Wall clock time and date at job start Tue Mar 31 2020 00:05:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.27572 * 126.41690 * 2 1 4 4 N 1.39148 * 113.16336 * 179.97438 * 3 2 1 5 5 C 1.46498 * 124.43668 * 180.02562 * 4 3 2 6 6 C 1.53002 * 109.47066 * 270.02619 * 5 4 3 7 7 C 1.52999 * 110.05486 * 301.41669 * 6 5 4 8 8 C 1.53876 * 110.03204 * 180.02562 * 6 5 4 9 9 C 1.54263 * 106.63651 * 240.73871 * 8 6 5 10 10 C 1.54883 * 104.19759 * 336.36144 * 9 8 6 11 11 C 1.54367 * 110.07212 * 62.87410 * 6 5 4 12 12 C 1.34949 * 111.12368 * 0.26608 * 4 3 2 13 13 O 1.21301 * 127.50217 * 179.71579 * 12 4 3 14 14 C 1.51434 * 126.41550 * 179.97438 * 2 1 3 15 15 H 1.09004 * 110.61266 * 298.55227 * 14 2 1 16 16 C 1.53002 * 110.61023 * 61.36680 * 14 2 1 17 17 C 1.50694 * 109.47435 * 184.99859 * 16 14 2 18 18 H 1.07998 * 120.00219 * 359.97438 * 17 16 14 19 19 C 1.37881 * 119.99893 * 180.02562 * 17 16 14 20 20 N 1.31520 * 119.99516 * 180.02562 * 19 17 16 21 21 Si 1.86791 * 120.00037 * 359.97438 * 19 17 16 22 22 H 1.48506 * 109.47225 * 90.00033 * 21 19 17 23 23 H 1.48503 * 109.47234 * 210.00005 * 21 19 17 24 24 H 1.48499 * 109.47310 * 330.00191 * 21 19 17 25 25 H 1.09005 * 109.47256 * 0.02765 * 1 2 3 26 26 H 1.09004 * 109.47534 * 120.02367 * 1 2 3 27 27 H 1.09003 * 109.47533 * 240.02311 * 1 2 3 28 28 H 1.09001 * 109.47277 * 150.02440 * 5 4 3 29 29 H 1.09003 * 109.46915 * 30.02407 * 5 4 3 30 30 H 1.09000 * 109.47073 * 298.58642 * 7 6 5 31 31 H 1.08995 * 109.47259 * 58.57949 * 7 6 5 32 32 H 1.08993 * 109.47201 * 178.58645 * 7 6 5 33 33 H 1.09002 * 110.03428 * 121.42762 * 8 6 5 34 34 H 1.08995 * 110.02995 * 0.04610 * 8 6 5 35 35 H 1.08996 * 110.48639 * 95.04792 * 9 8 6 36 36 H 1.09002 * 110.48477 * 217.68614 * 9 8 6 37 37 H 1.09007 * 110.75595 * 156.25612 * 10 9 8 38 38 H 1.09000 * 110.76099 * 279.63083 * 10 9 8 39 39 H 1.09004 * 110.46303 * 24.17330 * 11 6 5 40 40 H 1.09002 * 110.60677 * 261.60083 * 11 6 5 41 41 H 1.09001 * 109.47305 * 305.00253 * 16 14 2 42 42 H 1.08999 * 109.46963 * 64.99789 * 16 14 2 43 43 H 0.96997 * 119.99406 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2643 1.0266 0.0000 4 7 3.6187 0.7076 0.0006 5 6 4.7021 1.6937 0.0012 6 6 5.0795 2.0377 -1.4410 7 6 5.5122 0.7734 -2.1860 8 6 6.2178 3.0730 -1.4554 9 6 5.6717 4.3198 -2.1814 10 6 4.5240 3.7723 -3.0656 11 6 3.8806 2.6917 -2.1608 12 6 3.8035 -0.6292 -0.0049 13 8 4.8579 -1.2289 -0.0107 14 6 2.4060 -1.2186 0.0005 15 1 2.2413 -1.8165 0.8970 16 6 2.1734 -2.0600 -1.2560 17 6 2.9882 -3.3249 -1.1716 18 1 3.6100 -3.5101 -0.3083 19 6 2.9405 -4.2454 -2.1971 20 7 3.6512 -5.3495 -2.1231 21 14 1.8655 -3.9248 -3.6906 22 1 2.6499 -3.1925 -4.7172 23 1 1.4004 -5.2183 -4.2526 24 1 0.6915 -3.1087 -3.2896 25 1 -0.3634 1.0277 -0.0005 26 1 -0.3634 -0.5142 -0.8898 27 1 -0.3634 -0.5135 0.8902 28 1 5.5698 1.2799 0.5150 29 1 4.3716 2.5962 0.5155 30 1 6.3902 0.3478 -1.7000 31 1 4.7002 0.0465 -2.1702 32 1 5.7547 1.0250 -3.2184 33 1 7.0781 2.6746 -1.9932 34 1 6.5019 3.3297 -0.4349 35 1 5.2875 5.0426 -1.4618 36 1 6.4475 4.7714 -2.7999 37 1 3.8062 4.5591 -3.2978 38 1 4.9186 3.3262 -3.9785 39 1 3.2068 3.1515 -1.4378 40 1 3.3476 1.9566 -2.7637 41 1 1.1161 -2.3133 -1.3332 42 1 2.4757 -1.4911 -2.1353 43 1 3.6180 -5.9968 -2.8447 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601951716.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:05:56 Heat of formation + Delta-G solvation = -24.135437 kcal Electronic energy + Delta-G solvation = -22991.091789 eV Core-core repulsion = 19842.834040 eV Total energy + Delta-G solvation = -3148.257749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.39162 -39.82078 -38.42723 -35.83146 -34.62985 -32.76522 -32.09295 -29.67232 -29.56566 -28.55816 -27.21198 -25.14278 -23.76123 -21.72623 -21.44212 -20.59884 -19.74334 -18.88126 -17.73615 -17.31630 -16.36507 -16.32255 -16.26916 -15.88116 -15.37750 -14.90325 -14.67731 -14.46206 -14.44256 -14.23182 -13.90059 -13.77811 -13.42057 -13.30461 -13.14626 -12.90810 -12.78423 -12.55870 -12.41886 -12.01492 -11.95591 -11.87598 -11.77194 -11.63135 -11.55227 -11.44038 -11.36909 -11.31831 -10.80585 -10.43849 -9.50680 -8.28336 -6.33217 0.72155 1.32596 1.34824 1.45633 1.47683 1.70653 2.33681 2.98661 3.09450 3.28609 3.56896 3.63203 3.67486 3.94208 4.17994 4.21989 4.28536 4.32966 4.40213 4.52819 4.56713 4.59107 4.64508 4.75112 4.79592 4.88394 4.90681 4.94098 5.00025 5.01512 5.10021 5.13672 5.18279 5.21161 5.23026 5.24986 5.38986 5.43173 5.50156 5.51889 5.66591 6.25404 6.73234 6.77592 6.99885 7.28600 8.89340 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017557 B = 0.005982 C = 0.005513 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.439443 B = 4679.881768 C = 5077.382132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.110 3.890 3 N -0.248 5.248 4 N -0.473 5.473 5 C 0.149 3.851 6 C -0.080 4.080 7 C -0.128 4.128 8 C -0.110 4.110 9 C -0.114 4.114 10 C -0.122 4.122 11 C -0.102 4.102 12 C 0.496 3.504 13 O -0.530 6.530 14 C -0.134 4.134 15 H 0.124 0.876 16 C 0.030 3.970 17 C -0.521 4.521 18 H 0.028 0.972 19 C 0.004 3.996 20 N -0.952 5.952 21 Si 0.944 3.056 22 H -0.281 1.281 23 H -0.279 1.279 24 H -0.225 1.225 25 H 0.101 0.899 26 H 0.096 0.904 27 H 0.109 0.891 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.041 0.959 31 H 0.016 0.984 32 H 0.060 0.940 33 H 0.064 0.936 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.057 0.943 39 H 0.077 0.923 40 H 0.034 0.966 41 H 0.063 0.937 42 H 0.004 0.996 43 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.275 21.947 1.272 22.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.082 4.082 3 N -0.055 5.055 4 N -0.292 5.292 5 C 0.028 3.972 6 C -0.081 4.081 7 C -0.186 4.186 8 C -0.148 4.148 9 C -0.151 4.151 10 C -0.159 4.159 11 C -0.139 4.139 12 C 0.284 3.716 13 O -0.403 6.403 14 C -0.158 4.158 15 H 0.141 0.859 16 C -0.008 4.008 17 C -0.559 4.559 18 H 0.046 0.954 19 C -0.192 4.192 20 N -0.593 5.593 21 Si 0.766 3.234 22 H -0.207 1.207 23 H -0.205 1.205 24 H -0.147 1.147 25 H 0.120 0.880 26 H 0.115 0.885 27 H 0.127 0.873 28 H 0.093 0.907 29 H 0.130 0.870 30 H 0.060 0.940 31 H 0.035 0.965 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.095 0.905 37 H 0.098 0.902 38 H 0.076 0.924 39 H 0.095 0.905 40 H 0.053 0.947 41 H 0.081 0.919 42 H 0.022 0.978 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -4.399 22.559 1.219 23.017 hybrid contribution 0.579 -1.928 -0.635 2.111 sum -3.821 20.631 0.584 20.990 Atomic orbital electron populations 1.20582 0.81528 1.05731 1.05463 1.25976 0.98988 0.89059 0.94218 1.74542 0.88322 1.26491 1.16095 1.49847 1.03717 1.05561 1.70069 1.21809 0.86642 0.91594 0.97163 1.21656 0.97119 0.95168 0.94125 1.21809 0.99725 0.96800 1.00235 1.22187 0.96156 0.94463 1.01962 1.22315 0.97671 0.96551 0.98559 1.22500 0.98070 0.97672 0.97680 1.22330 0.96023 0.97262 0.98301 1.21574 0.91687 0.83412 0.74925 1.90718 1.32705 1.67132 1.49766 1.21788 0.92218 0.97803 1.03974 0.85866 1.19151 0.98551 0.92590 0.90554 1.21261 1.26094 1.03238 1.05296 0.95399 1.25996 0.97051 0.94462 1.01708 1.70091 1.43250 1.11260 1.34655 0.85767 0.80547 0.78414 0.78631 1.20709 1.20498 1.14701 0.88025 0.88538 0.87296 0.90682 0.86992 0.94008 0.96519 0.92082 0.91711 0.90154 0.90190 0.90515 0.90228 0.92425 0.90476 0.94705 0.91883 0.97799 0.92594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.35 10.46 71.24 0.75 -0.61 16 2 C 0.11 3.24 6.93 46.83 0.32 3.56 16 3 N -0.25 -7.63 11.66 -40.85 -0.48 -8.10 16 4 N -0.47 -16.65 3.02 -461.66 -1.39 -18.04 16 5 C 0.15 4.27 4.84 86.38 0.42 4.68 16 6 C -0.08 -2.14 0.74 -51.42 -0.04 -2.18 16 7 C -0.13 -4.53 7.21 71.98 0.52 -4.01 16 8 C -0.11 -2.20 6.11 31.32 0.19 -2.01 16 9 C -0.11 -1.82 6.83 31.67 0.22 -1.61 16 10 C -0.12 -2.33 6.91 31.90 0.22 -2.11 16 11 C -0.10 -2.53 5.35 31.72 0.17 -2.36 16 12 C 0.50 22.03 5.89 87.94 0.52 22.55 16 13 O -0.53 -28.48 16.21 -3.10 -0.05 -28.53 16 14 C -0.13 -5.37 2.97 -11.74 -0.03 -5.40 16 15 H 0.12 4.90 8.14 -2.39 -0.02 4.88 16 16 C 0.03 1.39 3.55 29.85 0.11 1.49 16 17 C -0.52 -30.98 8.99 25.60 0.23 -30.75 16 18 H 0.03 1.90 7.68 -2.91 -0.02 1.88 16 19 C 0.00 0.26 5.47 84.65 0.46 0.72 16 20 N -0.95 -62.07 13.96 21.45 0.30 -61.77 16 21 Si 0.94 44.17 27.47 68.60 1.88 46.06 16 22 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 23 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 24 H -0.22 -9.00 6.54 99.48 0.65 -8.35 16 25 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 26 H 0.10 1.67 8.03 -2.38 -0.02 1.65 16 27 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 28 H 0.07 2.28 8.04 -2.39 -0.02 2.26 16 29 H 0.11 2.55 8.12 -2.39 -0.02 2.53 16 30 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.02 0.70 6.16 -2.39 -0.01 0.68 16 32 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.06 1.35 7.67 -2.39 -0.02 1.34 16 34 H 0.08 1.37 7.67 -2.39 -0.02 1.36 16 35 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 39 H 0.08 1.84 7.77 -2.38 -0.02 1.83 16 40 H 0.03 1.04 7.85 -2.39 -0.02 1.03 16 41 H 0.06 2.57 7.07 -2.39 -0.02 2.55 16 42 H 0.00 0.18 7.55 -2.39 -0.02 0.16 16 43 H 0.27 16.08 8.31 -92.71 -0.77 15.31 16 Total: -1.00 -78.23 340.51 5.23 -73.00 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.92 Total: 15.42 kcal Atomic # 6 Polarization: -22.08 SS G_CDS: 4.05 Total: -18.03 kcal Atomic # 7 Polarization: -86.34 SS G_CDS: -1.57 Total: -87.91 kcal Atomic # 8 Polarization: -28.48 SS G_CDS: -0.05 Total: -28.53 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.06 kcal Total: -78.23 5.23 -73.00 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601951716.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.864 kcal (2) G-P(sol) polarization free energy of solvation -78.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.999 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds