Wall clock time and date at job start Tue Mar 31 2020 00:54:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53005 * 109.46820 * 2 1 4 4 C 1.52998 * 109.47110 * 240.00348 * 2 1 3 5 5 C 1.52996 * 109.47227 * 120.00272 * 2 1 3 6 6 N 1.46897 * 109.47426 * 77.76023 * 5 2 1 7 7 C 1.46905 * 110.99743 * 316.59315 * 6 5 2 8 8 C 1.50694 * 109.47016 * 293.93004 * 7 6 5 9 9 H 1.08008 * 120.00312 * 2.13894 * 8 7 6 10 10 C 1.37876 * 119.99996 * 182.13899 * 8 7 6 11 11 N 1.31517 * 120.00031 * 0.02562 * 10 8 7 12 12 Si 1.86808 * 120.00251 * 180.02562 * 10 8 7 13 13 H 1.48496 * 109.46867 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.46878 * 119.99724 * 12 10 8 15 15 H 1.48503 * 109.46923 * 240.00313 * 12 10 8 16 16 C 1.46897 * 110.99901 * 80.54815 * 6 5 2 17 17 C 1.50694 * 109.47400 * 66.34567 * 16 6 5 18 18 C 1.38828 * 120.35832 * 263.79303 * 17 16 6 19 19 C 1.38370 * 118.48872 * 180.02562 * 18 17 16 20 20 C 1.38924 * 119.11389 * 359.97438 * 19 18 17 21 21 O 1.35670 * 119.68909 * 180.02562 * 20 19 18 22 22 N 1.32252 * 120.62362 * 0.02562 * 20 19 18 23 23 C 1.31963 * 121.65250 * 359.97438 * 22 20 19 24 24 H 1.09004 * 109.46914 * 262.21551 * 1 2 3 25 25 H 1.08996 * 109.47560 * 22.21762 * 1 2 3 26 26 H 1.08999 * 109.47480 * 142.21853 * 1 2 3 27 27 H 1.08997 * 109.46832 * 180.02562 * 3 2 1 28 28 H 1.08999 * 109.47131 * 300.00109 * 3 2 1 29 29 H 1.09001 * 109.46847 * 60.00554 * 3 2 1 30 30 H 1.09008 * 109.47100 * 303.26874 * 4 2 1 31 31 H 1.09002 * 109.47321 * 63.26087 * 4 2 1 32 32 H 1.08999 * 109.47356 * 183.26632 * 4 2 1 33 33 H 1.09001 * 109.46836 * 317.75902 * 5 2 1 34 34 H 1.09005 * 109.47087 * 197.75896 * 5 2 1 35 35 H 1.08995 * 109.46974 * 53.93270 * 7 6 5 36 36 H 1.09002 * 109.46643 * 173.92972 * 7 6 5 37 37 H 0.96996 * 120.00196 * 179.97438 * 11 10 8 38 38 H 1.08997 * 109.47161 * 306.34269 * 16 6 5 39 39 H 1.09002 * 109.47360 * 186.35080 * 16 6 5 40 40 H 1.08002 * 120.75176 * 0.04674 * 18 17 16 41 41 H 1.07998 * 120.44596 * 179.97438 * 19 18 17 42 42 H 0.96698 * 113.99741 * 269.97558 * 21 20 19 43 43 H 1.07995 * 119.58110 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0400 -0.7213 1.2492 6 7 1.9264 -2.1732 1.0570 7 6 0.6379 -2.5240 0.4450 8 6 -0.4784 -2.2014 1.4046 9 1 -0.2559 -1.7463 2.3585 10 6 -1.7837 -2.4874 1.0649 11 7 -2.0546 -3.0421 -0.0964 12 14 -3.1675 -2.0869 2.2542 13 1 -2.6025 -1.4717 3.4819 14 1 -4.1109 -1.1357 1.6135 15 1 -3.8891 -3.3345 2.6121 16 6 3.0464 -2.6876 0.2576 17 6 4.3293 -2.5343 1.0332 18 6 5.1501 -1.4349 0.8214 19 6 6.3193 -1.3332 1.5544 20 6 6.6303 -2.3285 2.4724 21 8 7.7735 -2.2403 3.1976 22 7 5.8226 -3.3612 2.6459 23 6 4.7010 -3.4857 1.9618 24 1 -0.3633 -0.1392 1.0182 25 1 -0.3634 0.9513 -0.3886 26 1 -0.3634 -0.8122 -0.6296 27 1 3.1299 1.4426 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6766 1.9563 0.8901 30 1 1.6296 -1.7306 -1.2791 31 1 1.7252 -0.1747 -2.1383 32 1 3.1284 -0.7722 -1.2205 33 1 1.4438 -0.4211 2.1109 34 1 3.0839 -0.4580 1.4200 35 1 0.5042 -1.9522 -0.4733 36 1 0.6230 -3.5894 0.2151 37 1 -2.9728 -3.2436 -0.3352 38 1 3.1158 -2.1262 -0.6741 39 1 2.8800 -3.7416 0.0350 40 1 4.8819 -0.6760 0.1012 41 1 6.9813 -0.4914 1.4148 42 1 8.5379 -2.6596 2.7794 43 1 4.0658 -4.3427 2.1307 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602464563.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:54:58 Heat of formation + Delta-G solvation = 40.097372 kcal Electronic energy + Delta-G solvation = -22930.964507 eV Core-core repulsion = 19785.492101 eV Total energy + Delta-G solvation = -3145.472406 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.52687 -39.24001 -37.03883 -33.87576 -33.04229 -32.15299 -30.54006 -27.89208 -27.73119 -26.05308 -25.45601 -24.07777 -23.43529 -21.83995 -20.25543 -18.81271 -18.28412 -16.76159 -16.40842 -15.92537 -15.47084 -15.00987 -14.82166 -14.29385 -14.07574 -13.88769 -13.48405 -13.15243 -12.93300 -12.69679 -12.48848 -11.85614 -11.67702 -11.62905 -11.33125 -11.17251 -11.04475 -10.86676 -10.81646 -10.67917 -10.51218 -10.20473 -9.93471 -9.71940 -9.67146 -9.40226 -9.29622 -9.08200 -8.60444 -8.36934 -6.96242 -6.02896 -3.96284 1.12465 1.33963 3.29967 3.38932 3.42808 3.58338 3.89701 4.43408 4.75385 4.97896 5.02607 5.13386 5.21581 5.31244 5.39004 5.41699 5.49032 5.60780 5.70303 5.91477 5.93354 6.01086 6.10500 6.12053 6.13236 6.24802 6.30093 6.41630 6.49890 6.59650 6.66763 6.74525 6.79999 6.95714 7.12213 7.27551 7.44187 7.48070 7.78324 7.80693 8.04575 8.09648 8.21375 8.55219 9.03161 9.60295 11.07481 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021505 B = 0.005143 C = 0.004621 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.725180 B = 5442.618607 C = 6057.756240 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 C -0.134 4.134 4 C -0.164 4.164 5 C 0.075 3.925 6 N -0.526 5.526 7 C 0.158 3.842 8 C -0.486 4.486 9 H 0.060 0.940 10 C 0.056 3.944 11 N -0.898 5.898 12 Si 0.886 3.114 13 H -0.273 1.273 14 H -0.286 1.286 15 H -0.285 1.285 16 C 0.054 3.946 17 C -0.114 4.114 18 C -0.061 4.061 19 C -0.188 4.188 20 C 0.292 3.708 21 O -0.486 6.486 22 N -0.505 5.505 23 C 0.140 3.860 24 H 0.086 0.914 25 H 0.015 0.985 26 H 0.085 0.915 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.051 0.949 30 H 0.087 0.913 31 H 0.044 0.956 32 H 0.048 0.952 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.042 0.958 36 H 0.024 0.976 37 H 0.259 0.741 38 H 0.074 0.926 39 H 0.077 0.923 40 H 0.134 0.866 41 H 0.134 0.866 42 H 0.394 0.606 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.236 4.302 -2.290 15.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.096 4.096 3 C -0.192 4.192 4 C -0.220 4.220 5 C -0.054 4.054 6 N -0.248 5.248 7 C 0.034 3.966 8 C -0.525 4.525 9 H 0.079 0.921 10 C -0.144 4.144 11 N -0.538 5.538 12 Si 0.715 3.285 13 H -0.198 1.198 14 H -0.212 1.212 15 H -0.212 1.212 16 C -0.074 4.074 17 C -0.117 4.117 18 C -0.087 4.087 19 C -0.209 4.209 20 C 0.113 3.887 21 O -0.292 6.292 22 N -0.223 5.223 23 C -0.017 4.017 24 H 0.105 0.895 25 H 0.034 0.966 26 H 0.103 0.897 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.105 0.895 31 H 0.063 0.937 32 H 0.066 0.934 33 H 0.090 0.910 34 H 0.067 0.933 35 H 0.059 0.941 36 H 0.042 0.958 37 H 0.069 0.931 38 H 0.092 0.908 39 H 0.095 0.905 40 H 0.152 0.848 41 H 0.152 0.848 42 H 0.251 0.749 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 14.022 3.687 -0.897 14.526 hybrid contribution -0.764 1.010 -0.949 1.582 sum 13.258 4.697 -1.846 14.186 Atomic orbital electron populations 1.22591 0.92154 0.99458 1.05923 1.21138 0.98213 0.94321 0.95946 1.21872 0.99514 0.96702 1.01097 1.22754 0.99114 1.02650 0.97514 1.22202 0.98783 0.87933 0.96453 1.62398 1.02798 1.11230 1.48423 1.20694 0.83625 0.96688 0.95616 1.21019 0.90245 1.38720 1.02536 0.92141 1.24845 0.98496 0.95867 0.95224 1.69928 1.19416 1.43443 1.21012 0.86614 0.82487 0.78014 0.81427 1.19773 1.21208 1.21162 1.21821 0.88125 1.01812 0.95669 1.21074 0.97310 0.94804 0.98514 1.21449 0.92596 0.96870 0.97805 1.21995 0.99837 1.01285 0.97760 1.19149 0.88625 0.90789 0.90158 1.84792 1.17305 1.79003 1.48107 1.67172 1.05958 1.24203 1.25005 1.22476 0.90855 0.98441 0.89914 0.89501 0.96625 0.89675 0.93930 0.93414 0.93007 0.89476 0.93718 0.93380 0.91014 0.93260 0.94149 0.95781 0.93098 0.90824 0.90471 0.84791 0.84786 0.74940 0.82104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.90 7.23 37.16 0.27 -2.63 16 2 C -0.09 -1.59 0.77 -154.51 -0.12 -1.71 16 3 C -0.13 -1.91 8.17 37.16 0.30 -1.61 16 4 C -0.16 -2.59 6.33 37.16 0.24 -2.35 16 5 C 0.07 1.35 4.59 -3.83 -0.02 1.33 16 6 N -0.53 -10.18 4.69 -237.53 -1.11 -11.29 16 7 C 0.16 3.61 3.65 -4.98 -0.02 3.59 16 8 C -0.49 -12.37 5.23 -34.44 -0.18 -12.55 16 9 H 0.06 1.59 7.02 -52.48 -0.37 1.22 16 10 C 0.06 1.48 5.21 -17.82 -0.09 1.39 16 11 N -0.90 -24.76 13.29 55.43 0.74 -24.02 16 12 Si 0.89 20.86 29.54 -169.99 -5.02 15.84 16 13 H -0.27 -6.40 7.11 56.52 0.40 -5.99 16 14 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 15 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 16 C 0.05 0.86 4.54 -4.98 -0.02 0.83 16 17 C -0.11 -1.67 4.80 -104.48 -0.50 -2.18 16 18 C -0.06 -0.78 8.18 -39.31 -0.32 -1.10 16 19 C -0.19 -2.30 10.04 -39.28 -0.39 -2.69 16 20 C 0.29 4.06 7.75 -17.12 -0.13 3.93 16 21 O -0.49 -5.79 13.56 -18.71 -0.25 -6.05 16 22 N -0.51 -7.97 10.39 -13.33 -0.14 -8.11 16 23 C 0.14 2.14 10.87 -17.57 -0.19 1.95 16 24 H 0.09 1.92 5.09 -51.93 -0.26 1.66 16 25 H 0.01 0.28 7.72 -51.93 -0.40 -0.12 16 26 H 0.08 1.95 5.15 -51.93 -0.27 1.68 16 27 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 28 H 0.05 0.65 8.12 -51.93 -0.42 0.23 16 29 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 1.56 3.81 -51.92 -0.20 1.36 16 31 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.66 5.75 -51.93 -0.30 0.36 16 33 H 0.07 1.44 6.88 -51.93 -0.36 1.08 16 34 H 0.05 0.81 5.37 -51.93 -0.28 0.53 16 35 H 0.04 0.94 2.09 -51.93 -0.11 0.83 16 36 H 0.02 0.61 7.93 -51.93 -0.41 0.20 16 37 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 38 H 0.07 1.11 3.14 -51.93 -0.16 0.94 16 39 H 0.08 1.24 7.91 -51.93 -0.41 0.83 16 40 H 0.13 1.51 7.22 -52.49 -0.38 1.13 16 41 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 42 H 0.39 2.55 9.06 45.56 0.41 2.96 16 43 H 0.16 2.34 8.06 -52.49 -0.42 1.92 16 LS Contribution 321.27 15.07 4.84 4.84 Total: -1.00 -29.06 321.27 -7.30 -36.36 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -5.17 Total: 6.23 kcal Atomic # 6 Polarization: -12.62 SS G_CDS: -1.18 Total: -13.80 kcal Atomic # 7 Polarization: -42.91 SS G_CDS: -0.52 Total: -43.43 kcal Atomic # 8 Polarization: -5.79 SS G_CDS: -0.25 Total: -6.05 kcal Atomic # 14 Polarization: 20.86 SS G_CDS: -5.02 Total: 15.84 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -29.06 -7.30 -36.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602464563.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.459 kcal (2) G-P(sol) polarization free energy of solvation -29.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.395 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.362 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.097 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds