Wall clock time and date at job start Tue Mar 31 2020 00:34:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47197 * 179.97438 * 60.26448 * 3 2 1 5 5 C 1.52992 * 109.47659 * 33.28044 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 H 1.08006 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46883 * 60.00256 * 18 16 14 20 20 H 1.48500 * 109.47172 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47020 * 300.00160 * 18 16 14 22 22 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 23 23 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 24 24 H 1.08996 * 109.47766 * 86.45775 * 1 2 3 25 25 H 1.09002 * 109.47120 * 206.45729 * 1 2 3 26 26 H 1.08998 * 109.47197 * 326.45137 * 1 2 3 27 27 H 1.09002 * 109.47178 * 273.27703 * 4 3 2 28 28 H 1.09001 * 109.46629 * 153.28003 * 4 3 2 29 29 H 1.09002 * 109.47103 * 59.99614 * 5 4 3 30 30 H 1.08998 * 109.46862 * 300.00426 * 5 4 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 33 33 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 34 34 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 35 35 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 36 36 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 37 37 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 38 38 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 39 39 H 0.96998 * 120.00461 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.49120 * 303.14081 * 22 12 11 41 41 H 1.09003 * 109.48945 * 183.06528 * 22 12 11 42 42 H 1.09003 * 109.63301 * 350.89825 * 23 9 7 43 43 H 1.09003 * 109.62726 * 111.48107 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0009 -0.0006 5 6 4.6280 -1.2048 -0.7923 6 6 6.1580 -1.2041 -0.7934 7 6 6.6604 -2.3921 -1.5727 8 8 5.8723 -3.1632 -2.0779 9 7 7.9855 -2.5971 -1.7091 10 6 8.9583 -1.6705 -1.1106 11 6 9.9646 -2.4923 -0.2895 12 7 10.5466 -3.5375 -1.1422 13 6 11.6393 -4.2337 -0.4499 14 6 12.7785 -3.2748 -0.2176 15 1 12.6985 -2.2505 -0.5505 16 6 13.9222 -3.7049 0.4209 17 7 14.0195 -4.9520 0.8267 18 14 15.3340 -2.5161 0.7095 19 1 14.8628 -1.3812 1.5434 20 1 16.4382 -3.2196 1.4103 21 1 15.8230 -2.0022 -0.5952 22 6 9.5216 -4.4868 -1.5961 23 6 8.4970 -3.7498 -2.4659 24 1 -0.3634 0.0635 -1.0256 25 1 -0.3633 -0.9200 0.4579 26 1 -0.3633 0.8564 0.5679 27 1 4.4817 -0.0578 1.0253 28 1 4.4808 0.9189 -0.4628 29 1 4.2643 -1.1462 -1.8181 30 1 4.2651 -2.1228 -0.3301 31 1 6.5221 -1.2625 0.2324 32 1 6.5205 -0.2861 -1.2558 33 1 9.4803 -1.1282 -1.8988 34 1 8.4404 -0.9666 -0.4591 35 1 9.4566 -2.9545 0.5569 36 1 10.7562 -1.8373 0.0744 37 1 11.2808 -4.6108 0.5078 38 1 11.9848 -5.0668 -1.0620 39 1 14.8243 -5.2547 1.2756 40 1 9.0197 -4.9212 -0.7315 41 1 9.9918 -5.2782 -2.1798 42 1 7.6741 -4.4213 -2.7110 43 1 8.9757 -3.4032 -3.3818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602204123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:49 Heat of formation + Delta-G solvation = 2.204790 kcal Electronic energy + Delta-G solvation = -20974.929960 eV Core-core repulsion = 17827.814409 eV Total energy + Delta-G solvation = -3147.115551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.02353 -37.63677 -35.85188 -34.40415 -33.50074 -32.44721 -31.00534 -29.72792 -28.25384 -26.77759 -25.33823 -23.38378 -22.61235 -21.69698 -20.38792 -18.62487 -17.26683 -16.55330 -16.40427 -16.09834 -15.55363 -14.88796 -14.74670 -14.43838 -14.14070 -13.97092 -13.94188 -13.78994 -13.65290 -13.32631 -13.06860 -12.58260 -12.36024 -12.25984 -11.92143 -11.61954 -11.30625 -11.11450 -11.04136 -10.97027 -10.77396 -10.63314 -10.56254 -9.97559 -9.91591 -9.88409 -9.61235 -9.31792 -8.52373 -8.43586 -7.35520 -6.08461 -4.10904 2.49158 2.53629 2.73406 3.14286 3.28944 3.33936 3.35950 4.02064 4.36344 4.51993 4.75156 4.82511 4.85179 5.12793 5.20069 5.24575 5.27079 5.31355 5.35328 5.36795 5.38145 5.43223 5.46748 5.53932 5.63549 5.72071 5.76721 5.88421 5.95763 6.02476 6.12301 6.26862 6.42742 6.44246 6.68208 7.19512 7.25267 7.47157 7.56104 7.71450 7.98968 8.09515 8.28308 8.44607 8.95881 9.53657 11.02230 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030550 B = 0.002771 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.303767 B =10100.926985 C =10664.499589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 C -0.201 4.201 3 C -0.181 4.181 4 C -0.008 4.008 5 C -0.098 4.098 6 C -0.141 4.141 7 C 0.512 3.488 8 O -0.553 6.553 9 N -0.609 5.609 10 C 0.108 3.892 11 C 0.049 3.951 12 N -0.536 5.536 13 C 0.193 3.807 14 C -0.511 4.511 15 H 0.063 0.937 16 C 0.056 3.944 17 N -0.897 5.897 18 Si 0.899 3.101 19 H -0.277 1.277 20 H -0.288 1.288 21 H -0.276 1.276 22 C 0.041 3.959 23 C 0.117 3.883 24 H 0.078 0.922 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.025 0.975 36 H 0.097 0.903 37 H -0.009 1.009 38 H 0.032 0.968 39 H 0.262 0.738 40 H 0.026 0.974 41 H 0.081 0.919 42 H 0.087 0.913 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.006 10.027 -1.818 21.565 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.201 4.201 3 C -0.182 4.182 4 C -0.044 4.044 5 C -0.136 4.136 6 C -0.180 4.180 7 C 0.301 3.699 8 O -0.431 6.431 9 N -0.343 5.343 10 C -0.015 4.015 11 C -0.080 4.080 12 N -0.261 5.261 13 C 0.069 3.931 14 C -0.549 4.549 15 H 0.082 0.918 16 C -0.146 4.146 17 N -0.536 5.536 18 Si 0.727 3.273 19 H -0.203 1.203 20 H -0.214 1.214 21 H -0.201 1.201 22 C -0.088 4.088 23 C -0.005 4.005 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.043 0.957 36 H 0.115 0.885 37 H 0.009 0.991 38 H 0.050 0.950 39 H 0.072 0.928 40 H 0.044 0.956 41 H 0.099 0.901 42 H 0.105 0.895 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -19.085 9.702 -2.404 21.544 hybrid contribution 0.705 0.115 1.004 1.232 sum -18.380 9.817 -1.400 20.885 Atomic orbital electron populations 1.18828 0.84793 1.02892 1.02931 1.22411 0.93983 1.01755 1.01989 1.22353 0.93672 1.01102 1.01025 1.18725 0.84415 0.99550 1.01750 1.21273 0.93085 0.97807 1.01408 1.21699 0.97062 0.97605 1.01671 1.20624 0.81819 0.86878 0.80604 1.90667 1.54912 1.47852 1.49696 1.48271 1.05368 1.27341 1.53272 1.22122 0.90092 0.91744 0.97504 1.22420 0.96621 0.95621 0.93326 1.62078 1.09216 1.13346 1.41458 1.19726 0.87405 0.94200 0.91811 1.21090 0.99657 0.97135 1.37035 0.91850 1.25001 0.98616 0.95300 0.95690 1.69945 1.28385 1.15468 1.39849 0.86544 0.81575 0.80791 0.78383 1.20263 1.21374 1.20130 1.22412 0.93070 0.95262 0.98092 1.21749 0.96715 0.87589 0.94453 0.90308 0.90289 0.90377 0.89472 0.89516 0.90876 0.90853 0.88609 0.88666 0.90547 0.90064 0.95674 0.88464 0.99110 0.95016 0.92790 0.95577 0.90096 0.89483 0.91009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.25 10.32 34.37 0.35 0.10 16 2 C -0.20 -2.12 14.13 -37.12 -0.52 -2.64 16 3 C -0.18 -1.99 13.34 -37.12 -0.50 -2.48 16 4 C -0.01 -0.07 5.70 -29.52 -0.17 -0.24 16 5 C -0.10 -1.01 4.46 -26.74 -0.12 -1.13 16 6 C -0.14 -1.40 4.06 -27.88 -0.11 -1.51 16 7 C 0.51 7.37 7.71 -10.98 -0.08 7.29 16 8 O -0.55 -9.81 15.43 5.56 0.09 -9.72 16 9 N -0.61 -8.96 3.00 -172.16 -0.52 -9.48 16 10 C 0.11 1.46 6.53 -3.37 -0.02 1.43 16 11 C 0.05 0.87 5.47 -3.46 -0.02 0.85 16 12 N -0.54 -10.97 4.62 -235.44 -1.09 -12.06 16 13 C 0.19 4.87 4.72 -4.98 -0.02 4.85 16 14 C -0.51 -13.73 8.41 -34.44 -0.29 -14.02 16 15 H 0.06 1.66 7.13 -52.48 -0.37 1.28 16 16 C 0.06 1.53 5.46 -17.82 -0.10 1.43 16 17 N -0.90 -26.10 13.29 55.43 0.74 -25.37 16 18 Si 0.90 20.95 29.54 -169.99 -5.02 15.93 16 19 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 20 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 21 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 22 C 0.04 0.73 5.62 -3.68 -0.02 0.71 16 23 C 0.12 1.83 6.60 -3.58 -0.02 1.81 16 24 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 25 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.84 8.10 -51.93 -0.42 0.42 16 30 H 0.07 0.87 8.10 -51.93 -0.42 0.45 16 31 H 0.10 0.82 7.67 -51.93 -0.40 0.42 16 32 H 0.10 0.75 7.99 -51.93 -0.41 0.33 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.08 0.82 6.02 -51.93 -0.31 0.51 16 35 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.10 1.81 6.67 -51.93 -0.35 1.46 16 37 H -0.01 -0.24 8.12 -51.93 -0.42 -0.67 16 38 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 39 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 40 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 41 H 0.08 1.41 7.99 -51.93 -0.41 0.99 16 42 H 0.09 1.36 7.06 -51.93 -0.37 1.00 16 43 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 354.15 15.07 5.34 5.34 Total: -1.00 -32.40 354.15 -9.36 -41.75 By element: Atomic # 1 Polarization: 4.40 SS G_CDS: -7.24 Total: -2.84 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -1.65 Total: -3.55 kcal Atomic # 7 Polarization: -46.04 SS G_CDS: -0.87 Total: -46.90 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.02 Total: 15.93 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.40 -9.36 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.958 kcal (2) G-P(sol) polarization free energy of solvation -32.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.562 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds