H 0.056 0.944 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.178 18.446 -9.061 20.552 hybrid contribution 0.950 -2.300 0.403 2.520 sum 0.771 16.146 -8.658 18.338 Atomic orbital electron populations 1.20487 0.81876 1.05632 1.04833 1.25992 0.98971 0.89492 0.94632 1.74673 0.88106 1.25837 1.15630 1.49860 1.03694 1.05222 1.69555 1.22306 0.86523 0.87945 0.97677 0.90099 1.22809 1.01849 0.96402 0.95864 1.22274 1.00009 0.96402 0.96363 1.22210 1.02280 0.94209 0.95413 1.21484 0.97283 0.95169 0.93582 1.21905 0.98972 1.00205 0.98261 1.21865 0.94127 1.00264 1.01138 1.21725 0.91822 0.83547 0.74740 1.90648 1.32771 1.67283 1.50765 1.21932 0.91691 0.97897 1.04269 0.85830 1.18550 0.97667 0.92231 0.88328 1.21428 1.26518 1.04440 1.04703 0.93285 1.25735 0.96536 1.01642 0.94904 1.70029 1.40566 1.37384 1.08600 0.85665 0.78734 0.79473 0.78177 1.21029 1.19993 1.18627 0.88938 0.87550 0.88402 0.90716 0.92895 0.89414 0.90845 0.90049 0.89761 0.95502 0.90247 0.92103 0.91109 0.91872 0.95206 0.99894 0.94358 0.92591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.55 10.47 71.23 0.75 -0.80 16 2 C 0.10 3.31 6.93 46.83 0.32 3.63 16 3 N -0.24 -7.80 7.71 -40.84 -0.31 -8.12 16 4 N -0.47 -17.50 2.81 -436.06 -1.22 -18.72 16 5 C 0.16 4.95 3.07 46.07 0.14 5.09 16 6 H 0.08 2.86 7.46 -2.39 -0.02 2.84 16 7 C -0.13 -3.55 6.54 31.89 0.21 -3.34 16 8 C -0.11 -2.11 6.83 31.67 0.22 -1.89 16 9 C -0.10 -1.80 6.11 31.32 0.19 -1.61 16 10 C -0.07 -1.77 0.91 -51.46 -0.05 -1.81 16 11 C -0.14 -3.12 8.16 71.98 0.59 -2.53 16 12 C -0.12 -2.79 6.70 71.98 0.48 -2.30 16 13 C 0.49 22.90 7.60 87.94 0.67 23.57 16 14 O -0.54 -29.33 16.82 -3.08 -0.05 -29.38 16 15 C -0.13 -5.72 2.96 -11.74 -0.03 -5.76 16 16 H 0.12 5.06 8.14 -2.39 -0.02 5.04 16 17 C 0.07 3.67 4.49 29.85 0.13 3.80 16 18 C -0.53 -31.39 8.44 25.60 0.22 -31.17 16 19 H 0.05 2.96 7.43 -2.91 -0.02 2.94 16 20 C 0.01 0.60 5.46 84.65 0.46 1.06 16 21 N -0.93 -56.01 13.29 21.45 0.28 -55.73 16 22 Si 0.95 46.56 29.54 68.60 2.03 48.59 16 23 H -0.28 -14.18 7.11 99.48 0.71 -13.47 16 24 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 25 H -0.26 -12.09 7.11 99.48 0.71 -11.38 16 26 H 0.09 2.02 8.14 -2.39 -0.02 2.00 16 27 H 0.11 1.73 8.14 -2.39 -0.02 1.71 16 28 H 0.10 1.93 8.14 -2.38 -0.02 1.91 16 29 H 0.07 2.11 7.88 -2.38 -0.02 2.09 16 30 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.08 1.25 7.67 -2.39 -0.02 1.23 16 34 H 0.08 1.20 7.67 -2.39 -0.02 1.18 16 35 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 37 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.07 1.74 7.00 -2.39 -0.02 1.72 16 39 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.03 0.84 6.59 -2.39 -0.02 0.83 16 41 H -0.02 -1.02 8.12 -2.39 -0.02 -1.04 16 42 H 0.04 1.95 8.12 -2.39 -0.02 1.93 16 43 H 0.27 15.13 8.31 -92.71 -0.77 14.36 16 Total: -1.00 -72.81 341.96 5.99 -66.82 By element: Atomic # 1 Polarization: 9.64 SS G_CDS: 0.97 Total: 10.61 kcal Atomic # 6 Polarization: -18.36 SS G_CDS: 4.30 Total: -14.06 kcal Atomic # 7 Polarization: -81.32 SS G_CDS: -1.25 Total: -82.57 kcal Atomic # 8 Polarization: -29.33 SS G_CDS: -0.05 Total: -29.38 kcal Atomic # 14 Polarization: 46.56 SS G_CDS: 2.03 Total: 48.59 kcal Total: -72.81 5.99 -66.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601944779.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.749 kcal (2) G-P(sol) polarization free energy of solvation -72.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.987 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.069 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds