Wall clock time and date at job start Tue Mar 31 2020 00:34:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.47201 * 1 3 3 C 1.17399 * 179.97438 * 2 1 4 4 C 1.47197 * 179.97438 * 60.26448 * 3 2 1 5 5 C 1.52992 * 109.47659 * 33.28044 * 4 3 2 6 6 C 1.52997 * 109.47482 * 179.97438 * 5 4 3 7 7 C 1.50701 * 109.47212 * 179.97438 * 6 5 4 8 8 O 1.21280 * 119.99781 * 0.02562 * 7 6 5 9 9 N 1.34780 * 119.99795 * 179.97438 * 7 6 5 10 10 C 1.47074 * 120.88261 * 359.72571 * 9 7 6 11 11 C 1.53695 * 108.27576 * 128.74910 * 10 9 7 12 12 N 1.46904 * 109.25420 * 54.08473 * 11 10 9 13 13 C 1.46897 * 110.99901 * 172.60509 * 12 11 10 14 14 C 1.50703 * 109.47428 * 294.29982 * 13 12 11 15 15 H 1.08006 * 119.99872 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00179 * 179.97438 * 14 13 12 17 17 N 1.31512 * 120.00343 * 0.02562 * 16 14 13 18 18 Si 1.86806 * 120.00028 * 180.02562 * 16 14 13 19 19 H 1.48500 * 109.46883 * 60.00256 * 18 16 14 20 20 H 1.48500 * 109.47172 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47020 * 300.00160 * 18 16 14 22 22 C 1.46897 * 111.26792 * 296.75440 * 12 11 10 23 23 C 1.47075 * 120.87669 * 180.02562 * 9 7 6 24 24 H 1.08996 * 109.47766 * 86.45775 * 1 2 3 25 25 H 1.09002 * 109.47120 * 206.45729 * 1 2 3 26 26 H 1.08998 * 109.47197 * 326.45137 * 1 2 3 27 27 H 1.09002 * 109.47178 * 273.27703 * 4 3 2 28 28 H 1.09001 * 109.46629 * 153.28003 * 4 3 2 29 29 H 1.09002 * 109.47103 * 59.99614 * 5 4 3 30 30 H 1.08998 * 109.46862 * 300.00426 * 5 4 3 31 31 H 1.09002 * 109.47153 * 59.99783 * 6 5 4 32 32 H 1.09001 * 109.46832 * 299.99974 * 6 5 4 33 33 H 1.08994 * 109.63016 * 248.52290 * 10 9 7 34 34 H 1.09001 * 109.62513 * 9.10199 * 10 9 7 35 35 H 1.08997 * 109.65385 * 294.08176 * 11 10 9 36 36 H 1.08999 * 109.42153 * 173.94686 * 11 10 9 37 37 H 1.08994 * 109.47420 * 54.30050 * 13 12 11 38 38 H 1.08997 * 109.47407 * 174.29955 * 13 12 11 39 39 H 0.96998 * 120.00461 * 179.97438 * 17 16 14 40 40 H 1.09001 * 109.49120 * 303.14081 * 22 12 11 41 41 H 1.09003 * 109.48945 * 183.06528 * 22 12 11 42 42 H 1.09003 * 109.63301 * 350.89825 * 23 9 7 43 43 H 1.09003 * 109.62726 * 111.48107 * 23 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.4720 0.0000 0.0000 3 6 2.6460 0.0005 0.0000 4 6 4.1180 0.0009 -0.0006 5 6 4.6280 -1.2048 -0.7923 6 6 6.1580 -1.2041 -0.7934 7 6 6.6604 -2.3921 -1.5727 8 8 5.8723 -3.1632 -2.0779 9 7 7.9855 -2.5971 -1.7091 10 6 8.9583 -1.6705 -1.1106 11 6 9.9646 -2.4923 -0.2895 12 7 10.5466 -3.5375 -1.1422 13 6 11.6393 -4.2337 -0.4499 14 6 12.7785 -3.2748 -0.2176 15 1 12.6985 -2.2505 -0.5505 16 6 13.9222 -3.7049 0.4209 17 7 14.0195 -4.9520 0.8267 18 14 15.3340 -2.5161 0.7095 19 1 14.8628 -1.3812 1.5434 20 1 16.4382 -3.2196 1.4103 21 1 15.8230 -2.0022 -0.5952 22 6 9.5216 -4.4868 -1.5961 23 6 8.4970 -3.7498 -2.4659 24 1 -0.3634 0.0635 -1.0256 25 1 -0.3633 -0.9200 0.4579 26 1 -0.3633 0.8564 0.5679 27 1 4.4817 -0.0578 1.0253 28 1 4.4808 0.9189 -0.4628 29 1 4.2643 -1.1462 -1.8181 30 1 4.2651 -2.1228 -0.3301 31 1 6.5221 -1.2625 0.2324 32 1 6.5205 -0.2861 -1.2558 33 1 9.4803 -1.1282 -1.8988 34 1 8.4404 -0.9666 -0.4591 35 1 9.4566 -2.9545 0.5569 36 1 10.7562 -1.8373 0.0744 37 1 11.2808 -4.6108 0.5078 38 1 11.9848 -5.0668 -1.0620 39 1 14.8243 -5.2547 1.2756 40 1 9.0197 -4.9212 -0.7315 41 1 9.9918 -5.2782 -2.1798 42 1 7.6741 -4.4213 -2.7110 43 1 8.9757 -3.4032 -3.3818 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602204123.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:48 Heat of formation + Delta-G solvation = -17.919337 kcal Electronic energy + Delta-G solvation = -20975.802608 eV Core-core repulsion = 17827.814409 eV Total energy + Delta-G solvation = -3147.988199 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.21971 -39.04647 -36.63996 -35.94812 -34.45804 -34.16563 -32.26961 -30.60509 -29.82813 -27.80220 -26.79075 -24.68308 -24.03837 -23.03438 -21.70609 -19.80587 -18.48122 -18.32340 -17.45813 -17.00908 -16.66111 -16.63479 -16.00962 -15.82352 -15.44919 -15.29624 -14.88068 -14.66374 -14.56309 -14.24487 -14.16471 -14.00422 -13.59876 -13.32913 -13.15600 -12.97811 -12.76873 -12.59204 -12.51667 -12.34764 -12.20182 -12.10814 -11.85534 -11.74844 -11.29443 -10.85287 -10.62605 -10.60093 -10.56323 -9.74671 -9.05641 -8.19061 -6.29813 1.44754 1.47900 1.55547 1.62818 1.71641 1.79202 2.03484 2.42191 3.13351 3.23855 3.36604 3.55523 3.96335 4.04147 4.07553 4.12191 4.23507 4.29595 4.43462 4.46289 4.57105 4.64600 4.71198 4.74352 4.76267 4.81399 4.84577 4.86490 4.89981 4.96073 5.04028 5.15431 5.20492 5.21255 5.23856 5.32418 5.48477 5.64560 6.02860 6.24538 6.46976 6.56427 6.74183 6.86059 7.15678 7.40307 8.92036 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030550 B = 0.002771 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.303767 B =10100.926985 C =10664.499589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.003 4.003 5 C -0.090 4.090 6 C -0.132 4.132 7 C 0.508 3.492 8 O -0.592 6.592 9 N -0.614 5.614 10 C 0.119 3.881 11 C 0.046 3.954 12 N -0.539 5.539 13 C 0.207 3.793 14 C -0.521 4.521 15 H 0.072 0.928 16 C -0.002 4.002 17 N -0.937 5.937 18 Si 0.972 3.028 19 H -0.263 1.263 20 H -0.289 1.289 21 H -0.268 1.268 22 C 0.044 3.956 23 C 0.126 3.874 24 H 0.089 0.911 25 H 0.088 0.912 26 H 0.094 0.906 27 H 0.103 0.897 28 H 0.109 0.891 29 H 0.055 0.945 30 H 0.049 0.951 31 H 0.119 0.881 32 H 0.130 0.870 33 H 0.087 0.913 34 H 0.126 0.874 35 H 0.015 0.985 36 H 0.088 0.912 37 H -0.042 1.042 38 H 0.002 0.998 39 H 0.263 0.737 40 H 0.013 0.987 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.388 13.072 -1.699 23.445 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.220 4.220 3 C -0.215 4.215 4 C -0.039 4.039 5 C -0.129 4.129 6 C -0.171 4.171 7 C 0.298 3.702 8 O -0.474 6.474 9 N -0.346 5.346 10 C -0.003 4.003 11 C -0.083 4.083 12 N -0.264 5.264 13 C 0.081 3.919 14 C -0.559 4.559 15 H 0.090 0.910 16 C -0.199 4.199 17 N -0.578 5.578 18 Si 0.797 3.203 19 H -0.187 1.187 20 H -0.215 1.215 21 H -0.193 1.193 22 C -0.085 4.085 23 C 0.003 3.997 24 H 0.108 0.892 25 H 0.106 0.894 26 H 0.113 0.887 27 H 0.122 0.878 28 H 0.127 0.873 29 H 0.074 0.926 30 H 0.067 0.933 31 H 0.137 0.863 32 H 0.147 0.853 33 H 0.105 0.895 34 H 0.144 0.856 35 H 0.034 0.966 36 H 0.106 0.894 37 H -0.024 1.024 38 H 0.020 0.980 39 H 0.072 0.928 40 H 0.031 0.969 41 H 0.096 0.904 42 H 0.103 0.897 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -19.488 12.777 -2.290 23.416 hybrid contribution 0.740 -0.901 0.956 1.508 sum -18.749 11.876 -1.334 22.234 Atomic orbital electron populations 1.19050 0.82716 1.04083 1.04052 1.23420 0.95477 1.01376 1.01703 1.23104 0.94939 1.01772 1.01647 1.18791 0.83194 0.99398 1.02534 1.21149 0.93532 0.97707 1.00467 1.21767 0.96411 0.96621 1.02345 1.21450 0.81099 0.87560 0.80057 1.90656 1.55757 1.49576 1.51363 1.48385 1.05986 1.27128 1.53146 1.22174 0.89160 0.91060 0.97887 1.22512 0.97312 0.94871 0.93571 1.62016 1.09387 1.13781 1.41201 1.19381 0.88954 0.93561 0.89993 1.21422 1.00119 0.97612 1.36720 0.91011 1.25973 1.01602 0.97022 0.95346 1.70094 1.29241 1.17617 1.40812 0.85386 0.77746 0.78573 0.78607 1.18723 1.21466 1.19264 1.22425 0.92916 0.95267 0.97914 1.21561 0.95778 0.88107 0.94269 0.89207 0.89372 0.88718 0.87841 0.87316 0.92597 0.93252 0.86310 0.85250 0.89477 0.85602 0.96649 0.89357 1.02390 0.97958 0.92786 0.96894 0.90386 0.89711 0.90097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.04 -0.51 10.32 70.18 0.72 0.22 16 2 C -0.22 -4.42 14.13 31.13 0.44 -3.98 16 3 C -0.21 -4.46 13.34 31.12 0.42 -4.05 16 4 C 0.00 -0.04 5.70 28.79 0.16 0.12 16 5 C -0.09 -1.72 4.46 30.59 0.14 -1.58 16 6 C -0.13 -2.17 4.06 29.85 0.12 -2.05 16 7 C 0.51 13.62 7.71 87.66 0.68 14.29 16 8 O -0.59 -20.78 15.43 -3.03 -0.05 -20.82 16 9 N -0.61 -16.79 3.00 -816.99 -2.45 -19.24 16 10 C 0.12 2.82 6.53 86.50 0.57 3.38 16 11 C 0.05 1.57 5.47 86.54 0.47 2.05 16 12 N -0.54 -22.23 4.62 -898.81 -4.15 -26.38 16 13 C 0.21 10.82 4.72 85.56 0.40 11.23 16 14 C -0.52 -28.19 8.41 25.60 0.22 -27.98 16 15 H 0.07 3.69 7.13 -2.91 -0.02 3.67 16 16 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 17 N -0.94 -55.72 13.29 21.44 0.28 -55.43 16 18 Si 0.97 42.62 29.54 68.60 2.03 44.65 16 19 H -0.26 -10.83 7.11 99.48 0.71 -10.13 16 20 H -0.29 -12.61 7.11 99.48 0.71 -11.91 16 21 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 22 C 0.04 1.60 5.62 86.40 0.49 2.09 16 23 C 0.13 3.85 6.60 86.36 0.57 4.42 16 24 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.24 8.10 -2.39 -0.02 1.22 16 30 H 0.05 1.16 8.10 -2.39 -0.02 1.14 16 31 H 0.12 1.49 7.67 -2.39 -0.02 1.47 16 32 H 0.13 1.33 7.99 -2.39 -0.02 1.31 16 33 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.13 1.89 6.02 -2.39 -0.01 1.88 16 35 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 36 H 0.09 3.17 6.67 -2.39 -0.02 3.16 16 37 H -0.04 -2.39 8.12 -2.39 -0.02 -2.41 16 38 H 0.00 0.13 7.97 -2.39 -0.02 0.11 16 39 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.08 2.83 7.99 -2.39 -0.02 2.81 16 42 H 0.08 2.66 7.06 -2.39 -0.02 2.64 16 43 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -72.86 354.15 2.49 -70.37 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 0.97 Total: 8.33 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: 5.85 Total: -1.46 kcal Atomic # 7 Polarization: -94.74 SS G_CDS: -6.32 Total: -101.06 kcal Atomic # 8 Polarization: -20.78 SS G_CDS: -0.05 Total: -20.82 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -72.86 2.49 -70.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602204123.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.450 kcal (2) G-P(sol) polarization free energy of solvation -72.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds