Wall clock time and date at job start Tue Mar 31 2020 00:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27572 * 126.41690 * 2 1 4 4 N 1.39148 * 113.16336 * 179.97438 * 3 2 1 5 5 C 1.46498 * 124.43668 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47066 * 270.02619 * 5 4 3 7 7 C 1.52999 * 110.05486 * 301.41669 * 6 5 4 8 8 C 1.53876 * 110.03204 * 180.02562 * 6 5 4 9 9 C 1.54263 * 106.63651 * 240.73871 * 8 6 5 10 10 C 1.54883 * 104.19759 * 336.36144 * 9 8 6 11 11 C 1.54367 * 110.07212 * 62.87410 * 6 5 4 12 12 C 1.34949 * 111.12368 * 0.26608 * 4 3 2 13 13 O 1.21301 * 127.50217 * 179.71579 * 12 4 3 14 14 C 1.51434 * 126.41550 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.61266 * 298.55227 * 14 2 1 16 16 C 1.53002 * 110.61023 * 61.36680 * 14 2 1 17 17 C 1.50694 * 109.47435 * 184.99859 * 16 14 2 18 18 H 1.07998 * 120.00219 * 359.97438 * 17 16 14 19 19 C 1.37881 * 119.99893 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99516 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00037 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47225 * 90.00033 * 21 19 17 23 23 H 1.48503 * 109.47234 * 210.00005 * 21 19 17 24 24 H 1.48499 * 109.47310 * 330.00191 * 21 19 17 25 25 H 1.09005 * 109.47256 * 0.02765 * 1 2 3 26 26 H 1.09004 * 109.47534 * 120.02367 * 1 2 3 27 27 H 1.09003 * 109.47533 * 240.02311 * 1 2 3 28 28 H 1.09001 * 109.47277 * 150.02440 * 5 4 3 29 29 H 1.09003 * 109.46915 * 30.02407 * 5 4 3 30 30 H 1.09000 * 109.47073 * 298.58642 * 7 6 5 31 31 H 1.08995 * 109.47259 * 58.57949 * 7 6 5 32 32 H 1.08993 * 109.47201 * 178.58645 * 7 6 5 33 33 H 1.09002 * 110.03428 * 121.42762 * 8 6 5 34 34 H 1.08995 * 110.02995 * 0.04610 * 8 6 5 35 35 H 1.08996 * 110.48639 * 95.04792 * 9 8 6 36 36 H 1.09002 * 110.48477 * 217.68614 * 9 8 6 37 37 H 1.09007 * 110.75595 * 156.25612 * 10 9 8 38 38 H 1.09000 * 110.76099 * 279.63083 * 10 9 8 39 39 H 1.09004 * 110.46303 * 24.17330 * 11 6 5 40 40 H 1.09002 * 110.60677 * 261.60083 * 11 6 5 41 41 H 1.09001 * 109.47305 * 305.00253 * 16 14 2 42 42 H 1.08999 * 109.46963 * 64.99789 * 16 14 2 43 43 H 0.96997 * 119.99406 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 0.0006 5 6 4.7021 1.6937 0.0012 6 6 5.0795 2.0377 -1.4410 7 6 5.5122 0.7734 -2.1860 8 6 6.2178 3.0730 -1.4554 9 6 5.6717 4.3198 -2.1814 10 6 4.5240 3.7723 -3.0656 11 6 3.8806 2.6917 -2.1608 12 6 3.8035 -0.6292 -0.0049 13 8 4.8579 -1.2289 -0.0107 14 6 2.4060 -1.2186 0.0005 15 1 2.2413 -1.8165 0.8970 16 6 2.1734 -2.0600 -1.2560 17 6 2.9882 -3.3249 -1.1716 18 1 3.6100 -3.5101 -0.3083 19 6 2.9405 -4.2454 -2.1971 20 7 3.6512 -5.3495 -2.1231 21 14 1.8655 -3.9248 -3.6906 22 1 2.6499 -3.1925 -4.7172 23 1 1.4004 -5.2183 -4.2526 24 1 0.6915 -3.1087 -3.2896 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5142 -0.8898 27 1 -0.3634 -0.5135 0.8902 28 1 5.5698 1.2799 0.5150 29 1 4.3716 2.5962 0.5155 30 1 6.3902 0.3478 -1.7000 31 1 4.7002 0.0465 -2.1702 32 1 5.7547 1.0250 -3.2184 33 1 7.0781 2.6746 -1.9932 34 1 6.5019 3.3297 -0.4349 35 1 5.2875 5.0426 -1.4618 36 1 6.4475 4.7714 -2.7999 37 1 3.8062 4.5591 -3.2978 38 1 4.9186 3.3262 -3.9785 39 1 3.2068 3.1515 -1.4378 40 1 3.3476 1.9566 -2.7637 41 1 1.1161 -2.3133 -1.3332 42 1 2.4757 -1.4911 -2.1353 43 1 3.6180 -5.9968 -2.8447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601951716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:57 Heat of formation + Delta-G solvation = -3.331644 kcal Electronic energy + Delta-G solvation = -22990.189669 eV Core-core repulsion = 19842.834040 eV Total energy + Delta-G solvation = -3147.355629 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.92556 -38.73779 -36.77093 -34.21705 -32.85972 -31.23345 -30.64293 -28.72878 -28.43046 -26.84187 -25.75037 -23.92711 -21.95794 -20.68433 -20.01920 -19.21522 -18.48275 -16.90557 -16.22863 -15.82435 -15.23138 -15.00408 -14.55195 -14.29862 -13.86049 -13.66186 -13.40698 -13.27932 -13.06086 -12.72463 -12.48997 -12.26063 -12.11863 -11.94256 -11.65199 -11.47876 -11.41349 -11.14411 -11.01985 -10.97450 -10.71666 -10.61464 -10.44410 -10.34758 -10.31696 -10.04471 -9.61720 -9.40811 -8.79163 -8.53067 -8.08893 -6.02518 -4.01201 2.13126 2.84696 3.25325 3.28381 3.35500 3.36201 4.39872 4.42780 4.56708 4.62719 4.71219 4.73194 5.21253 5.26454 5.30089 5.40250 5.41819 5.44157 5.55764 5.65084 5.67824 5.72006 5.73885 5.79985 5.86685 5.89217 5.94189 6.01584 6.02589 6.14991 6.21467 6.24473 6.32113 6.41560 6.45284 6.59399 6.67515 6.87278 6.94704 7.07085 7.67592 8.19169 8.51930 8.57613 9.07569 9.56783 11.10914 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.005982 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.439443 B = 4679.881768 C = 5077.382132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.090 3.910 3 N -0.250 5.250 4 N -0.479 5.479 5 C 0.157 3.843 6 C -0.083 4.083 7 C -0.136 4.136 8 C -0.113 4.113 9 C -0.122 4.122 10 C -0.125 4.125 11 C -0.106 4.106 12 C 0.509 3.491 13 O -0.475 6.475 14 C -0.124 4.124 15 H 0.125 0.875 16 C 0.020 3.980 17 C -0.515 4.515 18 H 0.081 0.919 19 C 0.071 3.929 20 N -0.897 5.897 21 Si 0.872 3.128 22 H -0.278 1.278 23 H -0.286 1.286 24 H -0.265 1.265 25 H 0.075 0.925 26 H 0.087 0.913 27 H 0.085 0.915 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.050 0.950 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.063 0.937 36 H 0.061 0.939 37 H 0.062 0.938 38 H 0.063 0.937 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.035 0.965 42 H 0.012 0.988 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.666 18.461 1.952 18.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.103 4.103 3 N -0.056 5.056 4 N -0.300 5.300 5 C 0.035 3.965 6 C -0.084 4.084 7 C -0.193 4.193 8 C -0.151 4.151 9 C -0.159 4.159 10 C -0.163 4.163 11 C -0.143 4.143 12 C 0.297 3.703 13 O -0.344 6.344 14 C -0.148 4.148 15 H 0.142 0.858 16 C -0.018 4.018 17 C -0.553 4.553 18 H 0.099 0.901 19 C -0.130 4.130 20 N -0.536 5.536 21 Si 0.699 3.301 22 H -0.204 1.204 23 H -0.212 1.212 24 H -0.189 1.189 25 H 0.094 0.906 26 H 0.106 0.894 27 H 0.103 0.897 28 H 0.102 0.898 29 H 0.100 0.900 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.069 0.931 33 H 0.086 0.914 34 H 0.082 0.918 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.081 0.919 38 H 0.082 0.918 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.053 0.947 42 H 0.030 0.970 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -1.752 19.009 1.877 19.182 hybrid contribution -0.296 -0.800 -0.933 1.264 sum -2.048 18.209 0.943 18.349 Atomic orbital electron populations 1.20288 0.85564 1.03467 1.03961 1.25397 0.97210 0.91925 0.95794 1.74458 0.89344 1.26868 1.14953 1.49754 1.02373 1.06380 1.71530 1.21506 0.87483 0.91391 0.96145 1.21660 0.95467 0.95979 0.95286 1.21890 1.02098 0.96144 0.99170 1.22197 0.97509 0.94749 1.00612 1.22327 0.97877 0.97214 0.98496 1.22506 0.97394 0.98119 0.98250 1.22395 0.96500 0.97259 0.98185 1.21283 0.91820 0.81934 0.75302 1.90762 1.30908 1.65692 1.46993 1.21820 0.91364 0.96179 1.05407 0.85795 1.19327 0.98306 0.94848 0.89322 1.21034 1.26413 1.00882 1.06993 0.90066 1.24945 0.95270 0.94972 0.97838 1.69907 1.40801 1.09724 1.33130 0.86917 0.81580 0.77802 0.83821 1.20405 1.21161 1.18939 0.90622 0.89445 0.89670 0.89822 0.89994 0.92274 0.92254 0.93065 0.91392 0.91762 0.91799 0.92006 0.91921 0.91799 0.91002 0.92010 0.94733 0.96972 0.92721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.84 10.46 36.01 0.38 -0.46 16 2 C 0.09 1.42 6.93 -78.73 -0.55 0.88 16 3 N -0.25 -4.08 11.66 35.53 0.41 -3.66 16 4 N -0.48 -8.44 3.02 -59.89 -0.18 -8.62 16 5 C 0.16 2.29 4.84 -4.04 -0.02 2.27 16 6 C -0.08 -1.14 0.74 -153.33 -0.11 -1.26 16 7 C -0.14 -2.29 7.21 37.16 0.27 -2.02 16 8 C -0.11 -1.25 6.11 -25.61 -0.16 -1.40 16 9 C -0.12 -1.19 6.83 -25.08 -0.17 -1.36 16 10 C -0.13 -1.37 6.91 -24.72 -0.17 -1.54 16 11 C -0.11 -1.41 5.35 -25.00 -0.13 -1.54 16 12 C 0.51 10.84 5.89 -10.42 -0.06 10.78 16 13 O -0.47 -11.82 16.21 5.54 0.09 -11.73 16 14 C -0.12 -2.47 2.97 -92.08 -0.27 -2.74 16 15 H 0.12 2.41 8.14 -51.93 -0.42 1.98 16 16 C 0.02 0.47 3.55 -27.88 -0.10 0.38 16 17 C -0.52 -14.68 8.99 -34.44 -0.31 -14.99 16 18 H 0.08 2.58 7.68 -52.49 -0.40 2.18 16 19 C 0.07 2.08 5.47 -17.82 -0.10 1.99 16 20 N -0.90 -27.97 13.96 55.43 0.77 -27.20 16 21 Si 0.87 21.44 27.47 -169.99 -4.67 16.77 16 22 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 25 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.09 0.98 8.03 -51.93 -0.42 0.56 16 27 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.08 1.24 8.04 -51.93 -0.42 0.82 16 29 H 0.08 1.03 8.12 -51.93 -0.42 0.61 16 30 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.22 6.16 -51.93 -0.32 0.90 16 32 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 33 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 34 H 0.06 0.64 7.67 -51.93 -0.40 0.24 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 39 H 0.07 0.96 7.77 -51.93 -0.40 0.56 16 40 H 0.06 0.95 7.85 -51.93 -0.41 0.54 16 41 H 0.03 0.75 7.07 -51.93 -0.37 0.38 16 42 H 0.01 0.29 7.55 -51.93 -0.39 -0.10 16 43 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 LS Contribution 340.51 15.07 5.13 5.13 Total: -1.00 -32.98 340.51 -7.27 -40.25 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -7.32 Total: 0.10 kcal Atomic # 6 Polarization: -9.53 SS G_CDS: -1.51 Total: -11.03 kcal Atomic # 7 Polarization: -40.49 SS G_CDS: 1.01 Total: -39.48 kcal Atomic # 8 Polarization: -11.82 SS G_CDS: 0.09 Total: -11.73 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.67 Total: 16.77 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -32.98 -7.27 -40.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601951716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.915 kcal (2) G-P(sol) polarization free energy of solvation -32.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds